Taxon	HAKU.02057.01	HAKU.02057.04	HAKU.04092.05	HAKU.06449.04	HAKU.06601.03	HAKU.06641.01	HAKU.06912.03	HAKU.07031.01	HAKU.13051.01	HAKU.13110.01	HAKU.14131.03	HAKU.14257.05	HAKU.15133.03	HAKU.16255.02	HAKU.17164.01	HAKU.17164.06	HAKU.17282.03	HAKU.19122.01	HAKU.21294.01	HAKU.23313.04	HAKU.25705.02
Capnocytophaga sp._HMT_901 (SP1)	8	0	0	0	0	0	0	493	0	0	0	0	0	0	0	0	0	30	0	0	1
Prevotella micans (SP101)	0	47	13	0	1	0	4	186	1	0	0	0	10	54	0	0	14	12	3	18	0
Schaalia lingnae (SP114)	5	2	39	0	0	298	6	25	116	162	1	0	12	29	53	95	10	12	62	0	8
Treponema sp._HMT_257 (SP12)	0	0	146	0	25	1	0	0	0	0	0	12	26	44	3	0	0	119	0	6	0
Lachnospiraceae_[G-3] bacterium_HMT_100 (SP122)	53	54	2	6	1	23	0	566	1	5	2	0	18	54	0	34	0	43	88	0	0
Oribacterium sp._HMT_078 (SP123)	208	6	11	5	5	1	5	105	20	5	1	12	13	15	10	217	6	55	128	14	9
Prevotella pleuritidis (SP125)	52	1	93	31	0	0	348	2	40	1	8	0	82	317	2	0	4	94	1	11	2
Butyrivibrio sp._HMT_455 (SP126)	14	0	14	0	0	33	0	32	165	11	5	0	0	4	0	104	0	51	8	1	0
Oribacterium sinus (SP127)	108	50	400	38	20	70	194	35	33	149	61	0	45	132	287	3069	35	71	887	23	1
Lancefieldella sp._HMT_199 (SP129)	21	0	0	5	0	14	9	78	12	8	0	20	16	7	47	480	0	251	148	17	75
Selenomonas dianae (SP130)	0	6	2	0	0	0	2	494	2	0	0	0	0	24	0	0	0	3	27	0	1
Leptotrichia buccalis (SP132)	3	96	0	0	12	5	0	501	3	4	33	8	24	52	6	5	2	111	12	37	24
Cardiobacterium valvarum (SP137)	0	8	16	58	2	4	13	36	0	0	1	0	17	16	5	1	13	12	101	4	4
Fusobacterium periodonticum (SP138)	398	336	1545	181	52	1709	664	3257	568	756	387	0	643	947	774	217	311	736	175	27	29
Treponema denticola (SP148)	25	0	10	6	0	3	40	27	146	0	0	5	12	18	53	0	0	280	60	3	153
Peptoniphilaceae_[G-1] bacterium_HMT_113 (SP151)	0	0	0	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	83	0	10
Peptidiphaga sp._HMT_183 (SP152)	1	8	27	2	130	1	18	5	55	0	1	20	15	0	4	16	0	73	36	7	22
Peptostreptococcaceae_[G-9] [Eubacterium]_brachy (SP157)	42	10	25	56	2	8	61	216	140	2	1	0	36	21	20	287	0	307	168	54	147
Romboutsia timonensis (SP158)	11	0	1	0	0	21	6	17	10	24	0	0	0	10	6	9	0	9	4	0	3
Prevotella veroralis (SP159)	180	50	13	68	68	4	62	49	115	2	17	63	36	356	130	39	21	115	20	105	5
Eikenella halliae (SP161)	4	5	7	23	85	43	16	168	0	2	4	8	83	49	22	8	22	101	113	35	7
Leptotrichia sp._HMT_217 (SP162)	0	0	0	0	0	3	3	132	0	0	2	0	0	0	0	0	0	0	0	0	0
Leptotrichia sp._HMT_212 (SP163)	104	44	2	26	4	37	18	241	0	5	24	0	39	70	20	3	59	67	140	9	3
Treponema socranskii (SP171)	31	27	11	10	9	4	11	142	42	8	3	15	6	103	29	54	14	120	33	2	51
Tannerella forsythia (SP172)	0	0	9	9	0	10	9	0	55	0	0	1	13	7	61	9	1	129	42	0	249
Prevotella oris (SP176)	572	57	80	58	92	19	54	149	242	63	36	18	37	668	107	256	32	254	118	103	142
Bacteroidetes_[G-5] bacterium_HMT_505 (SP177)	0	0	30	12	0	0	7	0	0	0	0	13	15	18	0	0	1	0	0	0	0
Granulicatella elegans (SP185)	3563	149	526	1608	172	16	113	2338	3429	0	2297	344	813	318	374	355	102	1452	12	2299	1961
Tannerella serpentiformis (SP188)	33	9	0	0	13	5	0	54	0	0	5	0	14	50	0	2	3	1	3	3	1
Leptotrichia sp._HMT_392 (SP193)	113	42	2	5	23	14	0	1324	5	15	6	0	28	69	4	62	1	44	53	9	8
Prevotella melaninogenica (SP194)	224	171	2047	81	34	1650	95	21	668	1536	431	5	140	4798	523	198	981	590	109	121	64
Prevotella histicola (SP195)	42	249	2989	26	30	340	21	64	1344	2242	686	9	24	2003	686	432	1259	119	18	115	75
Peptostreptococcaceae_[G-6] [Eubacterium]_nodatum (SP201)	0	0	1	0	0	0	0	0	0	0	0	0	11	0	0	0	0	31	0	0	108
Ruminococcaceae_[G-1] bacterium_HMT_075 (SP202)	68	134	1	38	56	14	6	493	12	11	25	5	7	21	15	29	4	39	131	17	14
