GroupWeek 1 Foam_sqAfter...1 GroupWeek 1 Bead...2 GroupWeek 1 Liquid...3 GroupWeek 1 Calgary...4 GroupWeek 1 Calgary_ctrlReps...5 GroupWeek 1 Foam_sqAfter...6 GroupWeek 1 Bead...7 GroupWeek 1 Liquid...8 GroupWeek 1 Calgary...9 GroupWeek 1 Calgary_ctrlReps...10 GroupWeek 1 Foam_sqAfter...11 GroupWeek 1 Bead...12 GroupWeek 1 Liquid...13 GroupWeek 1 Calgary...14 GroupWeek 1 Calgary_ctrlReps...15 GroupWeek 1 Foam_sqAfter...16 GroupWeek 1 Bead...17 GroupWeek 1 Liquid...18 GroupWeek 1 Calgary...19 GroupWeek 1 Calgary_ctrlReps...20 GroupWeek 1 Foam_sqAfter...21 GroupWeek 1 Bead...22 GroupWeek 1 Liquid...23 GroupWeek 1 Calgary...24 GroupWeek 1 Calgary_ctrlReps...25 GroupWeek 1 Foam_sqAfter...26 GroupWeek 1 Bead...27 GroupWeek 1 Liquid...28 GroupWeek 1 Calgary...29 GroupWeek 1 Calgary_ctrlReps...30 1 Coefficients Coefficients Coefficients Coefficients Coefficients Standard Errors Standard Errors Standard Errors Standard Errors Standard Errors Test Statistics W Test Statistics W Test Statistics W Test Statistics W Test Statistics W p Values p Values p Values p Values p Values Adjusted p Values Adjusted p Values Adjusted p Values Adjusted p Values Adjusted p Values Differential Abundance Differential Abundance Differential Abundance Differential Abundance Differential Abundance Stomatobaculum longum (SP1) 2.75520356128895 2.03746222861005 -1.42391661728291 -1.29128868540565 -2.39858439812906 1.36788623394488 1.38586310098652 1.82042100496141 1.526253427264 1.53703259918714 2.01420519697983 1.47017568124852 -0.782190830254178 -0.846051292884198 -1.56052929482274 0.0439879942923578 0.141514179298737 0.434102432665649 0 0.118634852731436 1 1 1 0 1 FALSE FALSE FALSE TRUE FALSE Veillonella atypica (SP10) 1.83025545077477 -0.272933385207103 2.10172197683589 -1.6275337735377 -2.7430211985079 1.22423650325743 1.7017723976639 1.24912224349946 1.38257150131852 1.41955711021591 1.49501787106074 -0.160381838124635 1.68255908320698 -1.17717873685778 -1.93230774497737 0.134909778179487 0.872580295499371 0.0924604782088102 0 0.0533215330518633 1 1 1 0 1 FALSE FALSE FALSE TRUE FALSE Tannerella sp._HMT_286 (SP101) 0.394866353277037 -4.00469142894566 -2.87168098093954 -2.27060553036541 -3.89607959811804 0.198960825461436 0.220611922271994 0.854476388135468 0.338225316380902 0.278856819523027 1.98464372250794 -18.1526518952509 -3.3607493674644 -6.71329264959073 -13.9716131195289 0.0471841242224921 0 0.000777313265799232 0 0 1 0 0.0551892418717455 0 0 FALSE TRUE FALSE TRUE TRUE Eikenella corrodens (SP102) -0.084262853212367 -0.0933624789189532 -0.0463842102533259 1.6407234196613 2.91658510161361 0.238766681378143 0.272322735760518 0.314336763736006 0.401448144152709 0.764847356968711 -0.352908758986003 -0.342837621171142 -0.147562155002274 4.08701209249375 3.81329042329805 0.724156844087794 0.731720621668235 0.882688323987688 4.36964352055128e-05 0 1 1 1 0.00262178611233037 0 FALSE FALSE FALSE TRUE TRUE Streptococcus cristatus (SP106) 1.78556107851595 4.2173805143134 2.24259355123397 1.6407234196613 1.54152655895527 0.818491788777835 0.243323927751798 0.890032676708679 0.401448144152709 0.770630755109465 2.18152595175345 17.3323706931746 2.51967552419202 4.08701209249375 2.00034393739749 0 0 0 4.36964352055123e-05 0 0 0 0 0.00262178611233037 0 TRUE TRUE TRUE TRUE TRUE Solobacterium moorei (SP107) -1.30696608408822 2.1006888449704 2.15388399540834 4.63784365791666 2.03942375029138 1.62063817482076 1.21094296838483 1.24709894861882 1.35599142979528 1.40491899366938 -0.806451498177728 1.73475456715548 1.72711555710458 3.42026030254251 1.4516308480995 0.419982563366794 0.0827842865738325 0.0841469121733635 0.000625612415974026 0.146604276564406 1 1 1 0.0256501090549351 1 FALSE FALSE FALSE TRUE FALSE Bacteroidales_[G-2] sp._Oral_Taxon_274 (SP108) -0.607247023983518 -1.22048144019442 -3.85304304202461 -3.12939266474204 -4.75486673249467 0.299525792422868 0.264713285421163 0.766222419328964 0.384664063830447 0.324031295593998 -2.02736138037225 -4.61057871822571 -5.02862216613159 -8.13539126473073 -14.674097215759 0.0426254684646325 4.0154955080862e-06 4.9401672944595e-07 0 0 1 0.000265022703533689 3.75452714378922e-05 0 0 FALSE TRUE TRUE TRUE TRUE Streptococcus parasanguinis_I (SP109) 0.265677854953858 0.359798555637457 0.680437008326361 1.67584359154724 -0.935224938235433 0.319832627696734 0.291537702243748 0.31354587863014 0.495724310552048 0.632689087338268 0.830677773143815 1.23414074017994 2.17013539230412 3.38059593987026 -1.47817459942282 0.406155685996014 0.217150464786074 0.0299965907128633 0.000723288194799623 0.139361050785012 1 1 1 0.0289315277919849 1 FALSE FALSE FALSE TRUE FALSE