taxon lfc_(Intercept) lfc_Age_HIV_Shedding_AgeADULT HIV-Neg NON-SHEDDER se_(Intercept) se_Age_HIV_Shedding_AgeADULT HIV-Neg NON-SHEDDER W_(Intercept) W_Age_HIV_Shedding_AgeADULT HIV-Neg NON-SHEDDER p_(Intercept) p_Age_HIV_Shedding_AgeADULT HIV-Neg NON-SHEDDER q_(Intercept) q_Age_HIV_Shedding_AgeADULT HIV-Neg NON-SHEDDER diff_(Intercept) diff_Age_HIV_Shedding_AgeADULT HIV-Neg NON-SHEDDER passed_ss_(Intercept) passed_ss_Age_HIV_Shedding_AgeADULT HIV-Neg NON-SHEDDER Lachnospiraceae_[G-3] -0.769425100424428 0.829745980368133 0.377998605290056 0.504615017824581 -2.03552364917858 1.64431487581405 0.0627109015832261 0.124063330633194 1 1 FALSE FALSE TRUE TRUE Butyrivibrio -0.899844082382038 0.886809147210348 0.304247828017619 0.568828623174214 -2.95760232125611 1.55900935902578 0.0119738797105844 0.14496524867692 0.993832015978503 1 FALSE FALSE FALSE FALSE Oribacterium 0.121525356075977 -0.515124038532771 0.298171155263579 0.533816529584014 0.407569122400689 -0.964983304159185 0.688676592681387 0.348080883612992 1 1 FALSE FALSE TRUE TRUE Fusobacterium -0.451009440886177 0.57269207569532 0.27443268972603 0.446910645097094 -1.64342462749764 1.28144648595448 0.118660465527974 0.217240702385192 1 1 FALSE FALSE TRUE TRUE Treponema -0.17334699279658 0.0451334243250854 0.391367154628531 0.834985078933458 -0.442926777953846 0.0540529710815134 0.663403202735943 0.957523106006269 1 1 FALSE FALSE TRUE TRUE Peptoniphilaceae_[G-1] NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-9] 0.490355536046997 -1.34229108206509 0.408543093930784 0.550938933970525 1.20025413066968 -2.43636998458507 0.249957197855689 0.0287884935262811 1 1 FALSE FALSE TRUE FALSE Romboutsia -0.412421994522185 -0.00633997172675742 NA 0.285047963470092 NA -0.0222417716989675 1 0.985842782564271 1 1 FALSE FALSE TRUE TRUE Eikenella 0.266532223584825 -0.790637086799583 0.349147500200802 0.458647841898124 0.763380013981302 -1.72384346894017 0.45570099138666 0.102872115613525 1 1 FALSE FALSE TRUE FALSE Granulicatella 0.0214591675013216 -0.324998280240926 0.329433291455825 0.492069390883947 0.0651396445286075 -0.66047245827891 0.948822701818629 0.517801049030272 1 1 FALSE FALSE TRUE TRUE Prevotella -0.429573596935449 0.531963972188938 0.398962811374587 0.526998322790452 -1.07672591201018 1.00942251461483 0.29664600846212 0.326924560401122 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-6] -0.605640064000428 0.199911976259498 0.282154196954957 0.503512111167792 -2.1464861077261 0.397035089773398 0.0846201894435487 0.70772255432828 1 1 FALSE FALSE TRUE TRUE Ruminococcaceae_[G-1] -0.140811031572153 -0.0166849020013257 0.555771756425379 0.718474123940741 -0.253361258365886 -0.0232226902060315 0.803027631903617 0.981743049204853 1 1 FALSE FALSE TRUE TRUE Centipeda -0.0789396642206728 -0.115481597676855 0.309938590749929 0.488074442356584 -0.254694531680195 -0.236606524855659 0.803271408089923 0.816952712085786 1 1 FALSE FALSE TRUE TRUE Capnocytophaga 0.38047191307801 -1.00712249683663 0.368837390538529 0.511426160636845 1.03154377196545 -1.96924321505676 0.316739128294093 0.0654456459808605 1 1 FALSE FALSE TRUE FALSE Bulleidia 0.740697780725271 -1.81522453276784 0.223842640059978 0.38833231485295 3.30901110050705 -4.67441019801614 0.00789248807485047 0.000874918271124634 0.667547762568826 0.0804924809434664 FALSE FALSE FALSE FALSE Shuttleworthia 0.246594652163728 -1.08682481194007 0.489778355453198 0.663633267572066 0.503482135170205 -1.63768886378507 0.624555032791089 0.129747127897853 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-2] -1.21413623258163 