taxon lfc: PT_VP_HPT vs. RC_VP_HPT se: PT_VP_HPT vs. RC_VP_HPT W: PT_VP_HPT vs. RC_VP_HPT p: PT_VP_HPT vs. RC_VP_HPT q: PT_VP_HPT vs. RC_VP_HPT diff: PT_VP_HPT vs. RC_VP_HPT Fusobacterium nucleatum_subsp._animalis (SP104) -0.469593978916108 0.430514637799579 -1.0907735479478 0.275372538654753 1 FALSE Pelomonas aquatica (SP125) -2.02204101317445 0.790551938675965 -2.55775859149876 0.0105349198304132 1 FALSE Campylobacter gracilis (SP138) 3.14320724149334 1.00996345548226 3.11219898544988 0.00185699284511898 0.213554177188683 FALSE Selenomonas noxia (SP140) 1.75243358473046 0.824066802381398 2.12656738466621 0.0334560448470144 1 FALSE Staphylococcus saprophyticus (SP147) -0.45530267626142 0.74473730675539 -0.611360102591134 0.540961209602111 1 FALSE Streptococcus sanguinis (SP150) 1.51860550691239 0.793914896529907 1.91280641483112 0.0557728396390836 1 FALSE Abiotrophia defectiva (SP152) 0.569622155237657 0.660172755934232 0.862838022498469 0.388226530616117 1 FALSE Bacteroidetes_[G-3] bacterium_HMT_280 (SP16) -0.339866635645754 0.306824845722088 -1.10768942080262 0.267995969797131 1 FALSE Corynebacterium durum (SP161) -0.935144338881347 0.515878784644449 -1.81272106300293 0.0698748541342979 1 FALSE Tannerella sp._HMT_808 (SP162) 0.199344495899874 0.578023426159834 0.344872693524279 0.730190080032246 1 FALSE Stutzerimonas stutzeri (SP164) -0.689442818994057 0.486714332872385 -1.41652458625012 0.156621970917843 1 FALSE Actinomyces massiliensis (SP165) -0.609721605418234 0.409575625521172 -1.488666725815 0.136575151201882 1 FALSE Corynebacterium matruchotii (SP18) -0.280387090292747 0.401298857261562 -0.698698950219024 0.484740190145577 1 FALSE Peptococcus sp._HMT_167 (SP192) 0.0999917834629424 0.525913221426039 0.190129814937548 0.849207407249834 1 FALSE Oribacterium sp._HMT_078 (SP193) 0.338162182704947 0.797197488955795 0.424188720348187 0.671428186318611 1 FALSE Enterococcus faecalis (SP200) -1.94844416253549 1.23496337557781 -1.57773436934829 0.114626646974848 1 FALSE Veillonella parvula (SP202) -0.111494849293952 0.787744660355813 -0.141536788384692 0.887445899623493 1 FALSE Pseudomonas putida (SP204) -1.62007415792339 0.69006386909262 -2.34771624843025 0.0188889049079429 1 FALSE Alloprevotella tannerae (SP217) -0.0615741509860445 0.440998004906967 -0.139624556802778 0.888956637154625 1 FALSE Capnocytophaga sp._HMT_338 (SP241) -0.276441165533392 0.443450229147571 -0.623387129745733 0.533030153485553 1 FALSE Porphyromonas gingivalis (SP248) -0.261289635889644 0.507424783720528 -0.514932743280339 0.606600019195776 1 FALSE Haemophilus parainfluenzae (SP256) 1.62983438013262 0.746176719142303 2.1842471606539 0.028944091185055 1 FALSE Johnsonella ignava (SP270) -0.0486304166899809 0.573644901758608 -0.0847744249811963 0.932440726238335 1 FALSE Actinomyces sp._HMT_169 (SP293) -0.236560476499024 0.61503989945358 -0.38462622784179 0.700514359299447 1 FALSE Aggregatibacter sp._HMT_458 (SP294) -0.218697036863984 0.67794744809788 -0.322587005051177 0.74700803648743 1 FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP296) -0.280278777244281 0.392360335917943 -0.7143402418304 0.475016814101693 1 FALSE Capnocytophaga granulosa (SP310) -0.441763751718465 0.808384632096514 -0.546477177049702 0.584737971866877 1 FALSE Pseudomonas koreensis (SP316) -1.04515230862982 0.339739835320777 -3.07633135703089 0.00209564812667079 0.23890388644047 FALSE Lachnoanaerobaculum saburreum (SP350) -0.44637353263156 0.36325914929407 -1.2288018994126 0.219146089217723 1 FALSE Veillonella dispar (SP351) 1.61882376140169 0.883550745004049 1.8321797254489 0.0669246484536937 1 FALSE Lautropia mirabilis (SP362) 0.913316201987294 0.850225408709839 1.07420478455612 0.282730908457118 1 FALSE Prevotella intermedia (SP363) -0.0921464279868656 0.709052332419134 -0.129957160809953 0.896600319903291 1 FALSE Gemella morbillorum (SP375) -0.488759997685965 0.811705660141351 -0.602139447445583 0.547081318292911 1 FALSE Enterobacter mori (SP393) -1.04186757202937 0.403409295640149 -2.58265633263626 0.00980429317566071 1 FALSE Agrobacterium larrymoorei (SP399) -1.23024291383211 0.503084148148132 -2.44540186440117 0.0144690819573139 1 FALSE Streptococcus sinensis (SP404) 0.118852548309125 0.472151931320141 0.251725218992142 0.801253462614753 1 FALSE Actinomyces naeslundii (SP430) -0.731344698122169 0.588987562813328 -1.24169803285636 0.214347996036158 1 FALSE Selenomonas sp._HMT_146 (SP437) 0.797540248738378 0.67278159758119 1.18543707438748 0.235844680478023 1 FALSE Bacteroidales_[G-2] bacterium_HMT_274 (SP462) 0.398734208078836 0.601487413454785 0.662913635696236 0.507385868142201 1 FALSE Desulfobulbus sp._HMT_041 (SP463) 0.39760474132513 0.728216410164069 0.545998051919138 0.585067276306439 1 FALSE Streptococcus intermedius (SP47) 0.447846981443508 0.558530586978139 0.801830717752683 0.422650887170054 1 FALSE Leptotrichia hongkongensis (SP492) 0.47508869514098 0.694319338781588 0.68425099029314 0.493816688860127 1 FALSE Fusobacterium sp._HMT_203 (SP499) 0.746327334901666 1.1822797394044 0.631261206656255 0.52786974760845 1 FALSE Granulicatella adiacens (SP508) -0.0577703162568657 0.696838532886178 -0.08290344682518 0.933928313308262 1 FALSE Fusobacterium nucleatum_subsp._vincentii (SP53) 0.000961230247992687 0.53681381317901 0.00179062129996299 0.998571291673999 1 FALSE Cutibacterium acnes (SP537) -1.95818016234201 0.603189729288368 -3.24637517394773 0.00116884693235939 0.136755091086048 FALSE Porphyromonas endodontalis (SP580) 0.116614503234566 0.669486192528066 0.174185075862751 0.861720013981049 1 FALSE Cardiobacterium valvarum (SP581) 0.130781511667871 0.708180408490471 0.184672592039985 0.853485844772124 1 FALSE Actinomyces oris (SP624) -0.920365496836378 0.241622037687057 -3.80911238745703 0.000139466558012987 0.0165965204035455 TRUE Leptotrichia buccalis (SP639) 0.712418499280839 0.795206474374349 0.895891221008172 0.370310863343346 1 FALSE Rothia aeria (SP66) 0.706954742300073 0.785900493440465 0.899547395886229 0.368361162306314 1 FALSE Staphylococcus warneri (SP673) -2.17389863124046 0.857494990121744 -2.53517356519111 