Mogibacterium vescum (SP11) 0.597477293219426 0.908290902726175 0.637773178450868 -3.28962497840443 -4.39976988670728 0.226707267704647 0.278570478398111 0.274182247373102 0.383375667606591 0.628857830281697 2.6354571658365 3.26054256699849 2.3260921688449 -8.58068275157241 -6.99644605639465 0.00840240300518246 0.00111199274726553 0.020013634237164 0 2.6253678836426e-12 0.621777822383502 0.0689435503304627 1 0 1.86401119738624e-10 FALSE FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP112) -0.0842628532123673 3.11881176163874 -0.0463842102533263 1.6407234196613 0.01524935190867 0.238766681378144 0.337281792656007 0.314336763736005 0.401448144152709 0.340509845635332 -0.352908758986004 9.24690223293376 -0.147562155002276 4.08701209249375 0.0447838795386881 0.724156844087793 0 0.882688323987687 4.36964352055118e-05 0.964279574465101 1 0 1 0.00262178611233037 1 FALSE TRUE FALSE TRUE FALSE Leptotrichia sp._HMT_215 (SP113) 2.27451936110903 2.52230732542687 2.658697689334 0.944386422095965 -1.58764831736419 1.29143454362176 1.29693421777955 1.3165933839574 1.69653554784888 1.46764713533696 1.76123472331029 1.94482286830651 2.01937646180669 0.556655840953876 -1.08176432818075 0.0781986832358163 0.0517963007892103 0.043448106122408 0.577762593361566 0.279357260959419 1 1 1 1 1 FALSE FALSE FALSE FALSE FALSE Streptococcus sp._Oral_Taxon_71 (SP115) -1.47564637170918 -2.69818092540423 -3.77363460006742 3.80527274900553 2.38969775415601 1.10745407997734 1.00708360127598 0.338412164768407 0.425496258162537 0.399498993710125 -1.33246732157 -2.67920252299373 -11.1510016274087 8.94314033556538 5.98173660454815 0.182706672792196 0.00737977438121252 0 3.78264907621488e-19 2.20771071383385e-09 1 0.435406688491539 0 2.91263978868546e-17 1.52332039254536e-07 FALSE FALSE TRUE TRUE TRUE Peptostreptococcaceae_[XI][G-4] bacterium_HMT_369 (SP116) -0.34631349812173 -0.137069133920452 -3.7305283097696 -3.46431397220209 -5.08978803995471 0.33429980562657 0.265179255323708 1.13825351319439 0.425757367889762 0.364461473338119 -1.0359368814847 -0.516892370608439 -3.27741427241482 -8.13682682550565 -13.9652292829119 0.300231589971789 0.605231293766551 0.00104762537677992 0 0 1 1 0.0712385256210346 0 0 FALSE FALSE FALSE TRUE TRUE Streptococcus peroris (SP12) 4.28662935072589 -0.0933624789189527 2.23663788395783 1.6407234196613 0.0152493519086705 0.331607122938475 0.272322735760517 0.889890726751878 0.401448144152709 0.340509845635332 12.926831344094 -0.34283762117114 2.51338486481549 4.08701209249376 0.0447838795386895 0 0.731720621668236 0 4.36964352055115e-05 0.9642795744651 0 1 0 0.00262178611233037 1 TRUE FALSE TRUE TRUE FALSE Treponema socranskii (SP121) 0.814137832995753 -1.37674501282231 -1.32976674415668 0.357340885757942 -1.26813318199468 1.36006550921869 1.01270481349027 1.03843746289283 1.16429726119971 1.10084955812892 0.598601925773006 -1.35947315988099 -1.28054581202442 0.306915508321074 -1.15195866013708 0.549438371558718 0 0 0 0 1 0 0 0 0 FALSE TRUE TRUE TRUE TRUE Mogibacterium neglectum (SP128) 3.7511445040341 3.17300491142655 -0.161809622492603 0.402866064093193 -0.706129406267081 1.24337789407596 1.27773413272432 1.50654167994188 1.40143936890603 1.41903936466244 3.01689817866823 2.4833060573104 -0.107404676981022 0.28746592469974 -0.497610865386427 0.00255375576584431 0.0130169194782177 0.914467944277512 0 0.618758343955337 0.194085438204167 0.754981329736629 1 0 1 FALSE FALSE FALSE TRUE FALSE Peptostreptococcaceae_[XI][G-4] bacterium_HMT_103 (SP13) -0.0468475704896405 -1.10219712299253 -2.28484533903155 -0.597737709116929 -2.22321177686955 1.44992469822856 1.54031699647356 1.07180794067614 1.1980398367779 1.13457100151528 -0.0323103472524307 -0.71556512426723 -2.13176750453087 -0.498929744043013 -1.95951753914064 0.974224557599984 0.474259914895363 0 0 0 1 1 0 0 0 FALSE FALSE TRUE TRUE TRUE Streptococcus sp._HMT_064 (SP132) 2.79657635068328 2.64810030191542 -1.42209567193502 5.4367214320292 3.886138941257 1.08784185788119 1.10026363420215 1.11217934238481 1.25191901408339 1.1811920917617 2.57075633781018 2.40678708229385 -1.27865679368372 4.34271016804531 3.29001435783487 0.0101476696359214 0.0160935495483445 0 1.4073574553694e-05 0.00100182270704619 0.74077988342226 0.917332324255639 0 0.000858488047775334 0.0581057170086792 FALSE FALSE TRUE TRUE FALSE Treponema maltophilum (SP153) -1.84701853011054 -1.02781593922113 -1.8091398871515 -0.122032257236882 -1.74750632498951 0.841899275380773 1.10061904750884 0.877122289051238 1.00073456144587 0.937415026754595 -2.19387114839263 -0.933852581915156 -2.06258569612728 -0.12194268284346 -1.86417571205308 0 0.350379941559669 