taxon lfc_(Intercept) lfc_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER se_(Intercept) se_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER W_(Intercept) W_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER p_(Intercept) p_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER q_(Intercept) q_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER diff_(Intercept) diff_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER passed_ss_(Intercept) passed_ss_Age_HIV_Shedding_AgeADULT HIV-Pos NON-SHEDDER Treponema 0.0619279769816601 -0.255423606606562 0.482876894464956 0.663672823147263 0.128247960694575 -0.384863742642488 0.899067545805827 0.703874269099825 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-3] -0.89179231151734 1.11909497359898 0.353813714975958 0.558218918434585 -2.52051368776911 2.00476002629446 0.0194735323127613 0.0574481125586058 1 1 FALSE FALSE FALSE TRUE Butyrivibrio 0.0864125472764148 -0.320135909089105 0.257311451823347 0.418290468137771 0.335828610285639 -0.765343543481517 0.740680216773905 0.453469758309459 1 1 FALSE FALSE TRUE TRUE Oribacterium -0.705401917419982 0.929616143695834 0.314751767835335 0.435737483641751 -2.24113726912892 2.13343166148206 0.0341388970787737 0.0428862648584871 1 1 FALSE FALSE TRUE TRUE Fusobacterium 0.160945483516593 -0.369904957709027 0.216042320315604 0.417838410068508 0.744972018822409 -0.88528232157589 0.463235101466 0.384440412791515 1 1 FALSE FALSE TRUE TRUE Peptoniphilaceae_[G-1] NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-9] -1.39572458213674 1.9017510760246 0.401037442618221 0.489049672095816 -3.48028496547502 3.88866649858832 0.00250491438845291 0.000988057383116288 0.205402979853139 0.0909012792466985 FALSE FALSE FALSE FALSE Romboutsia -1.07106224362055 0.980638789146017 0.059459895087865 0.331031241462323 -18.0131875785825 2.96237534806101 1.64246812808476e-12 0.0087266922534079 1.56034472168052e-10 0.767948918299895 TRUE FALSE TRUE TRUE Eikenella -0.135472141120212 0.0747214792461787 0.361687388236536 0.480552810106311 -0.374555888665976 0.1554906717321 0.711149234312088 0.877683183145387 1 1 FALSE FALSE TRUE TRUE Bacteroidetes_[G-5] 0.408718878126333 -0.974787864435481 0.262868983745886 0.381400631784435 1.55483873487881 -2.55581082777656 0.139540426735669 0.0211532074107336 1 1 FALSE FALSE FALSE TRUE Granulicatella -0.0193275636236455 -0.0994953869986704 0.331179558586928 0.44625409681909 -0.0583597722821783 -0.222956803551779 0.953926039395289 0.82538077718784 1 1 FALSE FALSE TRUE TRUE Prevotella -0.0651309436106415 -0.030790317018177 0.38429501471733 0.535178967649983 -0.169481625096149 -0.0575327486305748 0.866781770804866 0.954578205082159 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-6] -1.09473572451525 0.941787589456035 0.306952100714534 0.501053463615577 -3.56647086619341 1.87961496695411 0.00913995716459787 0.102223696232833 0.694636744509438 1 FALSE FALSE FALSE TRUE Ruminococcaceae_[G-1] -0.635358416806071 0.793389636645394 0.407053024340894 0.501158573317569 -1.5608738390652 1.58311097302659 0.132208931433305 0.127051162035844 1 1 FALSE FALSE TRUE TRUE Centipeda 0.273029288968204 -0.656164031589803 0.350339372715025 0.448710440385442 0.779328018008108 -1.4623328822618 0.444481014663727 0.158455359907956 1 1 FALSE FALSE TRUE TRUE Bulleidia 0.557603368833218 -0.961075540704273 0.115165663801498 0.307394415225668 4.84175013999237 -3.12652245161551 0.000517542886821645 0.00963723299338413 0.0439911453798398 0.838439270424419 TRUE FALSE FALSE FALSE Leptotrichia 0.170218705407392 -0.383814790545227 0.237487807826659 0.358073640802083 0.716747133106024 -1.07188786553929 0.480173212005151 0.294009310751831 1 1 FALSE FALSE TRUE TRUE Shuttleworthia 0.0524433938234575 -0.256835801563236 0.369345836726282 0.498221301179008 0.141989941698795 -0.515505461037998 0.888665136754053 0.612473408486944 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-2] -1.51612827231178 1.39417965250809 0.0606557828341632 0.334526101254736 -24.9956096759475 4.16762592598552 5.13768799601339e-13 0.000948439339701339 4.93218047617285e-11 0.0882048585922246 TRUE FALSE TRUE TRUE Cardiobacterium 0.206155751331508 -0.47030018419532 0.463116992095415 0.566279663979614 0.445148320727205 -0.830508694043886 0.660201726493937 0.414437028426191 1 1 FALSE FALSE TRUE TRUE Filifactor -0.329709459157888 0.266677846818862 0.260086529465434 0.569273002974632 -1.26769140960723 0.468453352653975 0.224234116132824 