0.0112391624132466 1 FALSE Peptostreptococcus stomatis (SP684) -1.14264609721111 0.742226012710975 -1.5394853826769 0.123685843721425 1 FALSE Streptococcus lactarius (SP69) 0.543192443261313 0.726295122648015 0.747894934611258 0.454523533137341 1 FALSE Fusobacterium nucleatum (SP70) 0.0496753811943904 0.522701509979144 0.0950358478902661 0.924286353269886 1 FALSE Rhizobium rosettiformans (SP706) -1.25888380329864 0.414561421642897 -3.03666414088825 0.00239211828378688 0.267917247784131 FALSE Filifactor alocis (SP718) 0.76146714680215 0.656545368631658 1.15980887716741 0.246126629009387 1 FALSE Streptococcus parasanguinis_clade_411 (SP731) -0.130362562317668 0.762004461612834 -0.171078476419609 0.864162059690301 1 FALSE Staphylococcus hominis (SP733) -0.55633641576808 0.435057509948708 -1.27876522769063 0.200979742232735 1 FALSE Johnsonella sp._HMT_166 (SP74) -0.545451212579954 0.847677538489008 -0.643465454507885 0.519922123493361 1 FALSE Veillonella atypica (SP762) -0.853871604715402 0.538821641141152 -1.5847017631048 0.113034111113318 1 FALSE Neisseria flavescens (SP786) -0.284514046789362 0.757519148127289 -0.375586607272869 0.707224248855396 1 FALSE Parvimonas micra (SP8) 1.9350477738006 0.835701767238218 2.31547646500191 0.0205868710960283 1 FALSE Pantoea dispersa (SP807) -0.592855171120641 0.540769305973018 -1.0963180871627 0.272939596741918 1 FALSE Alishewanella alkalitolerans (SP844) -0.901186692006259 0.226941125395647 -3.97101534785791 7.1566968094049e-05 0.00858803617128589 TRUE Moraxella osloensis (SP847) -0.0886051581932556 0.53498495069474 -0.165621776983056 0.868454608426221 1 FALSE Massilia atriviolacea (SP864) -1.14189799093103 0.813999095468902 -1.40282464352524 0.160669136417968 1 FALSE Streptococcus gordonii (SP9) -0.824305739475584 0.835217829221562 -0.986935037346906 0.323674486411978 1 FALSE Stenotrophomonas pavanii_nov_97.902% (SPN100) -1.1685225223904 0.607633757313425 -1.92307044881258 0.0544712029962611 1 FALSE Streptococcus gordonii_nov_95.814% (SPN102) -0.288565291689452 0.327826817498845 -0.88023699186986 0.378730937822928 1 FALSE Veillonella atypica_nov_90.000% (SPN203) -0.690366327114272 0.374677533985263 -1.84256130804316 0.0653930875086606 1 FALSE Comamonas faecalis_nov_97.674% (SPN205) -0.0577771581242131 0.503003424269051 -0.114864343534387 0.908552647718325 1 FALSE Actinomyces oris_nov_86.480% (SPN214) -0.662285429442519 0.319519332322637 -2.07275542493238 0.0381950467436265 1 FALSE Pradoshia eiseniae_nov_93.764% (SPN216) -1.0802251816896 0.31969080444454 -3.37896857423373 0.000727583246348453 0.0858548230691174 FALSE Streptococcus pseudoporcinus_nov_93.488% (SPN224) -0.437226791197328 0.27467274308427 -1.59180989816374 0.111427425435493 1 FALSE Enterococcus faecalis_nov_97.669% (SPN300) -1.39839910249563 0.444683926046365 -3.14470350868905 0.00166255231380229 0.192856068401066 FALSE Fusobacterium nucleatum_nucleatum_subsp._animalis_simiae (SPP1) -0.166786508914711 0.544351713475725 -0.306394753218957 0.759304102719212 1 FALSE Streptococcus cristatus_cristatus_clade_578_downii_gwangjuense_i ...