0 0 0 0 1 0 0 0 TRUE FALSE TRUE TRUE TRUE Absconditabacteria_(SR1)_[G-1] bacterium_HMT_345 (SP159) -1.46530776200955 -0.450176282819426 -2.4260065435685 -0.738898913653882 -2.36437298140651 1.22959960965624 1.13933382752945 0.897834271488286 1.02178583779255 0.958446892486385 -1.19169504487661 -0.395122370583514 -2.70206498081996 -0.723144602640204 -2.46687949008097 0.233380841703189 0.692752579978262 0 0 0 1 1 0 0 0 FALSE FALSE TRUE TRUE TRUE Stomatobaculum sp._HMT_097 (SP164) 4.33530741388374 4.25136674991458 1.12906929795206 1.6407234196613 0.426336738326 0.267450080466928 0.261657545532321 1.1990269753667 0.401448144152706 0.54580664337471 16.2097816770701 16.2478278287963 0.941654625915949 4.08701209249378 0.781113135028862 0 0 0 4.36964352055069e-05 0 0 0 0 0.00262178611233037 0 TRUE TRUE TRUE TRUE TRUE Anaeroglobus geminatus (SP17) 2.51040710378542 -1.02759139671797 3.54140413139116 -0.562392994727832 -2.18786706248046 1.03481013437846 1.48546883447871 1.06996243820962 1.19027087146178 1.12680677209063 2.42595914012115 -0.691762339853185 3.30983967747227 -0.472491605240372 -1.94165239033945 0.01526798915229 0.489086590604897 0.000933494230987948 0 0 1 1 0.0644111019381684 0 0 FALSE FALSE FALSE TRUE TRUE Streptococcus sp._Oral_Taxon_B66 (SP172) 0.975088423570282 2.41643967369338 -0.0463842102533257 1.6407234196613 0.0152493519086709 0.904392398213066 1.09903043191806 0.314336763736004 0.401448144152707 0.340509845635332 1.07816963687101 2.19870133120531 -0.147562155002275 4.08701209249377 0.0447838795386908 0 0 0.882688323987688 4.36964352055086e-05 0.964279574465099 0 0 1 0.00262178611233037 1 TRUE TRUE FALSE TRUE FALSE Oribacterium sinus (SP18) -1.17029503255286 -1.17939465825945 1.52403619107829 0.554691240320802 -1.07078282743182 0.84670483515399 0.855129498138875 1.30561397259452 1.00553300659196 0.942208956443323 -1.38217591770339 -1.37920006364687 1.16729463920314 0.551639017997838 -1.13646003904892 0 0 0.243091402823301 0 0 0 0 1 0 0 TRUE TRUE FALSE TRUE TRUE Ruminococcaceae_[G-2] bacterium_HMT_085 (SP2) 0.31993974857392 1.10121977341605 0.526631584898505 -3.59621801787137 -4.72681609658617 0.226857965718254 0.235306743757894 0.295536031091342 0.381838562002597 0.61015038979126 1.41030863765775 4.67993290727397 1.78195390576839 -9.41816352704291 -7.74696890417995 0.158448569130899 2.8696881090839e-06 0.0747567487969162 0 9.41119911660759e-15 1 0.000198008479526789 1 0 6.96428734628962e-13 FALSE TRUE FALSE TRUE TRUE Parvimonas sp._Oral_Taxon_110 (SP20) -0.0842628532123677 6.27922588232077 1.38830415414806 8.10530443201826 7.00647880072371 0.238766681378147 0.376755250313097 1.40823529013569 0.470957176054352 0.400126310400457 -0.352908758986 16.6665915792879 0.985846728790818 17.210279074467 17.510667553232 0.724156844087796 0 0 0 0 1 0 0 0 0 FALSE TRUE TRUE TRUE TRUE Fusobacterium nucleatum (SP22) -0.666770230308053 -6.44635058802896 -0.00634504779252887 3.78977244995684 1.66539557738676 0.293650235033097 0.291877466416274 0.287799559728717 0.417021596805487 0.39146121937631 -2.27062726591349 -22.0858111014134 -0.0220467598995279 9.0877126724075 4.25430539464453 0.0231695514483125 0 0.982410655583664 1.01144419132585e-19 2.09698941177087e-05 1 0 1 7.8892646923416e-18 0.00138401301176877 FALSE TRUE FALSE TRUE TRUE Streptococcus sp._str._2136FAA (SP24) 0.929354716399119 0.979596129370446 1.95573350961392 0.554691240320801 -1.07078282743182 1.26380488764103 1.2838867562352 0.955039918623065 1.06026997559844 0.99689804542476 0.73536249581517 0.762992627358322 2.04780289438959 0.523160377155564 -1.07411468238518 0.462118756261895 0.44546779277475 0.0405793166410028 0 0 1 1 1 0 0 FALSE FALSE FALSE TRUE TRUE Streptococcus anginosus (SP25) -0.802482287996629 -1.11465685447123 -1.31616228071302 -0.897385696530033 -2.9732918069489 0.200613044436415 0.214618227329826 0.234590337319636 0.329408188940296 0.324662436874082 -4.00015009119199 -5.19367282238438 -5.61047098423203 -2.72423615034258 -9.15810229103303 6.33023222471299e-05 2.06185360616834e-07 2.01776703225277e-08 0.00644504046562912 5.28179365218993e-20 0.00500088345752326 1.44329752431784e-05 1.55368061483463e-06 0.238466497228277 3.96134523914245e-18 TRUE TRUE TRUE FALSE TRUE Oribacterium sp._HMT_102 (SP28) 1.17713369142705 4.59253188910267 1.14812210256538 1.6407234196613 0.0152493519086702 1.10546240409186 0.516665035211916 1.06354344396121 0.401448144152708 0.340509845635331 1.06483376283979 8.88879946601958 1.07952534434245 4.08701209249377 0.0447838795386888 0 0 0 4.36964352055093e-05 0.9642795744651 0 0 0 0.00262178611233037 1 TRUE TRUE TRUE TRUE FALSE Phocaeicola abscessus (SP29) 