Taxon S016 S017 S018 S019 S020 S021 S022 S023 S024 S025 S026 S027 S028 S029 S030 S106 S107 S108 S109 S110 S111 S112 S113 S114 S115 S116 S117 S118 S119 S120 Actinomyces israelii (SP10) 0 0 0 0 0 0 0 0 5 0 462 1025 7 5 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 Neisseria subflava (SP101) 7731 1 0 0 0 0 1 13 0 9 0 0 0 0 0 0 0 0 0 16 93 0 0 0 0 0 0 0 0 56 Campylobacter concisus (SP103) 22 3 2 2 3 72 0 16 344 22 3 1 16 101 52 46 0 0 0 0 0 0 162 777 22 0 0 0 0 0 Fusobacterium nucleatum_subsp._animalis (SP104) 3 5 198 43 663 0 0 150 41 4 20 1 17 28 19 9 1 72 0 0 0 0 0 0 2 0 0 0 0 0 Neisseria oralis (SP11) 207 0 0 0 0 5685 0 4 5 0 1 9 0 0 0 0 19 0 0 0 0 0 0 0 0 0 0 0 0 1 Prevotella loescheii (SP114) 0 198 0 0 0 1 0 0 0 0 0 0 0 0 0 15 0 369 0 0 0 0 98 1 0 0 0 0 0 0 Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP119) 0 0 0 0 0 0 0 0 9 0 0 0 258 0 140 15 0 35 0 0 0 0 0 0 406 75 0 0 0 0 Mycoplasma faucium (SP124) 0 0 3022 0 0 0 0 1605 0 0 0 0 0 0 1 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Pelomonas aquatica (SP125) 0 0 0 0 0 0 42 0 0 0 0 0 0 0 0 0 0 0 0 54 0 0 0 1 8 1 0 0 0 0 Campylobacter gracilis (SP138) 159 832 1764 5308 2189 0 10713 106 20585 2 2 0 1368 348 2353 70 0 2620 26 459 0 0 14457 13676 111 0 1 902 1425 2 Selenomonas noxia (SP140) 8 2 0 0 0 0 0 0 176 0 460 0 0 78 560 235 233 312 0 0 0 0 338 1969 13 291 0 0 0 1 Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP144) 89 667 1849 4239 1401 0 4787 1112 1026 0 820 3 1131 4 110 37 0 8 0 0 0 0 1 26 64 0 1 3 0 0 Staphylococcus saprophyticus (SP147) 0 1 4 0 0 0 0 0 5 0 0 0 0 0 0 0 378 26 0 0 0 0 0 11 0 54 0 0 0 7 Streptococcus sanguinis (SP150) 6 11 116 8547 1312 30978 5 664 34 28422 6927 1058 4 3305 12 20 0 44 1705 306 280 0 5 23 3 0 0 0 0 1279 Abiotrophia defectiva (SP152) 0 2 0 0 0 0 0 19 0 4788 0 14 0 0 1 0 0 0 18 1 90 0 157 0 3 0 0 0 0 1111 Porphyromonas pasteri (SP153) 334 0 1 0 0 18 1 13 0 0 0 0 0 1 0 10 0 0 0 0 57 0 0 0 0 0 0 0 0 0 Fusobacterium periodonticum (SP154) 10 2 78 354 185 20 4 18 5 2 0 0 0 6 5 240 0 110 0 0 0 0 0 0 0 0 0 0 0 0 Aggregatibacter aphrophilus (SP155) 732 0 54 1 0 140 0 1 438 12 0 0 455 0 0 11 0 9 0 126 106 0 0 0 0 0 0 0 0 0 Neisseria elongata (SP158) 458 0 0 0 0 564 0 0 47 0 0 0 1 0 0 177 0 0 0 92 0 0 7 0 0 61 0 0 0 478 Treponema socranskii (SP159) 0 50 3283 0 2425 129 0 2696 242 0 0 0 2936 2 192 22 0 29 0 0 0 0 68 27 6 0 0 0 0 0 Bacteroidetes_[G-3] bacterium_HMT_280 (SP16) 0 0 2497 0 0 0 0 331 0 0 0 0 3 0 0 4 0 14 0 0 0 0 0 0 9 0 0 0 0 0 Corynebacterium durum (SP161) 5 0 0 8 0 2 1 1 0 5 0 0 0 0 0 0 0 0 137 0 0 0 0 0 0 0 0 0 0 0 Tannerella sp._HMT_808 (SP162) 6 0 0 0 457 0 0 0 2 0 0 0 0 0 2 318 0 40 0 0 0 0 0 129 0 0 0 0 0 0 Kingella denitrificans (SP163) 308 0 0 0 5 29 0 0 6 1 0 0 0 1 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Stutzerimonas stutzeri (SP164) 0 209 0 0 0 0 0 0 0 0 479 0 0 1 0 0 0 0 17 1 1 62 0 0 0 0 0 0 0 0 Actinomyces massiliensis (SP165) 3 0 2 413 10 7 0 0 0 0 0 142 3 2 4 0 0 5 44 0 0 1 0 0 0 0 0 0 0 0 Corynebacterium matruchotii (SP18) 64 0 5 0 0 1 0 0 3 88 0 4 0 0 27 15 0 82 0 0 0 0 0 0 0 0 0 0 0 0 Veillonellaceae_[G-1] bacterium_HMT_155 (SP181) 0 0 8 0 0 0 0 