(20 species) (SPP10) -0.0764198696959988 0.464760427192401 -0.164428521071917 0.869393812559041 1 FALSE Streptococcus parasanguinis_parasanguinis_clade_721_sp._HMT_066 (SPP100) -0.404553491647403 0.499752052028007 -0.809508415234543 0.418222764332826 1 FALSE Fusobacterium nucleatum_nucleatum_subsp._nucleatum_simiae (SPP102) -0.605403256382051 0.474960353481348 -1.27463956084879 0.202436848204938 1 FALSE Fusobacterium canifelinum_nucleatum_nucleatum_subsp._polymorphum (SPP104) 0.718795782071226 0.907331603483485 0.792208470763698 0.428239130220409 1 FALSE Sphingomonas endophytica_phyllosphaerae (SPP105) -2.11854664596591 0.695085348756368 -3.04789426184334 0.0023045100070749 0.260409630799464 FALSE Pseudomonas brenneri_proteolytica (SPP108) -0.704610647604917 0.407897092943441 -1.72742257739654 0.0840917987512069 1 FALSE Selenomonas infelix_sp._HMT_479_sp._HMT_481 (SPP114) 0.453080931430442 0.636835935430359 0.711456289168513 0.476801528343326 1 FALSE Streptococcus cristatus_downii_gwangjuense_infantis_infantis_cla ...(17 species) (SPP12) -0.920368311021935 1.6081816539032 -0.572303700137432 0.567116243424859 1 FALSE Acinetobacter_Prolinoborus fasciculus_lwoffii (SPP122) -1.13141856161891 1.1563479116086 -0.978441306686835 0.327856106885143 1 FALSE Ralstonia insidiosa_sp._HMT_406 (SPP123) -1.58587672019708 0.624404269180585 -2.53982363425902 0.0110908380784181 1 FALSE Streptococcus salivarius_vestibularis (SPP129) -1.6885072283801 0.738284859017209 -2.28706739378051 0.0221918897117044 1 FALSE Sphingomonas dokdonensis_jeddahensis (SPP130) -1.13233314690222 0.580098301845093 -1.95196769806196 0.050942039788757 1 FALSE Streptococcus lactarius_peroris (SPP131) -0.427194727801441 0.412962593532913 -1.0344634949785 0.300919534161415 1 FALSE Micrococcus antarcticus_endophyticus_luteus_yunnanensis (SPP133) -0.569865805367859 0.326182936991188 -1.74707423577848 0.0806244618471162 1 FALSE Methylobacterium brachiatum_fujisawaense_longum_mesophilicum_oryzae ...(8 species) (SPP149) -0.616713580806266 0.484105251128001 -1.27392458431153 0.202690144767813 1 FALSE Brevundimonas bullata_halotolerans (SPP156) -0.640194953712223 0.52282300752288 -1.22449652081198 0.220764977993833 1 FALSE Streptococcus pneumoniae_pseudopneumoniae (SPP163) -0.671187522284154 0.331692600148983 -2.02352274962626 0.0430192805198252 1 FALSE Staphylococcus edaphicus_saprophyticus (SPP18) -0.972549452786354 0.38548637683907 -2.52291523441402 0.0116386452060316 1 FALSE Fusobacterium nucleatum_nucleatum_subsp._animalis (SPP2) 0.303573458003067 0.652754462926832 0.465065312065273 0.641884685856398 1 FALSE Psychrobacter alimentarius_aquaticus_vallis (SPP22) -1.12301557244622 0.970932760505922 -1.15663578172093 0.247421196818594 1 FALSE Neisseria flava_macacae_mucosa_sicca (SPP23) -0.10791666084799 0.604669563314767 -0.178472123280684 0.858352212114964 1 FALSE Parvimonas_Peptostreptococcus Candidatus massiliensis_sp._HMT_110_sp._HMT_393 (SPP36) -0.297467384531087 0.413719856162246 -0.719006787081621 0.472136737862077 1 FALSE Paracoccus aminovorans_caeni_chinensis_huijuniae_subflavus (SPP37) -0.781736060724389 0.310675056894383 -2.51624983524231 0.0118611070489594 1 FALSE Kitasatospora_Streptomyces aburaviensis_anulatus_aureofaciens_azatica_cinereo ...