0.494293814313303 -0.465682954697723 -1.38216193866415 0.304945691250471 -1.32052837650215 1.33174998389888 1.32858405061182 1.0802547329277 1.20657681564853 1.14310286193296 0.371161119045928 -0.350510721909744 -1.27947779031546 0.252736242977256 -1.15521395359746 0.7105175305078 0.725955444986981 0 0 0 1 1 0 0 0 FALSE FALSE TRUE TRUE TRUE Haemophilus parainfluenzae (SP3) -0.0842628532123662 -0.0933624789189522 0.898020237765413 3.29500496308127 5.28882352521098 0.238766681378146 0.27232273576052 1.01349845917588 1.52804259317137 0.77742855119358 -0.352908758985996 -0.342837621171134 0.886059795784623 2.15635675196898 6.80297053290761 0.724156844087799 0.73172062166824 0 0 0 1 1 0 0 0 FALSE FALSE TRUE TRUE TRUE Granulicatella adiacens (SP30) 1.34129251979298 2.74556855821268 5.21553386666501 6.11631237449465 4.92763863982698 1.23772379439376 1.2619942234001 0.455081140643447 0.413339011513934 0.387861590961947 1.08367676687508 2.17557933887804 11.4606680015144 14.7973266595197 12.7046316383269 0 0 0 0 0 0 0 0 0 0 TRUE TRUE TRUE TRUE TRUE Granulicatella paradiacens (SP31) -0.0842628532123673 1.29809994437959 5.08411553314918 4.43259996202612 4.65624053225456 0.238766681378147 1.10476687584189 0.399224063513369 1.31637328689628 0.375722425592414 -0.352908758986 1.17499897287414 12.7349926965986 3.36728191475019 12.3927671469514 0.724156844087796 0 0 0 0 1 0 0 0 0 FALSE TRUE TRUE TRUE TRUE Peptoanaerobacter [Eubacterium] yurii (SP32) 0.879194399419687 4.42582357006211 2.18678256980057 1.6407234196613 0.0152493519086699 0.866909368339577 0.304245501956644 1.04099905507984 0.401448144152707 0.340509845635331 1.0141710673904 14.5468825063938 2.10065759342389 4.08701209249377 0.0447838795386879 0 0 0 4.36964352055088e-05 0.964279574465101 0 0 0 0.00262178611233037 1 TRUE TRUE TRUE TRUE FALSE Fusobacterium periodonticum (SP34) -0.0842628532123654 -0.0933624789189516 -0.0463842102533247 1.6407234196613 2.12062028735345 0.23876668137814 0.272322735760515 0.314336763736003 0.401448144152708 0.943261990932047 -0.352908758986001 -0.342837621171139 -0.147562155002272 4.08701209249377 2.24817739688424 0.724156844087795 0.731720621668237 0.88268832398769 4.36964352055091e-05 0 1 1 1 0.00262178611233037 0 FALSE FALSE FALSE TRUE TRUE Prevotella oralis (SP35) -1.00239151716661 -0.578387247264671 -4.0280746941399 2.57463678023204 0.683801398973786 0.198589940271364 0.26419449934959 1.24424589784413 0.4362364359551 0.357768873133049 -5.04754428042474 -2.18924787869763 -3.23736224577411 5.90192970606664 1.91129371592785 4.47525069249336e-07 0.0285788284121355 0.00120640167821677 3.59274248340697e-09 0.055966846177539 3.62495306091962e-05 1 0.0808289124405234 2.33528261421453e-07 1 TRUE FALSE FALSE TRUE FALSE Streptococcus oralis (SP36) 0.04224382972321 1.13493101438879 1.40542801677396 2.55445814998006 1.27844755637261 0.169165332914675 0.243367270661379 0.300668115815494 0.346250509179212 0.311348501604502 0.249719188886752 4.66344965493709 4.67435003196816 7.37748561304765 4.10616254706306 0.802804517662818 3.10952284465783e-06 2.9488602185907e-06 1.61306795533104e-13 4.02286445551978e-05 1 0.000211447553436732 0.000221164516394303 1.12914756873173e-11 0.00257463325153266 FALSE TRUE TRUE TRUE TRUE Actinomyces odontolyticus (SP37) 3.86218626870028 -0.0933624789189529 -0.0463842102533258 1.6407234196613 1.99713675997246 0.275423697868366 0.272322735760516 0.314336763736005 0.401448144152708 0.762078862993085 14.0227086434158 -0.342837621171142 -0.147562155002275 4.08701209249377 2.6206431603793 0 0.731720621668235 0.882688323987688 4.36964352055098e-05 0 0 1 1 0.00262178611233037 0 TRUE FALSE FALSE TRUE TRUE Staphylococcus epidermidis (SP38) -0.0842628532123667 -0.0933624789189529 -0.0463842102533259 1.6407234196613 1.87838097698976 0.238766681378143 0.272322735760515 0.314336763736005 0.401448144152711 0.930405074749535 -0.352908758986002 -0.342837621171144 -0.147562155002275 4.08701209249373 2.01888513720265 0.724156844087795 0.731720621668233 0.882688323987688 4.36964352055156e-05 0 1 1 1 0.00262178611233037 0 FALSE FALSE FALSE TRUE TRUE Lancefieldella rimae (SP39) -0.820257000825717 -6.63844042725819 -3.43484401705922 -4.90435452867795 -6.52982859643057 0.239762668879468 0.266327588723463 1.23790738895771 0.394499239199973 0.333680641750448 -3.42112058002688 -24.9258458692806 -2.77471808286989 -12.4318478753565 -19.569096253759 0.000623636756164678 0 0.00552495776611566 0 0 0.0480200302246802 0 0.364647212563634 0 0 TRUE TRUE FALSE TRUE TRUE Fusobacterium nucleatum_ss_polymorphum (SP4) -1.24230673687318 -6.10210135472939 -0.858184623023639 4.07682444386304 1.94103672277804 