0 9 0 0 0 0 0 29 23 0 1 0 0 0 0 1299 623 0 0 0 0 0 0 Stomatobaculum sp._HMT_373 (SP188) 0 0 0 0 1 0 0 110 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 Peptococcus sp._HMT_167 (SP192) 0 0 584 0 191 0 0 2 3 0 0 0 28 0 2 38 0 207 0 47 0 0 0 0 0 0 0 0 0 1 Oribacterium sp._HMT_078 (SP193) 2 2 11 0 2 1 0 9 0 2 2 0 0 32 242 0 0 0 0 0 0 0 4912 2680 0 0 0 0 0 0 Micrococcus aloeverae (SP195) 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 Lachnospiraceae_[G-8] bacterium_HMT_500 (SP20) 5 0 1784 301 0 2 0 2682 5 0 677 39 1266 3 132 84 0 0 0 0 0 0 0 0 75 0 0 0 0 0 Enterococcus faecalis (SP200) 2 175 33 4 184 277 0 2 4 2 202 53 1 6 1 2 6 13 161 447 781 372 0 0 3 3654 0 0 0 533 Veillonella parvula (SP202) 24 2 13 6 3 96 3 1 344 21 9 12 19 780 408 6 0 0 0 0 0 0 0 0 39 665 0 0 0 685 Pseudomonas putida (SP204) 0 0 0 659 0 0 0 0 0 0 0 0 0 0 0 0 0 1 38 1 49 0 0 0 0 0 0 0 0 0 Olsenella sp._HMT_807 (SP205) 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 0 5 0 2 0 0 0 0 0 0 0 0 0 0 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP212) 0 0 0 0 0 19 0 0 0 0 0 0 0 0 1 49 0 94 0 0 0 0 313 146 0 0 0 0 0 0 Peptostreptococcaceae_[XI][G-6] [Eubacterium]_nodatum (SP213) 0 30 107 0 0 0 0 11 0 0 0 13 2 0 5 5 0 2 0 0 0 0 0 0 0 0 0 0 0 0 Veillonellaceae_[G-1] bacterium_HMT_135 (SP214) 0 0 39 0 0 0 0 1 0 0 0 0 6 0 1 1 1003 0 0 0 0 0 0 0 0 0 0 0 0 0 Alloprevotella tannerae (SP217) 0 0 0 0 14 0 0 2 2 1 1 0 0 0 9 42 52 0 0 0 0 0 0 15 0 0 0 0 0 0 Shuttleworthia satelles (SP232) 0 0 5 0 0 0 0 7 0 0 0 1 0 0 25 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 Peptostreptococcaceae_[XI][G-6] [Eubacterium]_minutum (SP233) 0 0 0 0 0 0 0 1 0 0 0 0 10 0 0 0 0 14 0 0 0 0 0 0 173 0 0 0 0 0 Capnocytophaga sp._HMT_338 (SP241) 0 0 5 0 0 0 826 1 410 0 0 0 0 0 0 5 0 261 0 0 0 0 0 0 0 0 0 0 0 0 Porphyromonas gingivalis (SP248) 0 2 1 2 0 0 1 17738 1 0 1350 143 7783 1 3 819 0 2 0 0 0 0 0 0 0 0 0 0 0 0 Streptococcus mutans (SP249) 0 1 0 0 2 0 0 1 25 0 610 156 0 117 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 149 Bacteroidetes_[G-5] bacterium_HMT_511 (SP251) 0 0 7 19 1061 1 0 0 7 0 0 0 0 0 0 36 0 91 0 0 0 0 0 0 1 0 0 0 0 0 Haemophilus parainfluenzae (SP256) 17 1 22 6 64 1129 855 69 1313 4085 1639 1431 127 14295 9 4 532 6 247 86 89 60 0 0 0 64 0 0 0 959 Treponema sp._HMT_951 (SP267) 0 0 466 0 290 0 0 362 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 Johnsonella ignava (SP270) 0 57 0 0 0 0 0 0 0 0 0 0 8 0 0 30 0 1326 0 0 0 0 0 0 0 0 0 0 0 0 Fretibacterium sp._HMT_360 (SP292) 1 0 7 7 34 0 0 41 3 0 26 0 102 0 5 6 0 24 0 0 0 0 0 0 211 0 0 0 0 0 Actinomyces sp._HMT_169 (SP293) 1 2 6 728 1 4 0 0 0 140 0 22 4 0 1 0 0 1 102 0 12 3 0 0 0 0 0 0 0 117 Aggregatibacter sp._HMT_458 (SP294) 1 0 1 0 0 19 17 0 59 16 0 0 13 45 0 1987 0 57 0 2 0 0 0 0 0 0 0 0 0 0 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP296) 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 44 1 28 0 0 0 0 0 0 0 0 0 0 0 0 Peptostreptococcaceae_[XI][G-7] bacterium_HMT_081 (SP309) 0 0 1166 0 0 0 0 15 0 0 0 0 0 0 5 93 0 0 0 0 0 0 0 0 2 0 0 0 0 0 Capnocytophaga granulosa (SP310) 524 1 0 0 1 0 0 0 5 0 0 18 0 0 7 199 0 8 0 0 0 0 0 70 0 0 0 0 0 162 