0.985130526224711 0.143280478405371 0.366375212992697 -8.47384267622686 2.68885691850651 1.39372755914751e-05 0.0248429894259801 0.00131010390559866 1 TRUE FALSE TRUE TRUE Cardiobacterium 0.624966386904532 -1.68495151668674 0.433731890382979 0.601333151091689 1.44090485565333 -2.80202665299227 0.170159996630612 0.0134047995519548 1 1 FALSE FALSE FALSE TRUE Filifactor -1.12566079234031 1.29604699714201 0.248158889567454 0.540917974682914 -4.53604863522057 2.39601392041327 0.000682504621731597 0.0337631443486903 0.0621079205775753 1 FALSE FALSE FALSE TRUE Veillonellaceae_[G-1] -0.615019001621802 0.333749808140189 0.357259064908694 0.483604885183182 -1.72149306212562 0.690129108215626 0.135943694687401 0.515905308730578 1 1 FALSE FALSE TRUE TRUE Campylobacter -0.1323870488378 -0.0326904691965953 0.289489350914124 0.374872355339242 -0.457312327447487 -0.0872042676153378 0.653236684380285 0.931528103171252 1 1 FALSE FALSE TRUE TRUE Erysipelotrichaceae_[G-1] -0.27789239282537 -0.178943261763104 0.266850833715818 0.467045311127357 -1.04137727042408 -0.383138974955491 0.328146330113329 0.71159689011384 1 1 FALSE FALSE TRUE TRUE Stomatobaculum -0.0238070685273652 -0.238992431786422 0.447639122210502 0.780764497979371 -0.0531836190049761 -0.306100536595782 0.958205588914452 0.763245030482751 1 1 FALSE FALSE TRUE TRUE Dialister -0.202027437225825 0.0443168689820879 0.261335678710328 0.600178522656877 -0.773057235134579 0.0738394782704078 0.450758945576064 0.942053378794498 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-8] -1.37382620191924 1.47167627841405 0.170749594491436 0.483305041790411 -8.04585337968776 3.04502571080618 8.78812237723046e-05 0.0187138956932057 0.00817295381082433 1 TRUE FALSE FALSE FALSE Lautropia 1.49707068320566 -3.16219102833076 0.4463396190054 0.656749633825733 3.35410664762778 -4.81491098808872 0.00403222125177976 0.000190450584388693 0.350803248904839 0.0179023549325372 FALSE TRUE TRUE TRUE Peptidiphaga 1.24508212680872 -3.04230570466624 0.620640060278466 0.726422167886871 2.00612594399737 -4.18806837009967 0.0661108326894038 0.00106294065954934 1 0.0967276000189897 FALSE FALSE FALSE TRUE Mitsuokella 0.491375251255934 -1.24106200824961 0.333314536344746 0.532721137889482 1.47420888583061 -2.32966541024899 0.178654395955912 0.0481868510396336 1 1 FALSE FALSE TRUE FALSE Cryptobacterium -0.340868229112313 0.225902979028493 0.320342431627375 0.498913702779906 -1.06407455103798 0.452789686412259 0.322617619321993 0.664400418817906 1 1 FALSE FALSE TRUE TRUE Johnsonella -0.454896753721034 -0.113055783798477 NA 0.352714794451834 NA -0.320530313944388 1 0.778957210003379 1 1 FALSE FALSE TRUE TRUE Bacteroidetes_[G-3] -1.01881292348977 0.968395867516861 0.176253093284376 0.324010406587385 -5.78039740752787 2.98878013739255 0.00117189340727093 0.0243585768120797 0.105470406654384 1 FALSE FALSE FALSE FALSE Lachnoanaerobaculum -0.26255196241505 0.214622866600181 0.340590811377916 0.499599929198752 -0.770872124684907 0.429589465603785 0.451364426367026 0.672889727052359 1 1 FALSE FALSE TRUE TRUE Corynebacterium 1.14046120235233 -2.45110214645785 0.516079914897791 0.661852556897705 2.20985388004918 -3.70339605235775 0.0411191783442059 0.00176477201359397 1 0.158829481223458 FALSE FALSE TRUE TRUE Scardovia 0.307690102806532 -1.20683784873752 0.448048204874103 0.588649009654263 0.686734372461084 -2.05018241591258 0.509555456726924 0.0705929170238003 1 1 FALSE FALSE TRUE FALSE Haemophilus -0.13321284043661 -0.0311214651588563 0.423689529798833 0.585029885017997 -0.314411452413893 -0.0531963681785229 0.757034405488311 0.958195579961511 1 1 FALSE FALSE TRUE TRUE Weeksellaceae_[G-1] -0.190522277470023 0.077766465204628 0.393488797958559 0.705464763529058 -0.484187296966173 0.110234372040929 0.634431721897325 0.913514405770191 1 1 FALSE FALSE TRUE TRUE Abiotrophia 0.460731218842733 -1.13779126321564 0.627687248302373 0.715431965141075 0.734013985609578 -1.59035564337873 0.474258326375441 0.132605581443568 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-1] -0.813874355366665 1.12113526947676 0.303566851272707 0.645829395253199 -2.68103830162776 1.73596197032378 0.0163960948596037 0.101783942164611 1 1 FALSE FALSE FALSE FALSE Lancefieldella -0.418715473560761 0.511333537777031 0.285625429330159 0.757855018291073 -1.46596006715061 0.674711554896165 0.160911874821447 0.508931796725615 1 1 FALSE FALSE TRUE TRUE Kingella 1.11776029772811 -2.40797042767182 0.371119495567886 0.533358490163825 3.01186089945965 -4.51473159625187 0.00785350308904501 0.000305960999846463 0.667547762568826 0.0284543729857211 FALSE TRUE TRUE TRUE Peptostreptococcaceae_[G-4] 0.940156695737262 -1.68229334254232 NA 0.395762480913816 NA -4.25076510198213 1 0.0131500441824147 1 1 FALSE FALSE TRUE FALSE Leptotrichia 0.240245011327085 -0.740691383509878 0.392969717329658 0.486114328967891 0.611357569635694 -1.52369790267755 0.549051590573497 0.145970118976676 1 1 FALSE FALSE TRUE TRUE Bacteroidetes_[G-5] 0.293226707746143 -0.783453140528743 0.259394997130336 0.581875653330563 1.13042545534835 -1.34642708634462 0.27872217111255 0.201172332027439 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-5] -0.680479131807836 0.475560849673279 0.27667562426922 0.558641568959075 -2.45948349662236 0.85128081420686 0.0491539078349891 0.427276074886011 1 1 FALSE FALSE FALSE TRUE Ruminococcaceae_[G-2] -0.470291507446491 0.527192195379287 0.49132342695463 0.632234775517433 -0.957193330595894 0.833855105404195 0.35271056649593 0.416638366873853 1 1 FALSE FALSE TRUE TRUE Desulfobulbus NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE FALSE Pseudoleptotrichia 0.494926813763611 -1.22458680813928 0.389425607128355 0.620787735608483 1.2709149185469 -1.97263370053367 0.220875347747002 0.0650274069516424 1 1 FALSE FALSE TRUE FALSE Parvimonas 0.0488285341908861 -0.431729931726835 0.527000904659853 0.683149340364192 0.0926536060168662 -0.631970063085586 0.927328985254232 0.536332787437568 1 1 FALSE FALSE TRUE TRUE Solobacterium -0.72516316995217 0.799414449601508 0.218602944212594 0.515240308387211 -3.31726167991105 1.55153709169962 0.00468992478722475 0.141612888860304 0.403333531701328 1 FALSE FALSE FALSE FALSE Ottowia 0.336494158639157 -1.28267606952494 0.318999904132859 0.418874164360606 1.05484093969825 -3.06219905322375 0.368941567482043 0.0548979726926691 1 1 FALSE FALSE TRUE TRUE Anaeroglobus -0.151524776622214 0.00734363354973785 0.31633783787821 0.703096364992685 -0.478996687966714 0.0104447041904622 0.641321295720533 0.991853506285039 1 1 FALSE FALSE TRUE TRUE Bacteroidales_[G-2] -0.100657724029393 -0.201528685228113 0.44825158098894 0.570363492624497 -0.224556316806113 -0.353333773697172 0.825815406785162 0.729502069844347 1 1 FALSE FALSE TRUE TRUE Limosilactobacillus 1.62046571641832 -2.50505933610824 NA 0.349446863920079 NA -7.16864162982206 1 0.00200476561177799 1 0.178424139448241 FALSE FALSE TRUE FALSE Alloprevotella -0.475126135393005 0.618513795258295 0.444934985177977 0.667717032958263 -1.06785519507519 0.926311243728534 0.300515984970788 0.3672487334769 1 1 FALSE FALSE TRUE TRUE Mycoplasma -0.314175850898537 