0.500721317246565 0.263434869838942 0.66657168959711 0.383950324411775 0.369497398572204 -2.48103424816133 -23.1636053285583 -1.28746035335276 10.618103917763 5.25318102449033 0.0131001785587773 0 0.197933879870964 2.45496900132989e-26 1.49494471874338e-07 0.943212856231966 0 1 1.96397520106391e-24 1.00161296155806e-05 FALSE TRUE FALSE TRUE TRUE Streptococcus sp._str._C300 (SP45) 1.09791612448764 -1.19995918126123 0.505407458953715 2.94186984024022 1.16186866347679 0.294359439427288 1.20633263472056 0.473974130060124 0.451412086740879 0.420564398947197 3.72984853695799 -0.994716669949982 1.0663186593952 6.51703825983046 2.76264150362064 0.000191594909303907 0.319874084499921 0.286279617381719 7.17091405822369e-11 0.00573357027574001 0.0149444029257047 1 1 4.80451241900987e-09 0.321079935441441 TRUE FALSE FALSE TRUE FALSE Catonella morbi (SP47) 0.340838880609103 0.203010563135843 0.97788867458953 1.64981747616033 -2.59891330794681 0.222398093946925 0.280295604667919 0.26796953941782 0.479792778730022 0.714298288028094 1.53256205824518 0.724273087964973 3.6492531080736 3.43860422519756 -3.63841458324284 0.125383796013279 0.46889809558961 0.000263003873431138 0.000584721403290288 0.000274321579114844 1 1 0.0191992827604731 0.0245582989381921 0.0164592947468906 FALSE FALSE TRUE TRUE TRUE Streptococcus sanguinis (SP49) 0.457713713481956 1.09777060670754 -1.13522503636518 -0.78724524681255 -0.612840165062172 0.292370434715422 0.255422202564377 0.558214239387287 1.12744734984953 0.665733563892675 1.56552667142104 4.29786680909563 -2.033672658747 -0.698254554341377 -0.920548697407976 0.117459468610802 1.72449730141373e-05 0.0419846106096645 0.485018014622942 0.357286097370431 1 0.00110367827290478 1 1 1 FALSE TRUE FALSE FALSE FALSE Veillonella parvula (SP5) 0.833665019042761 0.553543017489804 0.929771101412348 1.97249324898309 0.263222686084138 0.181732050349971 0.345957467441731 0.278866223474491 0.337280798393589 0.310881697283332 4.58733072915496 1.60003199694782 3.33411156728846 5.84822278166364 0.846697275472741 4.48949170128493e-06 0.109591485324493 0.00085572326977296 4.96852827791044e-09 0.397163877734691 0.000359159336102794 1 0.0599006288841072 3.17985809786268e-07 1 TRUE FALSE FALSE TRUE FALSE Campylobacter showae (SP50) -0.340014570783591 1.61420007276226 -1.15711904697839 0.529988582936227 0.222806914900868 1.14993521290293 1.46379720346127 0.901347065311224 1.0253544394346 1.10252042309207 -0.295681501851959 1.1027484332839 -1.28376636648709 0.516883296695407 0.202088696258339 0.767473325243958 0.270136427418918 0 0 0.839847384634804 1 1 0 0 1 FALSE FALSE TRUE TRUE FALSE Streptococcus mitis (SP53) 0.178556266909055 0.0491188593566927 1.12644461247509 0.738040019293892 0.639916723081841 1.23918777098523 1.24499680044986 1.07099252215521 0.914501037131629 1.0609734951528 0.144091372663476 0.0394530004727277 1.05177635620489 0.807041205342736 0.603141102021289 0.885428317246166 0.968529224506703 0.292902169221989 0 0.546414825412336 1 1 1 0 1 FALSE FALSE FALSE TRUE FALSE Erysipelotrichaceae_[G-1] bacterium_HMT_905 (SP54) -0.237440296338513 0.601970501823046 -1.02786386997547 0.659243759939151 -0.966230307813476 1.0085412921981 1.07634149207894 0.799692547299146 0.921858547259638 0.858622024901607 -0.235429424829018 0.559274641229662 -1.28532380781457 0.715124638046532 -1.12532672094476 0.813875450091729 0.575974299262209 0 0 0 1 1 0 0 0 FALSE FALSE TRUE TRUE TRUE Campylobacter concisus (SP55) -0.0511548556487369 -4.36977129700881 0.096684154883754 2.14814432694928 -0.064517811780225 0.170353296712982 0.19860505325331 0.387387699218919 0.468444973575661 0.596265492819789 -0.300286854647284 -22.0023167861465 0.249579826821285 4.58569191286738 -0.108203162110078 0.763958359305077 0 0.802912300834807 4.52485422488277e-06 0.913834536684051 1 0 1 0.000280540961942732 1 FALSE TRUE FALSE TRUE FALSE Peptostreptococcus stomatis (SP57) 0.18238379221928 0.0493386802663214 -1.67695137584122 -5.59341130781519 -3.52259068042286 0.229439840337924 0.275768772063936 0.409888282519633 0.384933121964892 0.987110198681542 0.794908992050643 0.178913224644893 -4.09124009481996 -14.53086520397 -3.56858908471202 0.426666443209525 0.858005838569629 4.29072631001524e-05 0 0.000358908820221664 1 1 0.00317513746941128 0 0.0211756203930782 FALSE FALSE TRUE TRUE TRUE Atopobium rimae (SP58) -0.637207580927469 -5.21813027456207 -2.45002823374314 -3.48404437598183 -5.10951844373445 0.296597781804877 0.26494182846656 1.0603095950845 0.392883073566066 0.332093630318608 -2.14838957004294 -19.6953810757771 -2.31067251027554 -8.86789126433558 -15.3857767125266 0.031682820655992 0 