Oribacterium asaccharolyticum (SP315) 0 0 0 1 2 1 0 2 0 4 0 73 1 15 956 0 0 0 0 0 0 0 3 58 26 0 0 0 0 0 Pseudomonas koreensis (SP316) 0 18013 0 91 0 1 1 1 0 0 1 1 0 0 0 0 0 0 8 0 2 1 0 0 0 0 0 0 0 0 Treponema sp._HMT_257 (SP321) 0 0 0 0 0 0 0 633 5 0 0 0 0 0 28 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Treponema sp._HMT_270 (SP322) 0 0 0 0 0 0 0 0 0 0 835 20 0 20 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 Lachnoanaerobaculum saburreum (SP350) 6 0 79 0 0 0 0 0 88 6 0 0 0 0 881 0 0 0 0 0 0 0 3 17 16 0 0 0 0 1 Veillonella dispar (SP351) 37 17 6 6 43 137 3 105 2079 10611 118 609 493 17984 5800 30 0 14 22 21 0 0 468 103 84 918 0 0 0 4569 Lautropia mirabilis (SP362) 2 0 0 0 7 71 38 2 0 2164 409 35 0 124 0 13 0 0 2727 149 613 109 11 0 6 0 0 0 0 0 Prevotella intermedia (SP363) 2 0 176 1 0 0 0 1 0 0 0 0 20 0 0 923 0 79 0 0 48 0 0 0 0 0 0 0 0 0 Schaalia odontolytica (SP365) 0 1 2 0 4 73 0 1 7 19 28 37 1 37 1 0 0 1 7 0 14 0 0 0 0 0 0 0 0 0 Gemella morbillorum (SP375) 519 0 2 261 0 0 626 9 26 5 0 0 21 17 10 273 0 58 0 128 37 77 0 0 3 1 0 0 0 1 Peptostreptococcaceae_[XI][G-4] bacterium_HMT_369 (SP382) 0 1 1499 0 92 0 0 170 14 3 0 23 200 0 26 3 0 3 0 0 0 0 0 1 301 0 0 0 0 0 Prevotella oris (SP383) 4 454 1 62 0 1 6 77 26 0 0 0 2 0 28 1 60 11 0 112 0 0 101 310 0 0 0 0 0 0 Enterobacter mori (SP393) 0 0 0 0 0 28 0 0 0 0 1 0 0 1 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 1 Streptococcus sinensis (SP404) 2 0 1 11 1 556 14 5 50 109 157 189 1 337 4 9 0 2 1 23 5 0 0 3 4 0 0 0 0 158 Veillonella denticariosi (SP414) 0 1 0 1 1 2 1 4 6 4 123 89 74 1689 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 Lachnoanaerobaculum orale (SP418) 1 0 0 1 0 0 0 1 72 2 1 2 3 21 43 0 0 0 0 0 0 0 0 16 0 0 0 0 0 0 Selenomonas flueggei (SP421) 0 0 0 0 0 0 0 0 310 0 0 0 3 0 55 32 0 4 0 0 0 0 165 325 0 0 0 0 0 0 Actinomyces naeslundii (SP430) 1 0 2 0 0 12 7 0 0 522 11 278 4 159 45 0 0 1 1 0 1 0 0 0 0 795 0 0 0 1 Leptotrichia sp._HMT_212 (SP433) 87 0 0 0 1 12 0 0 0 0 0 0 0 0 0 200 0 333 1 0 0 0 0 0 0 0 0 0 0 75 Selenomonas sp._HMT_146 (SP437) 0 1 0 0 0 0 0 1 18 0 0 0 0 5 25 201 0 39 0 0 0 0 585 166 17 0 0 0 0 0 Streptococcus anginosus (SP439) 0 2 20 0 0 0 0 36 24 0 0 1 0 318 160 12 0 0 0 0 0 0 0 0 2 0 0 0 0 0 Selenomonas sp._HMT_134 (SP44) 1 0 80 0 0 0 0 105 9 0 0 0 0 0 14 57 166 0 0 0 0 0 4 9 3 0 0 0 0 0 Aggregatibacter sp._HMT_513 (SP441) 2576 0 0 0 0 0 0 17 7 0 0 0 0 58 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Haemophilus haemolyticus (SP444) 24 0 1 0 0 1 0 97 0 24 1585 26983 46 1325 1 0 0 7 0 0 0 0 0 0 0 0 0 0 0 71 Fretibacterium sp._HMT_359 (SP456) 0 0 33 0 9 0 0 59 0 0 1 0 3 0 4 11 0 0 0 0 0 0 0 0 45 0 0 0 0 0 Treponema lecithinolyticum (SP459) 0 9 44 0 0 0 0 0 26 0 0 0 304 0 4 6 0 222 0 0 0 0 0 0 0 0 0 0 0 0 Treponema denticola (SP46) 0 0 424 10 200 0 0 2034 5 1 26 20 116 1 3 57 0 41 0 0 0 0 0 0 5 0 0 0 0 0 Leptotrichia shahii (SP461) 4 0 0 0 0 0 0 0 79 3 5 0 1 0 72 2 1 0 0 0 0 0 0 0 0 0 0 0 0 323 Bacteroidales_[G-2] bacterium_HMT_274 (SP462) 0 112 15 1184 6235 0 1 7 1 0 5 0 18 2 0 75 0 319 0 70 0 0 0 0 39 0 0 0 0 0 Desulfobulbus sp._HMT_041 (SP463) 0 0 0 54 4850 0 0 510 49 0 0 0 3957 