0.395711370730248 0.307228745694069 0.491173119466289 -1.02261215886155 0.805645413088219 0.340525831746599 0.44694660334054 1 1 FALSE FALSE TRUE TRUE Rothia -0.0585600555203051 -0.172961756499837 0.37725761867214 0.535236895026147 -0.155225640575326 -0.323149913817858 0.878471599982072 0.750522688707321 1 1 FALSE FALSE TRUE TRUE Pseudoramibacter 1.07873598510945 -2.04591257927683 0.136466594663954 0.318342903506222 7.90476224431197 -6.4267573008325 0.0156295599306504 0.0233659606240666 1 1 FALSE FALSE FALSE FALSE Streptobacillus -1.13225621443725 0.462796865927064 0.136466594663954 0.386833424156883 -8.29694781514409 1.19637248755261 0.0763610599422186 0.443232267397671 1 1 FALSE FALSE TRUE TRUE Porphyromonas -0.617371750640443 0.888780464228426 0.443962414205976 0.590815510537126 -1.39059463343222 1.5043282520129 0.1822857332666 0.150848602385103 1 1 FALSE FALSE TRUE TRUE Cloacibacterium -0.800599965900262 2.12245085614756 0.577413204216645 0.813309575691913 -1.38652867661107 2.6096469531198 0.214907480494238 0.0401394180185152 1 1 FALSE FALSE TRUE FALSE Pseudostreptobacillus -0.315997828075875 0.625444193169203 0.349216018414565 0.651740664452433 -0.90487781605924 0.959651940230977 0.407016229568621 0.381303921195119 1 1 FALSE FALSE TRUE TRUE Phocaeicola NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Peptostreptococcus -1.17070033980394 1.61487996918107 0.332958707175199 0.50219067264647 -3.51605263528348 3.21567097347885 0.0034242204842872 0.00622351209937719 0.301331402617273 0.541445552645815 FALSE FALSE FALSE FALSE Megasphaera -0.205255528339929 0.105759641857448 0.538262923568865 0.858892001145488 -0.381329494104879 0.123134971237826 0.707682706718003 0.903444286709007 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-2] 0.516709540646076 -1.26597398921596 0.410415931796262 0.767997906417857 1.25898996753026 -1.64840812538252 0.225048048499886 0.117624982574189 1 1 FALSE FALSE TRUE TRUE Riemerella -0.447807079087196 0.566607588277256 0.453654208366333 0.659536815239222 -0.987111043673124 0.859099257517173 0.337430287426307 0.402237707280248 1 1 FALSE FALSE TRUE TRUE Absconditabacteria_(SR1)_[G-1] -1.4077593854255 2.06068292355322 0.365782718548764 0.82635001405432 -3.84862191141988 2.49371681310065 0.00157835838580256 0.0248115174447413 0.140473896336428 1 FALSE FALSE TRUE TRUE Streptococcus 0.0280697060662685 -0.337558303514326 0.586788623820833 0.657865767387212 0.0478361456353645 -0.513111215461137 0.962404325117511 0.61447693974037 1 1 FALSE FALSE TRUE TRUE Morococcus_Neisseria 0.340054555478295 -0.930329517397177 0.45545466233031 0.643279895536722 0.746626576920794 -1.44622818753096 0.465490184765077 0.166298787423049 1 1 FALSE FALSE TRUE TRUE Kingella_Neisseria -0.35046706359629 0.381661558844536 0.473091905671329 0.682242963222432 -0.740801225713149 0.559421759429862 0.468923648525417 0.583169897712509 1 1 FALSE FALSE TRUE TRUE Peptoanaerobacter_Peptostreptococcaceae_[G-7] 0.0118448845713092 -0.42250240777749 0.43739479041369 0.706587144611683 0.0270805341785308 -0.597948053540775 0.978752503649852 0.558795194464413 1 1 FALSE FALSE TRUE TRUE Mogibacterium -0.255242462367017 0.222587505475131 0.290345524495531 0.775120415106126 -0.879099007330992 0.287165066404109 0.392359252346833 0.777671677792708 1 1 FALSE FALSE TRUE TRUE Escherichia_Pseudescherichia_Shigella -0.167413475835815 0.0338597420996324 0.270604743171081 0.416438502399639 -0.618664232836354 0.081307904779512 0.544338952321325 0.936146685610757 1 1 FALSE FALSE TRUE TRUE Actinomyces 0.89853368243211 -2.15569199274367 