0.0208509507551823 0 0 1 0 1 0 0 FALSE TRUE FALSE TRUE TRUE Streptococcus constellatus (SP59) 0.0954026470318627 0.96333274131397 -1.0612250228278 0.625882607086823 -0.999591460665803 1.24687683220389 1.2637766475258 0.82582671613905 0.948515380654102 0.885248806035693 0.0765132886968762 0.762265027764178 -1.28504564224962 0.659854990074288 -1.12916442682612 0.939010742116025 0.445901842092345 0 0 0 1 1 0 0 0 FALSE FALSE TRUE TRUE TRUE Actinomyces sp._Oral_Taxon_180 (SP6) 0.536595780432522 0.528039783894249 -1.08478480342731 -2.69127107851285 -4.31674514626547 0.259007037185495 0.240257112178651 1.28954139816481 0.3772527037228 0.316774507589543 2.07174208957197 2.19781124939855 -0.841217509551149 -7.13386823196993 -13.6271860356227 0.0382894998836235 0.0279625594566126 0.400226093107844 0 0 1 1 1 0 0 FALSE FALSE FALSE TRUE TRUE Capnocytophaga sp._HMT_338 (SP60) 0.765279232122212 -0.797799585879866 -2.18971180175749 -1.79987760454641 -2.16277802499522 1.30619046920623 1.68365873230968 1.6301548868335 1.4517137661431 1.4713855296242 0.585886400309805 -0.473848750088107 -1.3432538340028 -1.23982953563106 -1.46989214006176 0.557951856954109 0.635607767863093 0.17918979530451 0 0.141590968666823 1 1 1 0 1 FALSE FALSE FALSE TRUE FALSE Dialister invisus (SP61) 2.2390007034215 3.83310563100468 -0.0463842102533265 1.6407234196613 0.0152493519086699 1.02864145851971 0.23754864614909 0.314336763736005 0.401448144152708 0.340509845635332 2.17665804238883 16.1360870421419 -0.147562155002277 4.08701209249376 0.0447838795386878 0 0 0.882688323987686 4.36964352055106e-05 0.964279574465101 0 0 1 0.00262178611233037 1 TRUE TRUE FALSE TRUE FALSE Prevotella salivae (SP63) -0.254698237244787 -1.16465087353879 0.14316091048203 -0.704150663729969 -3.67257394650961 0.279914562517859 0.310669885869652 0.245972643552912 1.50160686531528 0.880602943869333 -0.909914207227204 -3.74883735602054 0.582019644193621 -0.468931436046761 -4.17052199527345 0.36286775660633 0.000177656246628902 0.560553449079096 0.639118645371707 3.03902719853135e-05 1 0.0111923435376208 1 1 0.00197536767904538 FALSE TRUE FALSE FALSE TRUE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP66) 0.381858525798746 1.39724448148201 -0.264415665286696 -2.15025801107759 -4.97051500566132 0.284980852826132 0.317351327833535 0.361389106151351 1.26598149917315 0.902837372929176 1.33994449806675 4.40283168506208 -0.731664736944114 -1.69849086458371 -5.50543780607456 0.180263389839559 1.06847059110572e-05 0.464373224649942 0.0894151554406723 3.68251951697243e-08 1 0.00069450588421872 1 1 2.50411327154125e-06 FALSE TRUE FALSE FALSE TRUE Prevotella dentalis (SP67) -0.37259533237457 1.89467765307386 -1.02786386997547 0.659243759939148 -0.966230307813478 1.00654519514443 0.839963370806542 0.853752594910794 0.976959669053581 0.913663346292142 -0.370172481247705 2.25566699563884 -1.20393645196812 0.674791171858489 -1.05753427861002 0.711253979302349 0.0240914940195302 0 0 0 1 1 0 0 0 FALSE FALSE TRUE TRUE TRUE Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP68) 1.38012700144324 2.07930163145534 1.37002435717059 -1.04199294756044 -2.66746701531306 1.26799486838595 1.29246229180307 1.29853308287517 1.42525230657906 1.36167186706385 1.08843263947907 1.60879094472813 1.05505541232506 -0.731093675660467 -1.95896462270669 0.27640415859855 0.107662061587022 0.291399982596983 0 0 1 1 1 0 0 FALSE FALSE FALSE TRUE TRUE Streptococcus vestibularis (SP71) 1.28051866752833 -0.0933624789189525 2.38462168300427 1.6407234196613 2.54943079250371 1.18871008701257 0.272322735760519 1.19642668947338 0.401448144152706 0.959729781468364 1.07723378603314 -0.342837621171137 1.99311976570322 4.08701209249378 2.65640479406937 0 0.731720621668238 0 4.36964352055061e-05 0 0 1 0 0.00262178611233037 0 TRUE FALSE TRUE TRUE TRUE Prevotella saccharolytica (SP73) -0.458179695559633 0.0793706569888646 -0.697913215139224 1.83194023860201 -1.17118705548041 0.159944942552665 0.203298948313877 0.123666570678577 0.30595869822212 0.79047933990697 -2.86460883506065 0.390413514910676 -5.64350746777944 5.98754096303568 -1.4816162755351 0.00417524648763246 0.696230795771241 1.66620296053397e-08 2.13037299659084e-09 0.138442425905736 0.313143486572434 1 1.2996383092165e-06 1.40604617774995e-07 1 FALSE FALSE TRUE TRUE FALSE Streptococcus intermedius (SP77) 0.699281328661594 0.0467291242723979 1.00851334136239 0.118877142545167 -0.641354969175889 0.337561385664855 0.317867697665901 0.391300774557813 1.04440571310097 0.417346435890363 2.07156789359749 0.147008093667678 2.57733540778714 0.113822761647106 -1.53674480963909 0.0383057567018668 0.883125631909618 0.00995652863333407 