1 0 35 0 55 0 0 0 0 0 3 11120 1 0 0 0 0 Streptococcus intermedius (SP47) 660 8442 344 6594 0 173 13231 8 10 15 4 56 165 3690 41 0 0 7 71 246 0 9 0 62 0 0 0 0 0 0 Dialister invisus (SP48) 7 1 62 130 41 0 0 93 157 0 4 0 0 1 1415 30 11 217 0 8 0 0 0 0 0 0 0 0 0 0 Granulicatella elegans (SP486) 10 0 0 0 0 515 0 30 0 58 0 1 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2273 Ruminococcaceae_[G-1] bacterium_HMT_075 (SP491) 385 0 0 0 0 0 0 4 0 0 0 0 0 0 72 81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Leptotrichia hongkongensis (SP492) 18 0 2 0 0 0 0 1 2 245 0 0 2 0 6 367 0 6 0 0 0 0 555 30 70 0 0 0 0 1 Fusobacterium sp._HMT_203 (SP499) 31 43 5345 11197 4305 1 8 814 287 2 40 14 39 5 144 535 0 4229 902 2165 169 358 0 0 910 0 0 0 0 18 Capnocytophaga sputigena (SP50) 5 0 1 0 0 4 0 22 0 1 0 1 0 0 0 18 0 0 0 0 0 0 0 0 1 0 0 0 0 0 Granulicatella adiacens (SP508) 1166 4 5 439 0 172 4 37 32 773 66 1214 5 179 51 5 2 0 1 78 0 0 0 33 0 0 0 0 0 477 Fretibacterium fastidiosum (SP510) 0 0 160 0 95 0 0 101 27 0 0 9 138 1 13 10 0 2 0 0 0 0 0 1 321 0 0 0 0 0 Finegoldia magna (SP517) 0 0 0 1 0 0 0 0 0 0 0 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_952 (SP52) 0 0 0 2 0 0 0 2 3 0 0 0 0 1 2 5 48 44 0 0 0 0 0 0 0 0 0 0 0 0 Pseudoramibacter alactolyticus (SP523) 0 1 0 2 0 0 0 6 1 1 1 0 108 0 16 0 0 0 0 0 35 0 0 0 0 0 2 0 0 0 Leptotrichia sp._HMT_417 (SP525) 0 6 4 5 3 0 1 1 18 10 5 0 15 1 189 87 0 1 0 0 0 0 8 248 16 0 0 0 0 70 Fusobacterium nucleatum_subsp._vincentii (SP53) 10 3314 1308 79 682 1 2 2499 122 2 2914 49 8613 19 25 775 0 18 0 2 0 0 0 0 6 0 0 0 0 2 Cutibacterium acnes (SP537) 0 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 3 9 6 0 0 0 0 0 0 0 0 3 Lachnospiraceae_[G-3] bacterium_HMT_100 (SP543) 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52 0 113 0 0 36 0 469 453 2 0 0 0 0 0 Actinomyces sp._HMT_175 (SP549) 0 0 0 0 0 0 0 1 0 3 672 1330 0 14 0 0 0 0 12 0 0 3 0 0 0 0 0 0 0 0 Tannerella forsythia (SP569) 0 1 191 1 293 0 0 424 7 0 7 0 243 0 0 93 0 10 0 0 0 0 0 0 42 0 0 0 0 0 Porphyromonas endodontalis (SP580) 0 0 31 0 1 1 0 8 4 0 0 3 2 0 6 50 202 31 0 0 0 0 0 0 150 0 0 0 0 0 Cardiobacterium valvarum (SP581) 115 23 0 0 108 17 0 2 5 0 0 0 0 0 0 152 0 813 0 1 0 0 14 39 0 0 0 0 0 0 Catonella sp._HMT_451 (SP582) 5 0 204 0 292 1 0 284 0 0 0 0 62 0 4 6 0 0 0 0 0 0 0 0 59 0 0 0 0 0 Treponema sp._HMT_237 (SP595) 0 0 118 2 22 4 0 97 1 1 0 0 8 1 2 128 0 64 0 0 0 0 20 36 0 0 0 0 0 0 Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP620) 0 0 19 0 2 0 0 5 0 0 0 0 2 1 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Gemella haemolysans (SP621) 15 11 3 0 1 789 0 11 7 50 0 107 0 16 17 1 0 0 0 0 0 0 115 0 0 0 0 0 0 1213 Actinomyces oris (SP624) 1 0 9 1 0 60 1 3 0 68 878 4365 1 1088 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP634) 0 0 1 0 0 0 0 1 0 0 1 0 1 0 3 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 Treponema sp._HMT_256 (SP638) 0 0 39 0 1032 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Leptotrichia buccalis (SP639) 50 2 1 0 0 0 1 0 0 14 0 3 2 0 1 846 0 179 1 0 0 0 341 0 6 0 0 0 0 466 Rothia dentocariosa (SP648) 0 5 3 470 1 0 1 2 1 3 3 2 5 6 2 0 0 0 68 0 0 