Centipeda periodontii (SP203)	32	14	0	0	1	2	0	148	1	0	3	7	8	6	0	21	1	13	16	6	20
Aggregatibacter actinomycetemcomitans (SP204)	0	9	245	747	0	0	89	0	0	0	0	45	85	98	0	0	0	0	0	0	27
Treponema sp._HMT_246 (SP205)	35	0	39	0	0	0	0	0	0	0	0	0	27	3	0	0	0	0	0	11	0
Prevotella denticola (SP208)	498	40	3	0	11	2	12	36	64	46	14	44	0	185	49	205	0	186	39	21	185
Alloprevotella tannerae (SP209)	0	20	43	97	13	33	232	107	207	0	59	80	23	302	27	304	0	392	82	37	122
Eikenella corrodens (SP210)	8	19	7	20	3	6	4	159	5	5	5	4	30	58	2	9	6	15	111	10	8
Capnocytophaga sputigena (SP216)	14	35	26	35	127	35	21	10	0	6	26	5	35	18	10	16	108	35	10	11	31
Weeksellaceae_[G-1] sp._HMT_907 (SP217)	0	6	4	10	1	1	0	82	0	8	0	1	7	13	0	3	9	9	0	4	4
Streptococcus sanguinis (SP22)	1808	1606	92	3156	1028	342	587	67	7	320	47	180	1394	46	569	80	6	167	1018	780	214
Treponema sp._HMT_256 (SP235)	0	0	1	3	0	0	0	0	0	0	0	2	0	0	13	0	0	0	0	0	0
Prevotella fusca (SP236)	26	5	2	0	8	0	0	0	0	0	0	5	9	17	0	9	0	10	0	0	0
Alloprevotella sp._HMT_912 (SP238)	8	35	4	6	78	0	0	20	0	0	0	0	4	49	1	0	0	0	0	0	1
Prevotella shahii (SP239)	13	14	0	8	0	128	3	0	0	0	0	0	4	2	0	0	0	49	0	0	1
Prevotella sp._HMT_309 (SP240)	2	6	88	10	0	2	1	0	94	0	36	0	0	39	20	0	39	12	0	1	0
Treponema amylovorum (SP26)	0	0	2	0	0	0	15	0	0	0	3	22	0	0	0	0	0	0	0	73	365
Veillonella dispar (SP268)	331	861	111	156	155	192	286	1376	28	144	95	121	63	960	230	61	112	544	291	198	710
Streptococcus mutans (SP270)	15	9	3	0	11	32	4	78	19	16	2	158	5	6	12	106	0	10	319	28	292
Streptococcus anginosus (SP272)	193	0	9	0	0	78	4	279	71	38	0	7	42	19	123	13	0	269	263	192	257
Prevotella sp._HMT_942 (SP273)	926	14	37	48	1	0	0	14	6	0	206	0	1	0	0	0	4	12	0	24	1
Prevotella sp._HMT_317 (SP274)	42	88	6	14	55	1	15	13	3	1	35	1	10	13	15	10	16	45	6	21	31
Bulleidia extructa (SP276)	0	0	6	26	0	0	3	0	193	0	4	0	9	0	6	112	0	54	0	18	67
Leptotrichia sp._HMT_215 (SP29)	428	173	208	5	13	979	62	711	259	120	76	0	142	186	151	305	27	272	411	10	80
Absconditabacteria_(SR1)_[G-1] bacterium_HMT_874 (SP3)	0	7	0	32	1	1	0	226	0	0	0	0	6	15	0	2	10	7	0	2	0
Haemophilus parahaemolyticus (SP30)	114	0	0	20	0	0	0	904	187	14	0	0	23	0	8	0	481	2	0	1	0
Campylobacter gracilis (SP300)	260	94	25	35	98	12	74	247	172	25	12	12	16	120	11	105	43	152	471	59	78
Prevotella salivae (SP301)	119	204	309	0	57	282	4	142	1110	268	185	49	19	1102	141	295	370	117	129	195	338
Shuttleworthia satelles (SP303)	63	1	11	33	1	1	4	8	73	5	0	28	9	19	49	128	0	54	44	18	28
Prevotella sp._HMT_443 (SP304)	0	1	0	0	0	2	0	20	25	0	0	0	17	1	9	1	0	25	0	0	291
Leptotrichia hofstadii (SP309)	359	68	12	25	30	16	0	31	47	58	24	12	29	30	72	55	1	61	119	68	42
Peptostreptococcaceae_[G-2] bacterium_HMT_091 (SP31)	12	0	2	0	0	12	6	23	16	0	0	0	2	2	1	40	0	16	3	0	28
Treponema sp._HMT_231 (SP312)	0	15	4	0	10	0	2	0	25	0	0	2	7	44	0	0	1	22	14	0	6
Cardiobacterium hominis (SP315)	0	7	8	23	59	12	3	33	0	11	1	2	31	39	6	5	23	61	56	11	2
Filifactor alocis (SP325)	3	0	23	17	0	1	37	0	222	0	0	4	19	55	70	0	0	737	232	3	700
Schaalia sp._HMT_172 (SP326)	128	53	400	15	0	885	246	37	495	944	14	0	47	54	166	271	21	626	1875	14	50
Selenomonas noxia (SP329)	6	5	9	10	27	5	2	68	9	9	17	27	8	37	0	134	5	51	584	9	19
Fusobacterium sp._HMT_248 (SP330)	848	11	34	0	0	0	0	308	18	0	3	0	0	0	0	0	2	27	0	25	0
Prevotella koreensis (SP331)	0	0	4	0	0	0	0	0	14	0	0	0	3	0	4	0	0	152	0	0	71
Clostridioides difficile (SP335)	16	0	0	0	0	16	5	13	10	24	0	0	0	15	5	8	0	10	7	0	1
Prevotella sp._HMT_472 (SP337)	0	16	0	3	55	3	5	29	0	9	1	1	0	6	0	0	5	16	0	0	14