0.909378294668218 0.124355813339813 1 1 0.63721783253338 1 1 FALSE FALSE FALSE FALSE FALSE Parvimonas micra (SP78) 1.74420484173759 0.456145250568996 -1.71106696706048 -1.47189447776376 -2.75396982506786 1.18695468572415 1.84352218371186 1.62275165572408 1.3380539385198 1.31179180353337 1.46947887961996 0.247431386830706 -1.05442318362448 -1.10002626605024 -2.09939551203928 0.141702946273464 0.804574386006445 0.291689212635518 0 0.0357820499960548 1 1 1 0 1 FALSE FALSE FALSE TRUE FALSE Oribacterium sp._Oral_Taxon_78 (SP80) 4.4812617658183 1.27692880913882 2.42913214721244 1.6407234196613 0.0152493519086704 0.2675326157748 1.08775798930556 1.22855430113014 0.401448144152708 0.340509845635331 16.7503380955632 1.17390892247459 1.97722814936051 4.08701209249376 0.0447838795386893 0 0 0 4.36964352055101e-05 0.9642795744651 0 0 0 0.00262178611233037 1 TRUE TRUE TRUE TRUE FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP83) 0.510635507479087 0.600389831539517 0.114428135681777 4.00739486859923 2.75329266652509 0.272918279324263 0.280311769260117 0.541259376669189 0.458995334188653 0.378126915916525 1.87101981129078 2.14186451437357 0.211410906885248 8.73079652472489 7.28139825712091 0.0613423350833694 0.0322043861148064 0.832566646616345 2.52885274154426e-18 3.30377770350037e-13 1 1 1 1.8966395561582e-16 2.41175772355527e-11 FALSE FALSE FALSE TRUE TRUE Slackia exigua (SP84) -3.90550792680552 -0.0821254598048507 -0.623633539055226 -2.18052165393186 -3.80599572168448 1.7330350639448 2.27926083298907 2.24172724118781 1.89124879526951 1.82753415409517 -2.2535654402258 -0.0360316198199878 -0.27819331790106 -1.15295336043882 -2.08258527653557 0 0.971257146346747 0.780863964031554 0 0 0 1 1 0 0 TRUE FALSE FALSE TRUE TRUE Peptostreptococcaceae_[XI][G-2] bacterium_HMT_091 (SP85) 1.30793136694066 2.72099926083522 -1.29227408301445 0.394833546900174 -1.23064052085245 1.4462050993724 0.979198814159045 1.00856793101893 1.13407159151165 1.07064413612685 0.904388573590459 2.77880162995506 -1.28129602703994 0.34815575123779 -1.14943936955971 0.365789394921356 0.00545598326184395 0 0 0 1 0.327358995710637 0 0 0 FALSE FALSE TRUE TRUE TRUE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_sulci (SP86) -0.0842628532123653 -0.0933624789189512 0.752914214012798 7.662015502583 3.51271537782151 0.238766681378145 0.272322735760518 0.754493460649127 0.568721175580463 0.872761703259998 -0.352908758985993 -0.342837621171133 0.99790687829823 13.4723583920764 4.02482758432294 0.724156844087801 0.731720621668241 0 0 0 1 1 0 0 0 FALSE FALSE TRUE TRUE TRUE Prevotella oris (SP87) 0.383735126194065 4.54925132914331 -0.926069986791743 0.761037643122878 -0.864436424629748 1.4457037002295 0.975821628379208 0.98441950533562 1.10961772746304 1.04620765493728 0.26543137859656 4.66197017655715 -0.940726978460282 0.685855699929078 -0.826257025123348 0.790677166167104 3.13196584546209e-06 0 0 0 1 0.000211447553436732 0 0 0 FALSE TRUE TRUE TRUE TRUE Fusobacterium nucleatum_ss_animalis (SP9) -0.0842628532123669 2.44785150325157 7.21122170259273 5.91166980607861 5.90516363685419 0.238766681378142 1.21945578220384 0.385825002824232 1.97688014597675 0.824107797223797 -0.352908758986005 2.00733108897785 18.6903949972312 2.99040375214945 7.16552331715237 0.724156844087792 0 0 0 0 1 0 0 0 0 FALSE TRUE TRUE TRUE TRUE Megasphaera micronuciformis (SP90) -0.0740056336567828 1.29162724909389 1.58058451888716 0.485478118728053 -0.818108366537752 1.33954661831786 1.35213791990827 1.41926558283724 1.1156330898113 1.08907169604981 -0.0552467772638744 0.955248151890836 1.11366367084547 0.435159303862318 -0.75119789588245 0.95594186294755 0.339452220438223 0.265423500189993 0 0.452533566337965 1 1 1 0 1 FALSE FALSE FALSE TRUE FALSE Prevotella oulorum (SP91) -0.279424575850314 -2.34384562322667 -2.21003857801328 -3.11650457680463 -4.74197864455726 0.230839364228802 0.993033115061169 1.0067335930956 0.380838165059763 0.320283505526949 -1.21047195214658 -2.36028948851549 -2.1952566132393 -8.1832779976649 -14.8055662022166 0.226097846970106 0.0182606789925492 0.0281451952775893 0 0 1 1 1 0 0 FALSE FALSE FALSE TRUE TRUE Fusobacterium nucleatum_subsp._vincentii (SP93) -0.831583010271569 -2.24718520437019 2.13471583898815 -0.513099305789942 -2.13857337354257 1.37778352462031 0.780670362577915 0.840474176942376 0.930328829109084 0.867082514759439 -0.603565796376276 -2.87853274837997 2.53989461848096 -0.551524675722781 -2.46640122149838 0.546132358704377 0 0.0110885874171191 0 0 1 0 0.698581007278502 0 0 FALSE TRUE FALSE TRUE TRUE Prevotella buccae (SP94) -0.0285781583246439 1.4364255568465 -0.0315669560630468 