0 0 0 0 0 0 0 0 0 Rothia aeria (SP66) 1 3 4 0 0 1 0 1 4 0 0 23 0 0 0 2 757 1 705 68 196 126 1 0 0 0 0 0 0 4 Staphylococcus warneri (SP673) 0 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29 0 0 0 0 0 1 0 3 0 0 0 0 7 Solobacterium moorei (SP677) 0 0 0 1 0 0 0 7 1 0 0 0 0 5 8 1 0 0 0 0 0 0 0 0 17 0 0 0 0 0 Schaalia meyeri (SP681) 3 2 5 0 0 0 40 0 11 3 0 1 2 0 0 0 0 11 14 31 0 0 0 0 0 1 0 0 0 0 Dialister pneumosintes (SP683) 3 0 44 0 0 0 1 118 3 0 1 0 0 1 39 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Peptostreptococcus stomatis (SP684) 14 0 77 0 0 63 0 24 0 0 0 0 0 0 0 28 0 19 22 0 0 43 0 0 0 0 0 0 0 198 Actinomyces gerencseriae (SP686) 0 0 2 3 0 0 19 0 2 0 660 1008 53 18 0 0 0 3 0 0 0 0 10 57 0 0 0 0 0 0 Capnocytophaga sp._HMT_323 (SP687) 5 0 5 0 0 0 0 0 0 1 0 0 0 0 2 14 0 125 0 0 0 0 0 0 0 0 0 0 0 0 Streptococcus lactarius (SP69) 327 9 144 455 17 1215 831 333 360 874 3522 3633 16 8473 47 71 5 10 379 261 133 12 0 0 0 0 0 0 0 130 Schaalia cardiffensis (SP698) 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 21 0 0 0 0 0 0 0 0 0 Fusobacterium nucleatum (SP70) 73 1471 244 107 788 2 615 52 247 0 46 1 809 0 4 142 1 72 0 34 0 0 0 0 0 0 0 0 0 1 Rhizobium rosettiformans (SP706) 0 0 0 0 0 0 0 0 0 0 31 98 4 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 Filifactor alocis (SP718) 19 341 4778 0 3259 0 1 5279 5 2 780 27 5962 48 32 111 0 41 30 66 0 0 0 1 836 0 0 0 0 0 Aggregatibacter paraphrophilus (SP719) 5 0 3 0 0 0 359 0 2 1 0 0 1 0 0 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Streptococcus parasanguinis_clade_411 (SP731) 0 6 0 2 5 7 0 1 562 43 31 3 2 49 13 0 0 0 0 0 43 0 0 0 23 0 0 0 0 3494 Staphylococcus hominis (SP733) 0 108 0 0 0 56 0 0 0 0 531 61 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 196 Johnsonella sp._HMT_166 (SP74) 0 0 39 0 0 0 0 0 0 0 0 0 0 0 23 106 0 0 0 0 0 0 0 0 1252 0 0 0 0 0 Peptostreptococcaceae_[XI][G-2] bacterium_HMT_091 (SP759) 2 0 0 0 0 0 0 0 0 0 0 0 0 0 9 2 0 0 0 0 0 0 0 0 27 0 0 0 0 0 Veillonella atypica (SP762) 1 4 7 6 9 7 2 7 3121 21 5 7 5 84 340 0 0 0 0 0 0 0 0 0 0 0 0 0 0 223 Neisseria flavescens (SP786) 8 0 3 5 0 0 1 0 0 3 0 0 0 0 4 60 55 0 0 0 0 0 0 0 0 0 0 0 0 446 Parvimonas micra (SP8) 46 6684 377 14 247 3 1167 248 4513 0 376 2 2896 17 288 62 265 62 310 591 0 0 0 0 417 0 2 476 274 0 Pantoea dispersa (SP807) 0 0 0 0 0 0 0 0 0 0 261 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 170 Eikenella corrodens (SP817) 101 150 0 0 578 32 0 5 580 2 0 0 0 0 0 38 0 367 0 103 0 0 302 371 1 0 0 0 0 0 Prevotella denticola (SP825) 0 4 8 9 0 0 9 0 9 0 1 0 2 1 2572 0 0 0 0 0 0 25 0 0 0 0 0 0 0 0 Selenomonas sputigena (SP83) 0 0 124 0 0 0 0 115 295 0 1 0 0 0 174 246 0 22 0 0 0 0 1431 2323 0 875 0 0 0 0 Alishewanella alkalitolerans (SP844) 0 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 Moraxella osloensis (SP847) 0 0 0 0 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35 624 0 0 0 0 0 0 0 0 Treponema maltophilum (SP85) 1 0 1080 0 109 0 0 556 0 0 0 0 440 8 5 24 0 15 0 0 0 0 0 0 4 0 0 0 0 0 Veillonellaceae_[G-1] bacterium_HMT_129 (SP868) 0 0 0 0 0 0 0 0 0 0 0 1 0 0 15 0 450 3 0 0 0 0 0 0 0 0 0 0 0 0 Cardiobacterium hominis (SP87) 1130 1 0 0 0 751 0 4 0 0 0 1 2 0 0 42 0 95 21 0 0 0 0 0 12 63 0 0 0 0 Streptococcus gordonii (SP9) 8 2 0 18 3 407 4 113 17 60 222 3720 2 1139 396 0 0 0 2 1 0 0 0 0 5 0 0 0 0 5019 Stomatobaculum longum (SP92) 0 1 10 2 2 1 0 1 34 4 4 0 0 2 9106 0 0 0 0 0 0 0 0 165 8 0 0 0 0 0 Leptotrichia sp._HMT_498 (SP93) 0 0 0 19 1 0 0 0 14 0 1 0 0 0 104 14 0 0 0 0 0 0 0 0 16 4034 0 0 0 490 Stenotrophomonas pavanii_nov_97.902% (SPN100) 7 276 7 2733 1322 479 0 0 3 10 7568 809 10 209 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47 Streptococcus gordonii_nov_95.814% (SPN102) 36 1 2 0 1 44 4 6 35 94 56 378 0 191 1 34 0 1 0 4 0 2 0 0 0 0 0 0 0 4 Abyssisolibacter fermentans_nov_87.042% (SPN170) 0 0 0 2 1 0 0 0 7 0 0 0 73 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 Filifactor villosus_nov_93.300% (SPN182) 0 30 54 0 7 0 0 25 0 0 6 0 204 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 Desulfobulbus sp._HMT_041_nov_97.907% (SPN195) 0 0 0 2 15 0 0 7 2 0 0 0 11 0 0 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0 Veillonella atypica_nov_90.000% (SPN203) 4 1 1 0 0 45 0 3 235 1406 22 100 2 1800 139 1 0 0 0 1 0 0 0 0 0 0 0 0 0 63 Comamonas faecalis_nov_97.674% (SPN205) 3 30 0 0 350 0 0 28 96 0 0 0 139 0 2 2 0 170 0 0 0 0 0 0 102 0 0 0 0 0 Peptostreptococcaceae_[XI][G-2] bacterium_HMT_091_nov_97.537% (SPN208) 0 0 15 0 0 0 0 31 0 0 0 0 32 0 0 4 0 13 0 130 0 0 0 0 0 0 0 0 0 0 Actinomyces oris_nov_86.480% (SPN214) 1 0 0 6 0 5 0 0 0 8 56 512 0 173 5 0 0 0 4 0 2 1 0 0 0 0 0 0 0 0 Pradoshia eiseniae_nov_93.764% (SPN216) 0 5060 0 0 0 0 97 0 0 0 0 29 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 Stomatobaculum longum_nov_96.758% (SPN221) 0 0 0 0 0 0 0 0 2 0 1 0 0 0 673 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 Streptococcus pseudoporcinus_nov_93.488% (SPN224) 34 0 0 42 0 314 51 3 2 32 0 48 0 24 3 2 0 0 0 3 3 1 0 0 0 0 0 0 0 13 Fretibacterium fastidiosum_nov_87.407% (SPN225) 0 0 0 0 6 0 0 3 0 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 21 0 0 0 0 0 Desulfobulbus sp._HMT_041_nov_90.255% (SPN232) 0 0 0 0 73 0 0 32 0 0 0 0 105 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0 0 0 Enterococcus faecalis_nov_97.669% (SPN300) 0 2 0 0 12 6 0 0 0 0 25 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 Enterococcus columbae_nov_94.651% (SPN59) 0 0 0 8 0 18 0 1 0 1612 4 7 0 0 0 0 0 0 1 0 5 0 0 0 0 0 0 0 0 40 Fusobacterium nucleatum_nucleatum_subsp._animalis_simiae (SPP1) 0 0 0 834 2236 0 0 1 9 0 0 0 0 3 1 0 5 1352 0 0 0 0 0 0 0 0 0 0 0 0 Streptococcus cristatus_cristatus_clade_578_downii_gwangjuense_i ...(20 species) (SPP10) 23 0 3 4 0 47 9 47 84 51 75 939 0 400 2 16 2 1 23 36 19 3 0 0 0 0 0 0 0 15 Streptococcus parasanguinis_parasanguinis_clade_721_sp._HMT_066 (SPP100) 0 7 1 0 3 2 0 4 89 12 1 7 1 7 6 0 0 0 0 0 6 0 0 0 0 0 0 0 0 382 Paracoccus carotinifaciens_hibiscisoli_marcusii_nototheniae (SPP101) 0 534 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 Fusobacterium nucleatum_nucleatum_subsp._nucleatum_simiae (SPP102) 4 0 4 253 379 0 0 2 1 0 0 0 0 4 0 3 0 26 0 0 0 0 0 0 13 0 0 0 0 0 Fusobacterium canifelinum_nucleatum_nucleatum_subsp._polymorphum (SPP104) 515 9 478 