Veillonellaceae_[G-1] bacterium_HMT_155 (SP34)	50	28	1	0	1	1	1	66	2	1	0	0	0	5	1	77	0	40	49	1	2
Campylobacter concisus (SP340)	70	128	145	8	31	83	138	48	275	160	76	5	15	165	108	340	201	216	178	32	57
Erysipelotrichaceae_[G-1] bacterium_HMT_905 (SP342)	0	0	1	8	0	0	4	21	2	0	0	2	0	1	1	74	0	16	2	3	0
Leptotrichia sp._HMT_909 (SP350)	3	6	0	21	0	0	0	2	2	0	0	0	1	1	0	3	0	105	17	3	0
Stomatobaculum longum (SP352)	455	60	410	7	42	148	3	85	483	128	55	7	21	185	103	671	23	46	334	86	37
Dialister invisus (SP354)	109	171	16	83	9	8	242	308	60	15	29	9	30	20	51	518	0	158	129	23	77
Lachnospiraceae_[G-8] bacterium_HMT_500 (SP357)	0	0	5	0	1	1	6	2	21	0	0	0	5	1	12	0	0	199	0	0	43
Streptococcus hongkongensis (SP397)	6	16	18	0	2	67	0	5	17	108	1	8	13	14	165	32	5	24	10	6	13
Lautropia mirabilis (SP399)	2956	500	1309	331	2090	261	5088	33	2	175	67	391	413	44	605	6	698	164	145	148	67
Mogibacterium timidum (SP401)	0	0	1	7	0	0	1	0	33	0	0	2	9	2	1	0	0	117	21	2	56
Veillonella sp._HMT_780 (SP402)	2426	115	253	576	0	0	4	257	80	0	242	54	64	70	8	22	9	496	39	1333	250
Bacteroidetes_[G-5] bacterium_HMT_507 (SP403)	0	0	8	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
Peptidiphaga gingivicola (SP409)	15	8	42	26	55	25	27	0	30	8	0	289	16	0	25	88	0	101	49	82	127
Alloprevotella sp._HMT_308 (SP411)	7	14	177	8	13	14	77	7	18	139	39	0	3	222	5	12	188	13	2	4	13
Mitsuokella sp._HMT_521 (SP415)	15	82	47	0	12	0	0	0	4	0	12	13	0	0	9	0	0	10	3	3	9
Butyrivibrio sp._HMT_080 (SP417)	0	0	0	12	0	0	7	6	10	0	0	0	4	0	23	0	0	18	30	0	63
Cryptobacterium curtum (SP423)	59	3	0	2	0	1	0	0	14	3	0	6	1	15	14	26	0	13	19	5	13
Johnsonella sp._HMT_166 (SP424)	0	0	3	0	0	0	8	0	19	0	0	0	0	0	9	0	0	100	0	0	14
Prevotella saccharolytica (SP429)	4	47	1	0	14	0	4	20	0	0	2	1	4	16	1	6	7	10	6	5	3
Bacteroidetes_[G-3] bacterium_HMT_280 (SP430)	0	0	3	7	0	0	0	0	19	0	0	0	3	5	1	16	0	65	4	0	0
Leptotrichia trevisanii (SP464)	322	10	10	78	7	2	11	37	0	2	8	7	10	0	0	5	45	1	56	3	14
Lachnoanaerobaculum orale (SP468)	151	110	256	18	32	396	23	30	779	359	32	1	32	53	261	466	39	110	232	87	74
Corynebacterium matruchotii (SP469)	148	1198	61	39	115	39	34	50	13	158	4	128	243	18	38	43	1	229	24	284	298
Scardovia wiggsiae (SP482)	11	26	2	11	4	13	2	0	5	40	0	62	0	0	8	9	6	5	5	17	8
Leptotrichia shahii (SP483)	253	1156	59	68	112	2	0	1391	4	15	20	50	26	165	26	91	49	325	228	244	105
Haemophilus parainfluenzae (SP484)	525	1238	4245	839	1403	7128	1994	2542	2036	7164	1510	5	2691	1775	2250	640	5903	1304	1933	512	785
Weeksellaceae_[G-1] sp._HMT_931 (SP486)	31	1	4	11	0	0	14	1	10	0	25	0	0	9	0	11	4	8	0	12	4
Abiotrophia defectiva (SP487)	63	357	9	212	227	361	20	60	0	226	9	0	478	34	237	0	2	42	26	95	122
Kingella sp._HMT_012 (SP488)	0	2	31	0	29	7	0	1	0	0	3	12	84	2	3	0	83	6	0	52	0
Peptostreptococcaceae_[G-1] [Eubacterium]_sulci (SP489)	11	3	16	1	0	274	6	65	341	121	1	0	9	41	104	67	7	42	78	0	0
Treponema lecithinolyticum (SP490)	0	0	2	19	0	0	51	1	144	0	0	4	3	22	33	0	0	123	0	22	85
Capnocytophaga granulosa (SP491)	3	33	10	23	37	35	1	249	2	12	8	3	31	46	17	20	63	144	60	12	23
Fusobacterium nucleatum (SP51)	301	360	88	14	43	54	38	638	93	63	69	7	163	300	61	55	59	243	221	31	251
Lancefieldella parvula (SP515)	134	33	102	27	4	1143	28	170	825	919	30	4	18	305	271	474	46	96	281	64	70
Leptotrichia sp._HMT_218 (SP517)	407	4857	298	120	19	220	0	8	547	51	172	95	3	40	125	0	21	68	96	282	85
Streptococcus intermedius (SP518)	141	12	18	11	21	39	28	92	35	0	10	15	50	4	8	61	0	31	2	51	124
Prevotella sp._HMT_300 (SP52)	10	20	15	0	0	1	28	0	2	6	16	18	2	43	1	9	0	29	0	0	0