1.77587845569735 2.74662989879498 1.48089120175436 1.4485290272172 1.46926556222711 1.72894699114174 1.26580325131711 -0.0192979459198545 0.99164430250048 -0.0214848539805137 1.02714453641209 2.16987110432607 0.984603422543011 0.321371069856433 0.98285888544807 0.304352410090292 0.0300166118974816 1 1 1 1 1 FALSE FALSE FALSE FALSE FALSE Streptococcus gordonii (SP95) 0.439247457861038 0.431525187166871 -0.169005003261579 -1.83798852060958 -0.57890324922008 0.217855195937661 0.229636637504255 0.440958531527896 1.338952506474 0.467889243535971 2.01623585781598 1.87916524060267 -0.383267339620319 -1.37270628474324 -1.23726556491264 0.0437753185136407 0.0602219341901894 0.701521552946909 0.169843674620989 0.215988507478569 1 1 1 1 1 FALSE FALSE FALSE FALSE FALSE Prevotella melaninogenica (SP96) -0.0842628532123677 4.10713332700932 4.1484863949797 1.6407234196613 0.662946588197638 0.238766681378143 0.382328206731791 0.421269711762444 0.401448144152707 0.58132851551193 -0.352908758986006 10.7424282454016 9.84757811717318 4.08701209249377 1.14039922437631 0.724156844087792 0 0 4.36964352055091e-05 0 1 0 0 0.00262178611233037 0 FALSE TRUE TRUE TRUE TRUE Streptococcus anginosus_nov_95.749% (SPN11) -0.549377585425638 -0.00200367212028743 -1.44595240276878 0.186982250646587 -2.38289626512478 1.21636533597864 1.29214209648046 1.14598360485112 1.29850497008727 0.962505818559351 -0.451655081886749 -0.0015506592701724 -1.26175662256235 0.143998101627613 -2.47572141297953 0.6515174821351 0.998762753405099 0.207036375226028 0.88550196869559 0 1 1 1 1 0 FALSE FALSE FALSE FALSE TRUE Streptococcus sp._str._2136FAA_nov_97.227% (SPN3) -1.40769349106307 1.35004975196359 -0.0725414154004909 0.317292781810589 0.00113729630584221 1.03800802775448 1.47573432178135 1.51564557589765 1.1966095926007 1.2636542666718 -1.35614894434712 0.914832522383803 -0.0478617274078262 0.265159818016324 0.000900005908133091 0 0.360279558494018 0.961826441518429 0 0.999281899278214 0 1 1 0 1 TRUE FALSE FALSE TRUE FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957_nov_97.639% (SPN37) -0.0842628532123671 3.43851559866854 1.89265284306774 1.6407234196613 0.0152493519086706 0.238766681378143 0.275096722669791 1.03847570421793 0.401448144152708 0.340509845635331 -0.352908758986005 12.4992968483886 1.8225297283128 4.08701209249376 0.0447838795386899 0.724156844087793 0 0 4.36964352055101e-05 0.964279574465099 1 0 0 0.00262178611233037 1 FALSE TRUE TRUE TRUE FALSE Atopobium_Lancefieldella parvula_parvulum (SPP2) -0.134271840760168 1.8128612167977 1.83981937508317 2.05209733671797 1.32770655660582 1.63824961206622 1.11569293825425 1.18272527976414 1.90214455935387 1.29281279615001 -0.0819605509265585 1.62487468965638 1.5555762665782 1.07883353377466 1.0269905747837 0.93467808367057 0.104189262243051 0.119808885964938 0.280661942957755 0.304424902232347 1 1 1 1 1 FALSE FALSE FALSE FALSE FALSE Fusobacterium nucleatum_nucleatum_ss_animalis_nucleatum_subsp._animalis (SPP6) -0.0842628532123675 -0.0933624789189533 3.99019510343989 1.6407234196613 2.35964031242329 0.238766681378147 0.272322735760519 0.458048419838408 0.40144814415271 0.800967057788492 -0.352908758986 -0.342837621171141 8.71129542341303 4.08701209249374 2.94598921326224 0.724156844087796 0.731720621668235 0 4.36964352055147e-05 0 1 1 0 0.00262178611233037 0 FALSE FALSE TRUE TRUE TRUE Fusobacterium nucleatum_nucleatum_ss_animalis (SPP7) -0.084262853212367 2.81307664624984 6.88259732761654 1.6407234196613 3.6662825027226 0.238766681378144 1.26791707879913 0.372537250624099 0.401448144152711 0.993358315599895 -0.352908758986002 2.21865979509808 18.47492382597 4.08701209249374 3.69079560229836 0.724156844087795 0 0 4.36964352055147e-05 0 1 0 0 0.00262178611233037 0 FALSE TRUE TRUE TRUE TRUE Prevotella sp._HMT_292_sp._HMT_300 (SPP8) 1.90537736878977 -0.148080563198456 0.338061519199125 -0.783409377862055 -2.40888344561468 0.908440233977617 1.32900827604979 1.41605402972912 1.04292603209504 0.979568587784338 2.09741631592763 -0.111421851817655 0.238734901424483 -0.751164851344569 -2.45912688060289 0.0359567380003071 0.91128183270531 0.811311151702005 0 0 1 1 1 0 0 FALSE FALSE FALSE TRUE TRUE Granulicatella adiacens_paradiacens (SPP9) 0.203567995556692 -1.27847849941543 3.5142237018417 5.58531932693864 2.82690257483827 1.57093692772562 0.934081422777665 0.972011352500183 1.08442878571012 1.138437574422 0.129583812032107 -1.36870134470037 3.61541425704803 5.15047129008214 2.48314236841095 0.896895711374026 0 0.000299867716089948 2.59832706048336e-07 0.0130229027951145 1 0 0.0215904755584763 1.63694604810452e-05 0.690213848141066 FALSE TRUE TRUE TRUE FALSE