(21 species) (SPP38) -1.08037106066831 0.606035754266876 -1.7826853499349 0.0746375374481209 1 FALSE Staphylococcus capitis_caprae (SPP39) -1.11192697680854 0.489757770433635 -2.27036107221745 0.0231856843536833 1 FALSE Staphylococcus capitis_caprae_epidermidis (SPP40) -0.924619285090263 1.03090734708805 -0.896898530893185 0.369773064104508 1 FALSE Peptoanaerobacter_Peptostreptococcaceae_[XI][G-7] [Eubacterium] yurii_[Eubacterium]_yurii_subsps._yurii_&_margaretiae (SPP44) 0.0943239725024601 0.629993589959581 0.149722114646455 0.880983859882698 1 FALSE Janthinobacterium aquaticum_lividum_rivuli (SPP53) -1.45321176664765 1.29524913051142 -1.12195540797149 0.261881400192681 1 FALSE Veillonellaceae_[G-1] bacterium_HMT_132_bacterium_HMT_150 (SPP59) -0.517681849417884 0.244988047645492 -2.11309022784243 0.0345930459314431 1 FALSE Aggregatibacter segnis_sp._HMT_512 (SPP61) -0.0605082368063265 0.545823588026477 -0.110856764225058 0.911729931356443 1 FALSE Pseudomonas azotoformans_lactis_paralactis (SPP62) -1.40998987615038 1.2292597308003 -1.14702356289864 0.25137188264685 1 FALSE Streptococcus lactarius_sinensis (SPP67) -0.754705053517178 0.304395349610808 -2.47935802725674 0.0131619116361116 1 FALSE Streptococcus cristatus_cristatus_clade_578 (SPP7) 0.99809601594311 0.819642889659402 1.21772058116415 0.223330173228926 1 FALSE Fusobacterium naviforme_nucleatum_sp._HMT_204 (SPP72) -0.20763544607703 0.655657498477367 -0.316682790266598 0.751484308569583 1 FALSE Pinus_Triticum aestivum_sylvestris (SPP75) -1.06560099312465 0.380227771103524 -2.80253330794852 0.00507029805104694 0.562803083666211 FALSE Streptococcus cristatus_cristatus_clade_578_downii_gwangjuense_i ...(18 species) (SPP8) -0.566540920899831 0.804789851649611 -0.703961313302558 0.481456866337322 1 FALSE Sphingomonas aerolata_aurantiaca_faeni_ginsenosidivorax_olei_pa ...(6 species) (SPP81) -1.15448890638053 1.02538501975621 -1.12590771674723 0.260204582697787 1 FALSE Enterobacter asburiae_cancerogenus_cloacae_hormaechei (SPP88) -0.665336657339557 0.538975712560841 -1.23444645432785 0.217036587797809 1 FALSE Brevundimonas albigilva_nasdae_vesicularis (SPP93) -1.52701757559699 0.64588143593841 -2.36423821870397 0.0180671909526974 1 FALSE Kluyvera_Siccibacter ascorbata_cryocrescens_turicensis (SPP96) -1.50918522079931 0.689544563461258 -2.18866959551354 0.0286208633955646 1 FALSE Streptococcus multispecies_sppn14_4_nov_90.531% (SPPN14) -0.522622380894799 0.353789258345339 -1.47721381745474 0.139618331073948 1 FALSE Enterococcus multispecies_sppn23_2_nov_96.512% (SPPN23) -0.601199380650909 0.334849891592285 -1.79542952154493 0.0725852924308737 1 FALSE Streptococcus multispecies_sppn34_17_nov_95.592% (SPPN34) -0.590922668662425 0.348343532376286 -1.69637904464981 0.089814119632069 1 FALSE