Oribacterium parvum (SP521)	1	1	4	4	0	235	0	12	44	17	23	0	6	37	0	1	2	37	22	0	0
Prevotella nigrescens (SP527)	233	75	488	11	111	1	242	7	40	3	60	63	5	235	5	86	51	108	19	19	48
Prevotella pallens (SP530)	178	67	223	19	35	189	1	183	1309	51	70	0	8	222	149	115	152	233	47	117	185
Rothia aeria (SP532)	147	18	27	42	525	71	328	53	2	409	3	20	50	3	195	0	63	217	148	432	125
Leptotrichia sp._HMT_847 (SP538)	59	9	28	48	11	4	11	0	6	5	8	71	9	0	7	22	2	29	4	46	0
Corynebacterium durum (SP55)	144	17	43	7	127	225	13	14	0	128	5	8	9	9	9	4	12	22	122	71	40
Leptotrichia wadei (SP550)	260	669	13	12	96	4	4	54	57	137	32	172	41	154	21	612	10	120	47	146	151
Prevotella intermedia (SP551)	0	0	28	22	0	0	269	0	1	0	0	20	2	665	17	0	0	453	0	3	64
Porphyromonas gingivalis (SP553)	0	0	0	0	0	0	0	2	397	0	0	0	8	0	64	0	0	992	112	3	705
Kingella oralis (SP564)	3	59	75	32	34	7	28	4	2	32	12	262	6	6	8	38	56	40	157	22	42
Prevotella oulorum (SP567)	76	169	24	19	64	24	18	59	24	9	23	38	20	100	17	92	135	48	47	46	101
Neisseria sp._HMT_018 (SP568)	0	0	0	0	0	17	4	0	0	31	0	0	11	0	0	3	0	0	0	0	0
Pseudoleptotrichia goodfellowii (SP569)	309	4	3	23	46	5	30	17	0	3	1	0	0	50	4	19	92	2	163	6	21
Fusobacterium nucleatum_subsp._vincentii (SP585)	21	12	179	450	0	33	222	148	291	9	73	25	168	1360	75	264	2	2074	343	171	1837
Prevotella aurantiaca (SP588)	0	3	91	0	0	135	16	0	1	12	73	0	6	247	130	55	316	0	0	0	0
Peptostreptococcaceae_[G-4] bacterium_HMT_369 (SP589)	0	0	0	0	0	0	0	18	6	0	0	0	13	0	0	0	0	97	5	0	35
Prevotella jejuni (SP60)	68	643	987	38	4	91	28	171	746	1527	1106	3	59	2355	43	395	341	434	7	174	108
Leptotrichia sp._HMT_225 (SP609)	102	254	1	66	0	1	6	102	0	1	13	0	8	25	15	2	0	124	149	15	5
Leptotrichia sp._HMT_417 (SP61)	1072	4124	185	102	46	259	18	517	493	51	529	225	64	127	569	781	49	665	225	1646	516
Stomatobaculum sp._HMT_097 (SP610)	82	14	0	2	1	292	20	84	0	257	105	0	33	49	135	633	0	55	303	6	0
Prevotella baroniae (SP614)	0	0	27	0	0	1	9	20	85	0	0	3	4	30	0	60	0	39	1	0	28
Fannyhessea sp._HMT_416 (SP615)	0	0	0	0	0	0	0	1	20	0	0	0	0	1	0	0	0	0	0	0	8
Neisseria oralis (SP62)	946	290	117	1635	141	87	1088	1	0	1	155	140	632	128	1	0	433	586	1722	155	118
Bacteroidetes_[G-5] bacterium_HMT_511 (SP629)	0	0	53	0	0	2	26	52	0	0	0	4	0	20	0	0	16	118	22	0	28
Peptostreptococcaceae_[G-5] [Eubacterium]_saphenum (SP63)	0	0	6	0	0	0	5	0	144	0	0	0	40	0	34	0	0	768	0	4	372
Fretibacterium sp._HMT_360 (SP637)	0	0	2	5	0	1	5	0	31	2	0	0	0	13	9	0	0	47	2	3	5
Ruminococcaceae_[G-2] bacterium_HMT_085 (SP643)	52	10	355	12	1	89	13	35	731	105	17	9	7	56	24	71	0	40	15	29	11
Desulfobulbus sp._HMT_041 (SP645)	0	0	0	0	0	0	16	0	11	0	0	0	0	1	4	0	0	85	2	0	1
Fretibacterium fastidiosum (SP649)	0	0	2	9	0	0	6	43	71	0	0	0	1	14	3	8	0	144	24	5	44
Pseudoleptotrichia sp._HMT_221 (SP650)	262	473	488	286	5	967	82	44	6295	98	646	78	23	33	447	171	105	585	78	134	115
Pseudoleptotrichia sp._HMT_219 (SP651)	0	0	0	3	0	2	14	18	0	0	4	0	12	0	7	0	29	5	95	2	2
Capnocytophaga leadbetteri (SP652)	36	55	5	79	54	36	3	278	14	5	3	1	16	202	14	6	73	94	34	13	26
Prevotella multiformis (SP660)	0	0	186	0	0	0	0	0	137	0	0	0	5	170	44	293	0	347	24	0	50
Prevotella nanceiensis (SP661)	35	17	139	27	26	177	33	127	39	374	60	0	15	15	19	7	47	37	5	17	2
Rothia dentocariosa (SP662)	649	41	463	62	1153	190	70	60	268	1078	22	271	413	43	426	514	16	52	143	1509	1255
Parvimonas micra (SP663)	38	1	37	36	0	15	80	979	374	2	20	6	28	31	12	658	1	611	72	50	719
Absconditabacteria_(SR1)_[G-1] bacterium_HMT_875 (SP664)	4	0	0	8	0	13	0	0	1	0	1	0	0	8	0	0	0	1	0	0	0
