taxon	lfc: BTO vs. Commercial	lfc: HA vs. Commercial	lfc: HealthyPlaque_inoculum vs. Commercial	lfc: HA vs. BTO	se: BTO vs. Commercial	se: HA vs. Commercial	se: HealthyPlaque_inoculum vs. Commercial	se: HA vs. BTO	W: BTO vs. Commercial	W: HA vs. Commercial	W: HealthyPlaque_inoculum vs. Commercial	W: HA vs. BTO	p: BTO vs. Commercial	p: HA vs. Commercial	p: HealthyPlaque_inoculum vs. Commercial	p: HA vs. BTO	q: BTO vs. Commercial	q: HA vs. Commercial	q: HealthyPlaque_inoculum vs. Commercial	q: HA vs. BTO	diff: BTO vs. Commercial	diff: HA vs. Commercial	diff: HealthyPlaque_inoculum vs. Commercial	diff: HA vs. BTO	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Veillonella parvula_group (SP1) 	-0.203070978629756	-0.360992395454275	-5.06135232562393	-0.157921416824519	-4.85828134699418	-4.70035993016966	0.28839482551631	0.288394681918838	0.493163975147291	0.314203450455826	0.508687548601651	0.508687467190653	-0.704142240645964	-1.25173041698414	-10.2630211870449	-0.502608792473209	-9.55061974752335	-9.2401724700011	0.481344196727701	0.210668112639527	1.034194762226e-24	0.615239346306523	1.28922720129455e-21	2.4610023073927e-20	1	1	2.55963203650935e-23	1	3.06191460307456e-20	5.59878024931838e-19	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE
Streptococcus sanguinis (SP10) 	0.593892275476593	0.21928566198747	1.98954591157752	-0.374606613489123	1.39565363610093	1.77026024959005	0.888213885866789	0.888213762302641	1.32953107059395	0.901106171418846	1.33817843066611	1.3381783486506	0.668636558070724	0.246883882342675	1.49642678955123	-0.415718619371214	1.04295033017847	1.32288812726282	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Streptococcus sp._oral_taxon_058 (SP11) 	1.58131186560809	0.132521732510244	-1.20879454314756	-1.44879013309784	-2.79010640875564	-1.3413162756578	0.932244172330179	0.932244049315058	1.39144125168137	0.944822579572843	1.39989981651115	1.39989973459091	1.69624215687564	0.142153476450304	-0.868735594612342	-1.53339914225256	-1.99307577288579	-0.95815167509105	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Actinomyces sp._oral_taxon_180 (SP112) 	-0.81699243957956	-0.12029997504094	-0.37718860350984	0.69669246453862	0.43980383606972	-0.2568886284689	0.560621996972518	0.560621866947314	0.870338798070418	0.577331632691995	0.881194961307641	0.88119487858476	-1.45729643858339	-0.214583094476844	-0.433381350281161	1.20674569881104	0.499099354150955	-0.291523061143382	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Streptococcus australis (SP118) 	0.00174506933869447	0.174915304969314	1.04053217252891	0.173170235630619	1.03878710319021	0.865616867559594	0.172580823835167	0.172580670178095	0.334396384078904	0.209041164339768	0.354591401974796	0.354591327189409	0.0101116062602714	1.01352778841807	3.11167291893738	0.828402559742513	2.9295326886241	2.44116762364358	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Porphyromonas sp._oral_taxon_279 (SP12) 	-0.555167139808165	1.44743176624633	0.0380816660468509	2.0025989060545	0.593248805855016	-1.40935010019948	1.23191472718234	1.23191460691862	1.813421812639	1.24294251046386	1.82093139797568	1.82093131661366	-0.450653870400556	1.17494488507347	0.020999894112574	1.61117580997945	0.325794154856426	-0.773972135764249	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Granulicatella adiacens (SP13) 	0.0831606565514129	1.11264975469116	-4.06859276107868	1.02948909813975	-4.1517534176301	-5.18124251576985	0.352280001982624	0.352279862928548	0.581021127151705	0.37481511161322	0.594954465707512	0.594954383371859	0.23606408562333	3.15842564897568	-7.00248677879208	2.74665846237839	-6.97827087102016	-8.70863827644322	0.813382941926713	0.00158623766069507	2.51458621968292e-12	0.0060205794042409	2.98835087566291e-12	3.07547001333374e-18	1	0.0345006691201178	5.97214227174694e-11	0.124927022637999	6.79849824213313e-11	7.61178828300102e-17	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE
Actinomyces meyeri (SP139) 	-0.419608747773664	-0.328174283227356	-1.48750196664649	0.0914344645463082	-1.06789321887283	-1.15932768341913	0.376048885725135	0.37604874808597	0.613833465578967	0.397621590212517	0.627281269870854	0.627281187357551	-1.11583563654106	-0.872690801120101	-2.42329890769882	0.229953470326999	-1.70241528029792	-1.84817862672217	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Rhizobium loti (SP167) 	0.184847117450046	0.0931795338850036	-0.872986563879282	-0.0916675835650428	-1.05783368132933	-0.966166097764286	0.243329616244768	0.24332946872151	0.431474617943187	0.272313902202065	0.448459559953228	0.448459479908619	0.759657292452666	0.382935673079726	-2.02326284693351	-0.336624692400106	-2.35881621397402	-2.15441113645576	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Streptococcus oralis (SP17) 	0.703697556030058	0.677666725300746	-1.19475632536159	-0.0260308307293126	-1.89845388139165	-1.87242305066234	0.896223028288129	0.89622290482756	1.34079027998016	0.909055981328765	1.34940203680791	1.34940195480995	0.785181292846477	0.756136360330061	-0.891083671474167	-0.0286350139748966	-1.40688529408371	-1.38759473705227	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Streptococcus sp._oral_taxon_423 (SP2) 	0.732150831760805	1.61962338581847	-3.75631082535614	0.887472554057664	-4.48846165711695	-5.37593421117461	0.527219725056674	0.527219593984299	0.823742500602315	0.544571824868014	0.834954896660692	0.834954813897015	1.38870151658704	3.07200909127574	-4.56005465616932	1.62967034563853	-5.37569355550587	-6.43859298934193	0.164923532844481	0.00212623249274932	5.11403085145703e-06	0.103171188038792	7.62884483641837e-08	1.2058607524768e-10	1	0.0462455567172977	0.000116344201870647	1	1.81185064864936e-06	2.98450536238007e-09	FALSE	TRUE	TRUE	FALSE	TRUE	TRUE
Enterobacter hormaechei (SP21) 	0.204706537686625	-0.643231217283328	-3.38269244247744	-0.847937754969953	-3.58739898016406	-2.73946122519411	1.02139237270287	1.02139225066404	1.51687531066051	1.03341635790171	1.52499768758963	1.52499760585211	0.200419097652862	-0.62975924955877	-2.23003988442826	-0.820518998452508	-2.3523963408982	-1.79637083670266	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Streptococcus cristatus (SP22) 	-0.985712455029188	-1.71826780598088	-3.05690147639722	-0.732555350951696	-2.07118902136804	-1.33863367041634	1.16006775962115	1.16006763881995	1.7121729351016	1.17139559611956	1.71986827276551	1.71986819128394	-0.849702482336978	-1.48117898343303	-1.78539294350884	-0.625369732802828	-1.20427189347333	-0.778335035905866	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Streptococcus tigurinus (SP24) 	-0.649443275218621	-1.13225746421028	-0.511400262230471	-0.482814188991656	0.13804301298815	0.620857201979806	0.881181849235469	0.881181725578947	1.31964635646522	0.894127095385649	1.3283254628819	1.32832538085089	-0.737013904430841	-1.28493071445208	-0.387528264466474	-0.539983847356076	0.103922582865088	0.46739843334327	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Staphylococcus caprae (SP283) 	0.00174506933869475	0.00162850982932771	-1.58600853495409	-0.000116559509367041	-1.58775360429278	-1.58763704478342	0.130425140764087	0.13042499172599	0.273081782027079	0.17362632321824	0.296157190226145	0.296157124591049	0.0133798539796191	0.012486179280341	-5.80781523828206	-0.000671323951383407	-5.36118539982223	-5.36079301477458	0.989324739599878	0.990037729190234	6.32933056258663e-09	0.999464361024127	8.26776091072647e-08	8.28574118479723e-08	1	1	1.56650931424019e-07	1	1.96359321629754e-06	1.96359321629754e-06	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE
Propionibacterium acnes (SP285) 	0.0595073343853567	-0.0561337552173346	-0.637432877316965	-0.115641089602691	-0.696940211702322	-0.581299122099631	0.190114433692754	0.190114281229719	0.358632016215723	0.22434106832872	0.377892045518735	0.377891968815837	0.313007977508574	-0.295263221964408	-1.77740092488992	-0.51546999603856	-1.8442838899814	-1.53826799738875	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Streptococcus mitis (SP29) 	-0.172243374917061	-0.5770285443206	0.610337576753363	-0.404785169403539	0.782580951670425	1.18736612107396	0.722161952192622	0.722161826012446	1.09638244100922	0.736571396810136	1.10592684052904	1.10592675813433	-0.238510730721963	-0.799029419080171	0.556683100644649	-0.549553201707993	0.707624521795729	1.07363902025213	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Campylobacter showae (SP31) 	-0.673243089889437	0.835812493085868	1.79795697695943	1.50905558297531	2.47120006684887	0.962144483873564	0.663072908443463	0.66307278104974	1.01358678916806	0.678198857749018	1.0235459720301	1.02354588950198	-1.01533795351381	1.26051395408307	1.77385596988214	2.22509307665889	2.41435180673662	0.94001108669559	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Streptococcus dentisani (SP32) 	-0.0490742722478726	-0.00147278174784959	0.741024677488466	0.047601490500023	0.790098949736339	0.742497459236316	0.916195049537801	0.916194926328218	1.36887136198923	0.928884456475928	1.37739681868634	1.37739673673174	-0.0535631274941176	-0.0016074982577692	0.541339893627125	0.051245868275821	0.573617521848116	0.539058529351608	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Neisseria flava (SP40) 	0.268782030001648	-0.210369632411894	-0.391006862738275	-0.479151662413542	-0.659788892739924	-0.180637230326381	1.03793176062962	1.03793163875467	1.54015754144621	1.04986314351052	1.54822342891699	1.5482233472118	0.258959249728134	-0.202681587647044	-0.253874588940505	-0.456394402808886	-0.426158705789292	-0.116673883423662	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Streptococcus sp._oral_taxon_066 (SP42) 	0.277927236394738	1.69868038290827	-0.456307206423723	1.42075314651353	-0.734234442818461	-2.15498758933199	0.679801920658239	0.679801793627215	1.03701622476578	0.69471284554599	1.04685152222046	1.04685143972936	0.408835615123927	2.49878773317827	-0.440019351217755	2.04509410704351	-0.701374003126143	-2.05854193589218	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Streptococcus gordonii (SP45) 	0.313217537528976	0.0792583601630729	0.227927581001071	-0.233959177365903	-0.0852899565279045	0.148669220837998	0.461786613095727	0.461786479608539	0.73266189018994	0.480649641015704	0.744695085250316	0.744695002474702	0.678273316390067	0.17163421551506	0.311095177807026	-0.486756167905384	-0.114530038155463	0.199637731344986	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Streptococcus sp._Oral_Taxon_B66 (SP54) 	-0.956645841269796	-0.899000135732501	-0.308224478807602	0.0576457055372944	0.648421362462194	0.590775656924899	0.565008722182917	0.565008592287322	0.876462717190129	0.58163934366564	0.887274766555208	0.887274683838846	-1.69315234209798	-1.59112648551606	-0.351668670854301	0.0991090203320781	0.7308010854176	0.665831751638482	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Bacillus anthracis (SP66) 	-0.612913937489192	-1.85607515806495	-3.74130357105316	-1.24316122057576	-3.12838963356397	-1.88522841298821	0.621154199045761	0.621154070667519	0.954922648288442	0.636867702278322	0.965217775899642	0.965217693283384	-0.986733951780044	-2.98810753356302	-3.9179126997971	-1.95199288035567	-3.24112310369348	-1.95316396094567	0.323773081161581	0.00280710769063781	8.93190404860137e-05	0.0509390498998275	0.00119059756764097	0.0508001699698903	1	0.0638616999620102	0.00221064625202884	1	0.0282766922314731	1	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE
Neisseria elongata (SP69) 	0.959934932070227	0.962117639368196	-0.184073805765888	0.00218270729796999	-1.14400873783611	-1.14619144513408	0.708827948369263	0.70882782193111	1.07768942799371	0.723389011684938	1.08732207017623	1.08732198775088	1.35425660666832	1.3573361676846	-0.170804130563451	0.00301733543461763	-1.05213420127736	-1.05414169679855	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Methylobacterium sp._Oral_Taxon_B84 (SP70) 	-0.522900888895678	-1.43477371001892	-3.55361548808267	-0.91187282112324	-3.030714599187	-2.11884177806376	0.57969881972308	0.579698690249143	0.896977232319575	0.596073131137408	0.907645724656414	0.907645641963484	-0.902021655219974	-2.47503355476322	-3.96176776850072	-1.529800243442	-3.33909422680778	-2.33443722979832	0.367045364326087	0.0133223658453836	7.43968847184592e-05	0.12606618134194	0.000840520483012411	0.0195728392622491	1	0.303083822982477	0.00184132289678187	1	0.0199623614715448	0.425709253953918	FALSE	FALSE	TRUE	FALSE	TRUE	FALSE
Burkholderia cepacia (SP71) 	0.00590488914898351	-0.114191767200211	0.285880673298184	-0.120096656349194	0.2799757841492	0.400072440498394	0.491712614128948	0.49171248181255	0.77428202321263	0.509837756917688	0.785917314403269	0.78591723161894	0.0120088217778261	-0.23223280153328	0.369220341849105	-0.23555857666419	0.356240763523298	0.509051620708545	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Streptococcus anginosus (SP72) 	-0.305740810558298	0.069605973053894	-1.30660346536235	0.375346783612192	-1.00086265480405	-1.37620943841625	0.744736810213011	0.744736684450568	1.1280416060619	0.758901527552815	1.13744303785389	1.13744295551138	-0.410535381581111	0.0934638705292811	-1.15829368202457	0.494592209904427	-0.879923320549275	-1.20991512738986	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Acinetobacter septicus (SP75) 	0.00174506933869475	0.00162850982932771	-1.58600853495409	-0.000116559509367041	-1.58775360429278	-1.58763704478342	0.130425140764087	0.13042499172599	0.273081782027079	0.17362632321824	0.296157190226145	0.296157124591049	0.0133798539796191	0.012486179280341	-5.80781523828206	-0.000671323951383407	-5.36118539982223	-5.36079301477458	0.989324739599878	0.990037729190234	6.32933056258663e-09	0.999464361024127	8.26776091072647e-08	8.28574118479723e-08	1	1	1.56650931424019e-07	1	1.96359321629754e-06	1.96359321629754e-06	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE
Streptococcus sp._oral_taxon_064 (SP8) 	0.801969951301898	-0.557801699172839	-2.09016414250536	-1.35977165047474	-2.89213409380726	-1.53236244333252	0.841549714061158	0.841549589857496	1.26395304129702	0.854809549071258	1.27282007510805	1.27281999298839	0.952968004031211	-0.662826892075717	-1.65367230760449	-1.59073053401441	-2.27222539176382	-1.20391135570927	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Haemophilus parainfluenzae (SP9) 	-0.162768200512282	0.214264288492071	0.923677914901994	0.377032489004353	1.08644611541428	0.709413626409923	1.08533933976914	1.08533921833792	1.60690886598114	1.09702062957204	1.61482170731417	1.61482162569893	-0.149969870756647	0.197416885773457	0.574816614965914	0.34368769268399	0.672796328222074	0.439313924906644	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Actinomyces odontolyticus (SP91) 	0.089650238869425	0.476810275936764	-1.53181070446172	0.387160037067338	-1.62146094333115	-2.00862098039848	0.621881735604494	0.621881607244335	0.955940239287222	0.637584394367655	0.9662292003458	0.966229117730997	0.144159626721118	0.766721945756833	-1.60241262111101	0.60722947501141	-1.67813283095858	-2.07882472545988	1	1	1	1	1	1	1	1	1	1	1	1	FALSE	FALSE	FALSE	FALSE	FALSE	FALSE
Granulicatella adiacens_nov_96.400% (SPN34) 	-0.296881508865981	0.0931795338850034	-2.23120870343874	0.390061042750985	-1.93432719457276	-2.32438823732374	0.282774746459801	0.282774602405242	0.485459129085417	0.308932428214204	0.501147019794843	0.501146938511341	-1.04988692442585	0.329518751303799	-4.596079401457	1.26260957778291	-3.8597998554688	-4.6381371583918	0.293770103948149	0.741763623146781	4.30514697768144e-06	0.206729524122281	0.000113479931231629	3.51563461998276e-06	1	1	0.000102247240719934	1	0.00258166843551956	8.70119568445733e-05	FALSE	FALSE	TRUE	FALSE	TRUE	TRUE