0.486265083268693 0.762185848681415 1.84782686100374 -2.82830230510448 0.0831992622263362 0.0121124628441582 1 1 FALSE FALSE TRUE TRUE Parvimonas_Peptostreptococcus -1.194843752789 1.77168600522926 0.427622926063978 0.619033170303843 -2.7941526984693 2.86202111650924 0.0143444402809256 0.0125487618259243 1 1 FALSE FALSE FALSE FALSE Aggregatibacter -0.587784793303855 0.83256524528891 0.407994725946245 0.579267900970899 -1.44066762613323 1.43727150061908 0.16784327979131 0.168792343227113 1 1 FALSE FALSE TRUE TRUE Moraxella -1.73608514305572 2.00972969894578 NA 0.589558706470637 NA 3.40887120635861 1 0.0421856120906674 1 1 FALSE FALSE TRUE FALSE Fretibacterium 0.23294281579988 -0.810490894077342 0.204549807293721 0.461128384686277 1.13880730997409 -1.7576252536021 0.277007823460077 0.104267455455961 1 1 FALSE FALSE TRUE FALSE Catonella -0.284712818452554 0.237356646890149 0.396009799331892 0.569331745637812 -0.718953972686768 0.416903938185007 0.482538243152555 0.68228842679479 1 1 FALSE FALSE TRUE TRUE Schaalia -0.410899285325764 0.496482780130536 0.503368310984613 0.793308801918687 -0.81629946971041 0.625837982548219 0.425620065124231 0.539733450306507 1 1 FALSE FALSE TRUE TRUE Eikenella_Neisseria 0.324197174913961 -0.757208461212137 0.275906058388618 0.520488900006674 1.17502738724687 -1.45480232374298 0.270133525661745 0.179695727487428 1 1 FALSE FALSE TRUE TRUE Eikenella_Kingella 0.00120599255853209 -0.456186435150918 0.323834076359575 0.457981105381827 0.00372410640686556 -0.996081344383383 0.997109840842441 0.345235684418608 1 1 FALSE FALSE TRUE TRUE Tannerella 0.0547523810871372 -0.388255386053976 0.404445170084868 0.658350506344795 0.135376523536301 -0.589739633086326 0.893904222057706 0.563122127677793 1 1 FALSE FALSE TRUE TRUE Hallella_Prevotella -1.46490389732196 1.99632364998233 0.257931571961445 0.529240611017741 -5.67942840879106 3.7720530292325 0.000465299171680784 0.00544963728297793 0.0428075237946321 0.479568080902057 TRUE FALSE FALSE FALSE Selenomonas -0.0485886804895963 -0.191907369058183 0.334746027324981 0.470557035736073 -0.14515088014002 -0.407830198007751 0.886298812283864 0.688488534690571 1 1 FALSE FALSE TRUE TRUE Gemella 0.209783526141699 -0.682814561657644 0.374766648665638 0.502698092809221 0.559771065244562 -1.35829948715715 0.582936864004724 0.192122451064448 1 1 FALSE FALSE TRUE TRUE Bifidobacterium 0.0190411295657884 -0.906800640191099 0.3744097304532 0.458942452204309 0.0508563961271526 -1.97584824815338 0.962636669303796 0.142632369024048 1 1 FALSE FALSE TRUE TRUE Veillonella -0.168964009283038 0.0368057556493568 0.327006591674417 0.533558059223801 -0.516699092877206 0.0689817256305721 0.61202275812254 0.945809075184676 1 1 FALSE FALSE TRUE TRUE Kocuria NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Centipeda_Selenomonas 0.0943525241677179 -0.797016155724062 0.451801404109631 0.595313327350143 0.208836279191427 -1.33881792848774 0.838392937578677 0.207640997246924 1 1 FALSE FALSE TRUE TRUE Neisseria -0.454531967777141 0.579384876788152 0.402849866398201 0.641129776969283 -1.12829122134511 0.903693600891526 0.274869131192493 0.378785856436257 1 1 FALSE FALSE TRUE TRUE Mesocricetibacter_Pasteurella_Rodentibacter -0.533109953170857 0.829377191143593 0.215243119359425 0.367954861618386 -2.47678046460867 2.25401884213656 0.0327227395094044 0.0478520575150771 1 1 FALSE FALSE FALSE FALSE Peptococcus 0.166552977432521 -0.923275525083477 0.274208725784822 0.431172636906711 0.607394884884949 -2.14131288967495 0.557128821368587 0.0579066572425691 1 1 FALSE FALSE TRUE TRUE