Solobacterium moorei (SP674)	15	23	63	19	0	887	20	475	199	92	13	0	11	75	98	183	12	82	218	25	17
Prevotella multisaccharivorax (SP676)	204	0	0	0	0	8	0	115	69	0	0	2	0	118	0	0	0	0	34	0	385
Ottowia sp._HMT_894 (SP682)	0	0	0	27	0	1	28	85	0	0	0	0	1	3	0	2	0	19	4	0	0
Prevotella maculosa (SP683)	34	178	16	6	27	1	19	64	5	2	8	5	15	19	7	27	2	16	9	27	21
Campylobacter sp._HMT_044 (SP684)	20	5	2	18	0	10	23	44	0	0	5	7	4	0	9	51	0	144	35	0	6
Treponema sp._HMT_238 (SP687)	0	0	57	0	0	0	0	0	0	0	0	0	16	37	0	0	0	0	0	14	0
Peptostreptococcaceae_[G-1] [Eubacterium]_infirmum (SP688)	10	25	2	23	0	2	4	145	14	0	0	2	12	1	2	439	0	75	10	10	4
Anaeroglobus geminatus (SP691)	116	13	0	0	9	0	0	52	6	2	1	15	0	16	15	103	0	41	14	0	19
Lachnospiraceae_[G-2] bacterium_HMT_088 (SP694)	0	0	0	11	0	0	0	104	0	0	0	0	1	0	0	0	0	1	0	0	0
Bacteroidales_[G-2] bacterium_HMT_274 (SP696)	583	292	52	64	9	5	198	259	33	3	0	4	3	93	50	28	45	78	43	18	22
Actinomyces graevenitzii (SP701)	6	9	142	5	0	915	4	9	1022	414	0	0	26	35	137	80	43	22	53	21	57
Oribacterium asaccharolyticum (SP702)	93	17	70	10	0	48	65	61	91	87	25	15	6	50	64	574	4	62	251	39	18
Limosilactobacillus mucosae (SP709)	186	0	0	0	7	2	0	70	35	0	0	0	0	13	0	0	0	0	79	0	318
Selenomonas flueggei (SP718)	9	22	0	0	5	0	0	16	4	0	6	1	0	9	3	54	0	7	77	0	3
Treponema sp._HMT_262 (SP72)	0	1	3	9	0	0	0	0	0	0	0	0	9	0	9	0	0	0	0	61	0
Alloprevotella sp._HMT_473 (SP725)	4148	34	934	291	0	2	35	327	165	0	977	47	8	207	0	13	6	292	0	1088	31
Mycoplasma faucium (SP728)	0	0	44	7	0	0	6	21	52	0	0	12	4	9	0	0	0	104	0	6	200
Rothia mucilaginosa (SP73)	898	603	1255	1165	539	7031	660	721	1310	5017	43	79	1336	2089	4105	2283	343	3274	2901	328	1855
Pseudoramibacter alactolyticus (SP731)	66	0	0	0	0	0	0	3	9	0	0	5	0	1	22	13	0	4	42	0	7
Leptotrichia hongkongensis (SP739)	154	51	106	10	303	93	10	18	285	38	91	144	95	30	106	138	46	63	71	277	70
Dialister pneumosintes (SP757)	17	0	25	24	0	3	16	179	187	0	0	3	7	30	12	0	0	145	87	12	40
Streptobacillus felis (SP758)	0	0	0	40	0	0	0	0	463	0	0	0	0	0	0	0	0	1075	0	0	0
Lachnoanaerobaculum saburreum (SP76)	163	50	5	0	15	4	0	106	17	15	4	5	62	58	8	98	0	57	164	23	11
Lancefieldella rimae (SP771)	201	12	5	22	4	9	4	0	65	16	13	17	5	61	17	6	0	26	25	45	35
Oribacterium sp._HMT_102 (SP773)	0	0	0	0	0	0	0	5	18	0	0	0	0	2	1	40	0	0	12	0	4
Granulicatella adiacens (SP776)	290	352	1065	221	163	4084	346	891	1151	3144	52	19	672	851	1267	911	164	1076	2836	282	629
Prevotella sp._HMT_304 (SP779)	0	0	0	0	0	0	0	0	105	0	0	5	0	1	24	0	0	251	0	0	366
Treponema sp._HMT_951 (SP780)	0	0	7	3	0	0	0	0	0	0	0	3	0	16	0	0	0	47	0	4	0
Capnocytophaga sp._HMT_332 (SP787)	3	1	1	8	12	3	0	31	0	0	3	2	3	29	0	4	7	26	18	2	8
Porphyromonas sp._HMT_930 (SP8)	1	39	57	698	3	0	0	36	69	0	1261	8	168	19	1	0	246	52	0	279	3
Veillonella sp._HMT_917 (SP803)	0	0	134	0	0	45	0	8	882	0	4	5	1	0	60	167	264	17	0	12	0
Cloacibacterium sp._HMT_206 (SP809)	539	0	311	181	1	0	0	0	0	0	5	0	0	0	0	5	1	0	0	0	0
Pseudostreptobacillus hongkongensis (SP819)	0	1	0	25	0	0	0	0	115	0	0	4	0	2	0	0	4	0	0	0	0
Phocaeicola abscessus (SP820)	14	0	0	0	0	0	0	9	19	0	0	0	0	5	1	0	0	27	3	0	2
Peptostreptococcus stomatis (SP833)	30	35	3	19	0	822	6	438	752	26	0	2	41	37	186	259	11	723	74	10	149
Alloprevotella sp._HMT_914 (SP836)	125	4	5	24	0	8	0	33	0	13	3	17	6	93	0	0	2	28	0	1	0
Catonella morbi (SP84)	17	17	32	4	0	28	50	8	49	15	7	0	3	15	47	96	27	70	83	0	39
Megasphaera micronuciformis (SP851)	17	86	601	4	6	212	16	219	693	476	78	12	24	138	212	172	109	29	69	25	70
Lachnospiraceae_[G-2] bacterium_HMT_096 (SP852)	664	438	442	42	37	1108	0	62	193	13	49	74	11	22	351	437	32	165	169	190	25