489 344 8 4 129 66 3 321 0 5 1 2 564 0 908 1 42 36 0 0 0 8 0 0 0 0 856 Pseudomonas brenneri_proteolytica (SPP108) 0 0 0 6 0 2 0 0 0 0 342 0 0 0 0 0 0 0 53 0 0 1 0 0 0 0 0 0 0 0 Selenomonas infelix_sp._HMT_479_sp._HMT_481 (SPP114) 1 0 0 0 0 0 0 3 38 0 0 0 0 0 6 333 0 6 0 0 0 0 313 118 0 0 0 0 0 0 Campylobacter rectus_showae (SPP118) 86 1 3391 0 120 0 0 1519 447 1 69 14 9168 8 223 619 1712 55 0 0 0 0 14 0 2163 0 0 0 0 0 Streptococcus cristatus_downii_gwangjuense_infantis_infantis_cla ...(17 species) (SPP12) 2215 54 560 453 69 1077 1302 2049 5654 822 1958 34781 76 12437 560 3228 1635 818 5108 16414 18314 15539 49 100 4 0 0 0 0 3331 Acinetobacter_Prolinoborus fasciculus_lwoffii (SPP122) 0 21 0 255 192 0 0 0 0 0 0 0 0 0 0 0 0 5 1820 398 728 795 0 0 0 0 0 0 0 0 Ralstonia insidiosa_sp._HMT_406 (SPP123) 0 0 2 0 0 0 0 0 0 0 22 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 Streptococcus salivarius_vestibularis (SPP129) 0 3 2 0 90 27 257 0 209 38 108 233 0 42 3 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 Streptococcus lactarius_peroris (SPP131) 0 0 0 0 0 0 0 0 162 0 5 0 1 16 3 0 0 0 0 0 14 0 0 0 0 0 0 0 0 68 Micrococcus antarcticus_endophyticus_luteus_yunnanensis (SPP133) 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 Bacillus albus_anthracis_cereus_fungorum_gaemokensis_homini ...(21 species) (SPP139) 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 88 0 0 1 0 0 0 0 0 0 0 2027 Methylobacterium brachiatum_fujisawaense_longum_mesophilicum_oryzae ...(8 species) (SPP149) 0 0 0 0 0 0 186 0 0 0 0 0 0 0 0 0 0 0 32 0 13 8 0 0 0 0 0 0 0 0 Aerococcus urinaeequi_viridans (SPP162) 0 0 0 0 122 34 0 0 0 0 0 0 0 0 0 0 0 97 0 0 0 0 0 0 0 0 0 0 0 0 Streptococcus pneumoniae_pseudopneumoniae (SPP163) 56 0 8 3 0 0 32 3 19 0 1 15 2 383 7 0 0 0 1 7 0 0 0 0 0 0 0 0 0 0 Fusobacterium nucleatum_periodonticum_sp._HMT_203 (SPP19) 0 0 23 583 387 0 0 3 15 0 0 0 0 0 1 2 0 286 0 0 0 0 0 0 0 0 0 0 0 0 Fusobacterium nucleatum_nucleatum_subsp._animalis (SPP2) 32 31 214 93 1748 8 260 447 825 26 188 21 667 230 77 127 206 599 0 0 0 1 0 0 0 0 0 0 0 0 Neisseria elongata_flava_macacae_mucosa_sicca (SPP20) 5 0 0 0 0 407 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 9 Neisseria flava_macacae_mucosa_sicca (SPP23) 82 3 0 1 0 13635 1 450 2 16 0 61 0 1 2 1 0 0 0 0 192 0 0 0 0 0 0 0 0 596 Veillonellaceae_[G-1] bacterium_HMT_135_bacterium_HMT_483 (SPP32) 1 0 29 124 0 73 328 0 0 0 213 72 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 Parvimonas_Peptostreptococcus Candidatus massiliensis_sp._HMT_110_sp._HMT_393 (SPP36) 1725 3181 387 12322 1 0 2424 0 3 1 0 0 2 2 577 0 0 0 0 1 0 0 56 34 1 0 0 0 0 0 Staphylococcus capitis_caprae (SPP39) 0 13 1 133 77 98 13 0 1 0 143 61 0 5 0 0 1 1 0 0 17 2 0 0 0 0 0 0 0 7 Staphylococcus capitis_caprae_epidermidis (SPP40) 0 14 14 744 862 229 59 0 1 1 828 119 6 20 0 0 494 38 27 10 217 23 0 1 1 4 0 0 0 470 Haemophilus parainfluenzae_pittmaniae (SPP42) 0 0 0 1 0 0 0 1 2 15 135 500 1 290 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 Peptoanaerobacter_Peptostreptococcaceae_[XI][G-7] [Eubacterium] yurii_[Eubacterium]_yurii_subsps._yurii_&_margaretiae (SPP44) 444 1707 31 0 309 176 