Capnocytophaga gingivalis (SP860)	2	17	17	33	29	47	4	85	17	11	1	7	20	31	5	7	49	103	13	3	7
Alloprevotella rava (SP870)	30	1	167	39	11	264	124	5	211	25	103	0	11	182	82	68	1	131	15	17	132
Riemerella sp._HMT_322 (SP876)	13	11	11	10	12	33	37	97	10	49	31	2	12	98	17	9	145	76	8	9	14
Absconditabacteria_(SR1)_[G-1] bacterium_HMT_345 (SP89)	1	9	0	6	1	0	0	1008	0	0	0	0	0	8	6	15	0	35	2	0	0
Leptotrichia sp._HMT_498 (SP91)	754	3084	41	19	70	5	0	486	54	26	68	51	35	67	40	193	3	310	90	228	213
Prevotella sp._HMT_396 (SP96)	1	5	0	0	0	25	1	9	3	4	15	0	2	24	4	4	38	12	0	0	0
Prevotella sp._HMT_305 (SP99)	0	0	95	0	0	11	0	0	43	10	17	0	0	65	8	16	26	4	0	0	0
Streptococcus cristatus_downii_gordonii_gwangjuense_infantis_inf ...(18 species) (SPP10)	15290	3428	7956	10046	7636	8487	6207	13666	11021	13211	13171	2346	7677	6975	6321	6890	44	13183	6933	13160	20410
Fusobacterium naviforme_nucleatum_nucleatum_subsp._vincentii (SPP100)	3590	163	163	197	228	2	265	287	496	0	20	41	61	148	193	409	4	246	3	116	254
Fusobacterium canifelinum_naviforme_nucleatum_nucleatum_subsp._p ...(6 species) (SPP101)	134	124	71	0	13	4	3	278	21	1	6	1	39	127	16	172	19	47	10	6	51
Fusobacterium nucleatum_nucleatum_subsp._nucleatum_sp._HMT_203 (SPP102)	116	91	2	0	19	42	328	163	4	10	5	2	23	153	22	20	1	259	48	87	230
Fusobacterium canifelinum_nucleatum_nucleatum_subsp._polymorphum ...(4 species) (SPP103)	303	566	76	47	156	69	148	1209	13	52	75	5	197	2561	48	293	46	212	799	74	564
Treponema medium_sp._HMT_237 (SPP105)	3	5	21	3	0	1	0	0	14	0	0	4	16	25	0	77	2	233	0	0	12
Fusobacterium nucleatum_subsp._animalis_simiae (SPP106)	222	108	4	7	9	24	14	490	46	7	19	2	31	42	12	211	0	48	33	28	5
Morococcus_Neisseria cerebrosus_flava_macacae_mucosa_sicca (SPP107)	2869	3056	252	1406	588	3158	181	1926	10	562	1445	62	3425	5073	408	334	4313	1278	895	1323	1223
Kingella_Neisseria denitrificans_elongata (SPP110)	7	101	42	61	10	235	25	456	1	178	8	1	228	190	386	12	80	147	247	15	16
Peptoanaerobacter_Peptostreptococcaceae_[G-7] [Eubacterium] yurii_[Eubacterium]_yurii_subsp._schtitka_[Eubacterium]_yurii_subsps._yurii_&_margaretiae (SPP112)	1	3	3	25	1	0	13	116	2	0	0	0	8	1	0	18	65	8	52	3	2
Prevotella scopos_sp._HMT_314 (SPP114)	14	59	78	20	1	5	44	29	7	5	32	14	63	398	0	6	1	352	1	18	22
Prevotella jejuni_scopos_sp._HMT_314 (SPP115)	362	45	47	6	1	11	0	9	20	50	67	0	10	288	34	9	16	91	3	2	3
Fusobacterium hwasookii_sp._HMT_370 (SPP118)	135	585	22	23	32	11	28	1600	9	9	152	5	165	164	2	17	14	106	20	17	12
Haemophilus haemolyticus_influenzae_seminalis_sp._HMT_036_sp._ ...(5 species) (SPP119)	803	33	274	1106	509	19	492	1391	2783	617	2253	105	380	610	126	151	337	608	48	432	599
Porphyromonas catoniae_pasteri_sp._HMT_278 (SPP12)	52	16	128	26	0	0	1	274	57	0	15	3	8	4	0	0	9	40	4	253	0
Mogibacterium diversum_neglectum_pumilum_vescum (SPP120)	237	16	19	11	3	509	7	222	607	141	3	1	11	14	131	509	5	131	376	55	27
Escherichia_Pseudescherichia_Shigella boydii_coli_fergusonii_flexneri_marmotae_sonnei_vu ...(7 species) (SPP121)	0	5	13	13	3	0	0	0	0	0	14	5	16	0	1	0	7	0	0	6	0
Actinomyces naeslundii_oris_sp._HMT_169_sp._HMT_171_sp._HMT_17 ...(6 species) (SPP124)	726	290	290	86	280	225	78	39	51	127	3	268	211	36	89	58	51	77	571	486	150
Actinomyces johnsonii_naeslundii_sp._HMT_170_sp._HMT_171 (SPP125)	75	207	33	17	128	22	22	4	9	10	3	106	43	5	2	9	3	26	82	36	31
Parvimonas_Peptostreptococcus Candidatus massiliensis_micra_sp._HMT_110_sp._HMT_ ...(4 species) (SPP127)	33	2	0	12	0	187	2	323	0	2	1	4	44	31	16	26	1	269	272	21	0
Porphyromonas pasteri_sp._HMT_278 (SPP13)	44	199	135	33	58	609	153	2452	709	1103	168	1	135	626	274	17	41	364	49	17	41
Porphyromonas endodontalis_sp._HMT_285 (SPP130)	0	0	12	10	0	0	76	42	389	2	0	2	73	34	239	686	1	522	0	67	728
Treponema maltophilum_sp._HMT_260 (SPP131)	0	0	1	0	0	0	1	0	11	0	0	4	0	22	9	0	0	38	28	0	8
Aggregatibacter sp._HMT_513_sp._HMT_898 (SPP132)	29	1	0	21	2	10	8	3	0	23	53	0	26	66	1	0	13	38	13	5	8
Aggregatibacter segnis_sp._HMT_458_sp._HMT_512 (SPP133)	136	139	196	64	1372	565	29	3337	113	705	169	9	430	2977	116	16	76	660	14	70	338
Selenomonas sp._HMT_136_sp._HMT_149_sp._HMT_478 (SPP143)	44	49	25	10	9	43	9	20	174	3	14	32	2	16	18	135	53	26	144	9	9
Fretibacterium sp._HMT_358_sp._HMT_359_sp._HMT_361_sp._HMT_362 (SPP146)	0	0	6	0	0	0	0	0	17	0	0	0	2	6	1	0	0	238	1	0	52
Porphyromonas catoniae_sp._HMT_275_sp._HMT_277_sp._HMT_284 (SPP15)	1	1	31	14	8	1	18	32	0	2	3	0	3	16	0	0	68	8	2	8	0
Catonella morbi_sp._HMT_164 (SPP155)	4	7	10	1	1	1	2	85	6	0	1	6	26	18	0	16	7	11	10	7	21
Schaalia odontolytica_sp._HMT_180 (SPP158)	164	41	899	8	14	1042	56	77	193	512	1	2	40	111	57	194	4	32	196	30	64
Lachnoanaerobaculum gingivalis_umeaense (SPP160)	38	95	20	18	8	419	25	236	13	107	27	0	63	86	69	28	8	153	260	16	5
Campylobacter rectus_showae (SPP163)	28	28	43	24	22	8	217	663	56	6	0	12	20	178	52	8	1	501	151	2	109
Prevotella jejuni_veroralis (SPP19)	12	130	55	0	5	44	0	9	46	65	35	0	15	295	19	3	80	13	6	21	6
Selenomonas infelix_sp._HMT_126_sp._HMT_138_sp._HMT_146_sp._HM ...(9 species) (SPP2)	5	73	19	1	8	2	2	180	47	6	8	6	25	103	3	18	1	126	182	47	50
Eikenella_Neisseria canis_halliae (SPP20)	7	12	7	0	23	2	0	2	0	11	0	2	13	27	0	0	0	33	1	0	6
Eikenella_Kingella halliae_sp._HMT_012 (SPP21)	0	27	0	0	0	12	0	28	0	0	1	0	40	8	5	0	3	14	2	0	0
Leptotrichia sp._HMT_212_sp._HMT_215_sp._HMT_217 (SPP22)	0	0	0	0	0	9	1	75	0	0	0	0	0	1	0	0	0	6	0	0	0
Leptotrichia sp._HMT_215_sp._HMT_217 (SPP23)	4	5	0	0	0	5	0	12	2	0	0	0	0	1	0	0	0	2	5	0	0
Veillonella parvula_rogosae_tobetsuensis (SPP24)	298	252	84	58	77	1205	382	1175	69	601	140	18	82	1081	397	112	213	532	332	52	156
Kingella sp._HMT_459_sp._HMT_932 (SPP27)	0	6	1	28	0	3	2	80	12	23	0	0	0	0	0	2	5	23	4	4	10
Selenomonas dianae_infelix_sp._HMT_126_sp._HMT_138_sp._HMT_146 ...(11 species) (SPP3)	8	3	1	0	0	0	1	31	19	0	0	0	0	1	0	0	0	41	3	0	20
Prevotella sp._HMT_292_sp._HMT_293_sp._HMT_300 (SPP30)	1	60	15	3	19	0	12	7	0	0	4	2	0	19	3	36	0	7	2	18	19
Tannerella sp._HMT_286_sp._HMT_808 (SPP33)	204	152	14	12	46	13	1	582	7	8	45	1	53	114	6	34	12	114	10	27	6
Prevotella histicola_melaninogenica (SPP34)	9	40	264	0	0	91	0	11	86	256	48	0	9	359	49	11	148	25	2	6	9
Prevotella fusca_histicola_jejuni_melaninogenica_scopos_sp._H ...(6 species) (SPP35)	0	0	0	0	0	72	3	0	0	7	0	0	0	0	26	1	0	1	0	0	0
Prevotella histicola_jejuni_melaninogenica_scopos_sp._HMT_314 (SPP36)	35	114	41	0	6	96	2	34	27	44	92	1	15	141	1	98	5	50	1	40	23
Prevotella melaninogenica_scopos_sp._HMT_314 (SPP37)	133	1264	123	6	364	88	34	1159	214	24	464	25	174	1886	29	28	9	548	101	829	1112
Prevotella histicola_jejuni_scopos_sp._HMT_306_sp._HMT_314_ve ...(6 species) (SPP38)	17	28	56	0	0	29	0	5	53	38	21	0	2	128	21	1	61	14	1	6	0
Hallella_Prevotella dentalis_seregens (SPP39)	0	0	1	0	0	1	0	3	31	0	0	2	1	2	0	13	0	72	13	1	116
Lactobacillus delbrueckii_equicursoris_leichmannii (SPP4)	149	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	207	0	0
Selenomonas sp._HMT_442_sputigena (SPP41)	74	216	20	4	2	5	6	298	123	3	7	32	17	96	29	347	3	135	509	110	152