0 83 511 0 2 1 68 1 0 42 0 385 0 231 0 0 0 0 0 0 0 0 0 0 Catonella morbi_sp._HMT_164 (SPP47) 2 1799 259 1 0 0 0 443 18 2 1 0 0 0 24 335 0 142 0 0 0 0 32 289 0 0 0 0 0 0 Veillonellaceae_[G-1] bacterium_HMT_132_bacterium_HMT_150 (SPP59) 0 0 4 0 0 0 0 0 6 0 0 0 0 0 6 7 0 5 0 0 0 1 0 0 0 0 0 0 0 0 Aggregatibacter segnis_sp._HMT_512 (SPP61) 0 0 0 0 0 0 1 3 0 117 0 0 2 0 0 584 0 0 0 57 0 0 0 0 0 0 0 0 0 0 Pseudomonas azotoformans_lactis_paralactis (SPP62) 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 5 22 3600 345 530 291 0 0 64 6 0 0 0 0 Streptococcus lactarius_sinensis (SPP67) 10 0 8 15 0 95 40 7 28 67 381 223 5 684 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 Leptotrichia_Pseudoleptotrichia goodfellowii (SPP68) 75 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 349 0 0 0 0 0 0 0 0 0 0 0 0 Streptococcus cristatus_cristatus_clade_578 (SPP7) 148 2 47 411 13 2069 190 301 433 2177 806 2662 6 1687 104 182 1 2 376 167 135 5 71 301 0 0 0 0 0 435 Lachnoanaerobaculum gingivalis_umeaense (SPP70) 356 0 0 408 10 0 1 3 1 0 0 0 0 0 21 358 0 42 0 0 0 0 162 0 0 0 0 0 0 0 Fusobacterium naviforme_nucleatum_sp._HMT_204 (SPP72) 7 4 69 762 846 1 65 74 165 5 14 2 115 34 23 95 1 829 0 0 0 0 0 0 4 0 0 0 0 0 Fusobacterium canifelinum_naviforme_nucleatum_nucleatum_subsp._p ...(5 species) (SPP73) 2 2 2 0 0 0 6 0 1026 0 2 0 0 0 0 3 0 2 0 0 0 0 0 0 0 0 0 0 0 0 Fusobacterium naviforme_nucleatum_nucleatum_subsp._vincentii (SPP74) 2 254 0 0 3 1 1018 39 648 0 0 0 2 0 0 0 0 221 0 0 0 0 0 0 0 0 0 0 0 0 Pinus_Triticum aestivum_sylvestris (SPP75) 0 1 3 0 0 0 0 1 2 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 Streptococcus anginosus_constellatus (SPP78) 13 64 0 0 0 0 0 19 135 0 0 0 0 0 355 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 Haemophilus haemolyticus_sp._HMT_036 (SPP79) 0 0 0 0 0 0 0 42 0 36 452 532 2 91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 Streptococcus cristatus_cristatus_clade_578_downii_gwangjuense_i ...(18 species) (SPP8) 200 4 60 98 3 286 269 166 383 218 267 2574 12 1311 68 45 1 18 149 145 98 60 0 1 0 0 0 0 0 197 Selenomonas sp._HMT_134_sputigena (SPP80) 0 0 31 0 0 0 0 0 6 0 0 0 0 0 8 0 0 0 0 0 0 0 16 237 0 0 0 0 0 0 Sphingomonas aerolata_aurantiaca_faeni_ginsenosidivorax_olei_pa ...(6 species) (SPP81) 3 2 2 1 1 2 3 1 0 4 3 7 1 1 3 0 446 7 391 272 198 81 10 0 1 172 0 0 0 0 Enterobacter asburiae_cancerogenus_cloacae_hormaechei (SPP88) 8 9 0 6 8 19 7 8 2 10 10 7 6 7 5 0 0 0 0 44 0 198 0 0 0 0 0 0 0 0 Fusobacterium nucleatum_nucleatum_subsp._vincentii (SPP94) 410 652 245 777 6727 1 3044 1250 1585 7 354 24 6584 32 3 137 0 872 1 67 0 0 0 0 0 0 0 0 0 0 Streptococcus multispecies_sppn14_4_nov_90.531% (SPPN14) 14 0 2 0 0 94 0 10 103 1398 25 208 2 1557 103 1 0 0 0 1 0 0 0 0 0 0 0 0 0 65 Enterococcus multispecies_sppn23_2_nov_96.512% (SPPN23) 64 0 0 6 0 9 0 4 2 42 5 177 0 13 1 1 0 0 0 5 1 0 0 0 0 0 0 0 0 4 Streptococcus multispecies_sppn34_17_nov_95.592% (SPPN34) 205 0 0 115 1 98 1 10 7 395 20 706 0 105 5 0 0 1 0 5 0 7 0 0 0 0 0 0 0 12 Streptococcus multispecies_sppn4_2_nov_94.676% (SPPN4) 0 0 0 0 0 22 0 1 0 1685 0 26 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 34