Prevotella sp._HMT_306_vespertina (SPP46)	37	250	621	38	4	264	0	26	1114	778	186	29	10	1268	232	68	1497	51	79	361	68
Gemella haemolysans_morbillorum_sanguinis_sp._MOT-043 (SPP5)	4305	610	537	3543	929	1675	815	7439	2924	1350	1369	267	4130	370	3812	2134	219	3857	1292	2718	6225
Streptococcus australis_lactarius_parasanguinis_parasanguinis_cl ...(10 species) (SPP50)	353	204	158	7	28	211	3	345	147	587	19	6	748	75	216	180	0	280	210	91	268
Streptococcus australis_parasanguinis_parasanguinis_clade_411_pa ...(7 species) (SPP51)	346	282	1030	332	309	1779	129	255	1103	4565	26	43	1046	311	2779	3786	3	1021	2789	181	431
Streptococcus lactarius_peroris_sp._HMT_074 (SPP52)	13	12	10	2	5	37	1	9	12	39	3	1	38	10	32	11	0	18	26	5	10
Alloprevotella sp._HMT_912_sp._HMT_913 (SPP54)	14	12	16	0	44	0	0	30	2	0	1	0	1	82	11	0	0	6	0	0	3
Prevotella shahii_sp._HMT_317 (SPP55)	0	188	8	1	19	5	0	8	6	0	2	0	1	27	0	2	0	26	19	0	4
Bifidobacterium dentium_moukalabense (SPP57)	9	1	0	0	0	18	0	27	46	0	0	0	0	0	0	2	0	0	192	37	715
Veillonella atypica_dispar (SPP59)	1035	937	4588	213	222	2299	222	958	1969	4259	749	72	170	3606	3815	1115	1709	1326	586	696	1031
Streptococcus anginosus_constellatus (SPP60)	42	3	3	41	8	5	1	283	134	12	13	28	76	14	12	215	0	180	262	36	487
Haemophilus parahaemolyticus_paraphrohaemolyticus_sputorum (SPP64)	292	7	78	265	10	40	0	15	6	423	147	0	41	11	0	0	139	93	99	0	19
Streptococcus dentirousetti_downei_sobrinus (SPP65)	82	40	2	0	13	8	0	0	7	0	0	16	0	0	192	6	0	0	402	0	18
Kocuria assamensis_palustris (SPP66)	0	2	1	7	2	0	0	0	0	0	0	12	0	0	0	0	0	0	0	1	0
Prevotella loescheii_sp._HMT_472 (SPP68)	54	68	10	19	0	0	0	16	0	0	3	2	11	131	0	3	7	0	4	1	8
Centipeda_Selenomonas dianae_noxia_periodontii (SPP7)	86	165	3	0	1	2	8	100	8	0	0	0	3	3	3	0	2	3	12	10	3
Peptoanaerobacter_Peptostreptococcaceae_[G-7] bacterium_HMT_081_stomatis (SPP72)	0	0	10	0	0	4	0	0	91	0	0	3	12	0	9	19	0	19	0	7	100
Treponema medium_sp._HMT_230_sp._HMT_237_vincentii (SPP76)	3	5	21	0	5	1	0	0	0	0	0	0	4	59	1	0	0	35	14	3	5
Aggregatibacter aphrophilus_paraphrophilus (SPP78)	0	1	0	54	0	5	0	0	0	0	0	2	16	0	2	0	178	6	0	5	0
Leptotrichia buccalis_sp._HMT_225 (SPP8)	13	72	0	17	2	19	0	23	0	5	14	2	2	26	14	1	4	28	26	8	11
Streptococcus salivarius_thermophilus_vestibularis (SPP80)	191	651	804	670	416	2028	175	168	1365	7964	32	790	267	574	8135	2831	1	1797	1084	773	1042
Streptococcus hongkongensis_porcinus_salivarius_thermophilus_ube ...(6 species) (SPP81)	32	122	114	10	17	192	2	30	161	869	9	42	83	60	506	123	0	187	77	52	137
Lautropia dentalis_mirabilis (SPP82)	99	70	8	139	1	10	176	1	0	0	14	54	86	2	5	0	2376	2	5	67	8
Neisseria cinerea_flavescens_perflava_subflava (SPP87)	449	618	1058	4702	46	5885	262	4952	1795	7513	65	1	2523	4337	1482	443	491	1920	3260	31	267
Streptococcus gordonii_himalayensis_sp._HMT_056 (SPP89)	932	1010	222	139	144	499	36	1006	332	1733	89	156	1358	255	1324	434	2	1662	1369	534	1142
Streptococcus cristatus_cristatus_clade_578_cristatus_clade_886_ ...(4 species) (SPP9)	1518	580	236	99	262	328	136	1433	199	1151	35	52	1091	185	622	694	2	1013	514	721	917
Mesocricetibacter_Pasteurella_Rodentibacter caecimuris_heidelbergensis_heylii_intestinalis_pne ...(6 species) (SPP96)	6	12	3	0	2	18	0	84	4	11	4	0	5	3	0	0	0	1	0	7	0
Peptococcus sp._HMT_167_sp._HMT_168 (SPP97)	52	43	15	11	0	5	15	25	1	0	0	2	3	4	7	1	0	30	4	0	14
Fusobacterium nucleatum_nucleatum_subsp._animalis (SPP99)	680	386	121	185	105	52	87	325	192	106	75	16	98	140	89	448	4	208	122	124	61