0.646195477720485 1 1 FALSE FALSE TRUE TRUE Clostridioides NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Veillonellaceae_[G-1] 0.0277582097253751 -0.233595597564283 0.286806703156528 0.422349050581335 0.096783685387666 -0.553086593287601 0.924639044808487 0.591267164550426 1 1 FALSE FALSE TRUE TRUE Campylobacter -0.0892692825817158 0.00541719143843546 0.133389066127224 0.251127341526464 -0.669239879800737 0.0215714919988694 0.509476269629531 0.982961026431332 1 1 FALSE FALSE TRUE TRUE Erysipelotrichaceae_[G-1] 0.760652373633951 -1.37496087051707 0.465695355921052 0.536976745563893 1.63336903398904 -2.5605594318115 0.130659876199831 0.0264921968085625 1 1 FALSE FALSE TRUE FALSE Dialister -0.498414106263203 0.619134426960666 0.652763886063752 0.746202459660502 -0.763544241500096 0.829713731099669 0.452284899785225 0.414553534969331 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-8] -0.319788640391712 0.0229169153005064 0.275193841414905 0.490614596872493 -1.16204868084083 0.0467106267253242 0.264643689094946 0.963403641299786 1 1 FALSE FALSE TRUE TRUE Lautropia 0.814050085030983 -1.34956185998061 0.522851357373886 0.656774240296686 1.55694361992229 -2.05483372699114 0.132054013952894 0.0504866304340687 1 1 FALSE FALSE TRUE FALSE Peptidiphaga -0.572119091977431 0.73247867669802 0.548397848078288 0.653784839140762 -1.0432555378951 1.12036656839685 0.307225181489437 0.273644183836254 1 1 FALSE FALSE TRUE TRUE Mitsuokella 0.228427789643181 -0.41582930770245 0.288646833805828 0.399355459250317 0.791374658891436 -1.04125109115337 0.445454506431559 0.320104231762051 1 1 FALSE FALSE TRUE TRUE Cryptobacterium 3.67723696800132 -4.61121903225772 0.059459895087865 0.270576506584102 61.8439868177938 -17.0422003390913 2.09218759674915e-08 1.27287665861653e-05 1.9666563409442e-06 0.00122196159227187 TRUE TRUE FALSE FALSE Johnsonella -0.689724930196481 0.371189849651866 0.059459895087865 0.312112310182621 -11.5998342946496 1.18928295213565 2.77500225168601e-06 0.268426864953548 0.000258075209406799 1 TRUE FALSE FALSE TRUE Bacteroidetes_[G-3] -0.438548668553732 -0.0205985910729122 0.118357437321922 0.31105586740174 -3.70529033474185 -0.0662215159127937 0.00599680798749984 0.948826482799058 0.467751023024988 1 FALSE FALSE FALSE TRUE Corynebacterium 0.344990853870324 -0.645973013239624 0.429822979544309 0.548900501759139 0.802634736365369 -1.17684901210581 0.429750606259464 0.25033960814854 1 1 FALSE FALSE TRUE TRUE Scardovia -0.887366239010621 1.34671318095214 0.185476850085265 0.412659447918774 -4.78424255427397 3.26349775279401 0.000356785846068428 0.00616595394317561 0.0310403686079532 0.54876990094263 TRUE FALSE FALSE FALSE Haemophilus -0.0108300580629647 -0.112241645339691 0.307982304102456 0.44850444400027 -0.0351645465297964 -0.250257599096662 0.972227804172158 0.804433297346503 1 1 FALSE FALSE TRUE TRUE Weeksellaceae_[G-1] -0.526397943162713 0.643029354824427 0.422213294837188 0.527670755631745 -1.24675833186565 1.21861851914566 0.226213691552574 0.236502459439759 1 1 FALSE FALSE TRUE TRUE Abiotrophia -0.31326929023593 0.341417202919756 0.46082439726907 0.616325044770366 -0.679801877010899 0.55395639981978 0.502876665687161 0.584530116471142 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-1] -1.10772443363809 1.37077702897669 0.446159217194767 0.636026113913972 -2.48280073782388 2.15522130143558 0.0207661409474014 0.0418489900436003 1 1 FALSE FALSE TRUE TRUE Capnocytophaga -0.0706385355576222 -0.0225289290977049 0.404861159196815 0.495448508376926 -0.174475950465978 -0.0454717871116597 0.86289669765787 0.964092541165566 1 1 FALSE FALSE TRUE TRUE Lancefieldella -0.884346626298174 1.14030639881563 0.385552179177381 0.51341305533785 -2.29371450625704 2.22103116965978 0.0308636669193948 0.0360389354498355 1 1 FALSE FALSE TRUE TRUE Kingella 0.788392984149146 -1.31107620865786 0.400541969837262 0.573809880785947 1.96831554123895 -2.28486168077496 0.0602156909578822 0.0310746668523695 1 1 FALSE FALSE TRUE TRUE Peptostreptococcaceae_[G-4] -1.00985524258372 0.720484385404173 0.110296174638241 0.354551026988332 -9.15585010899903 2.03210350714309 3.54520492353295e-06 0.0695596494892616 0.000326158852965031 1 TRUE FALSE FALSE TRUE Stomatobaculum -0.843306713263603 1.13647333746126 0.496264272607064 0.603132725556901 -1.699309742435 1.88428398809218 0.101672764583477 0.0712059547216688 1 1 FALSE FALSE FALSE FALSE Peptostreptococcaceae_[G-5] -1.02850337581791 0.900599207773911 0.286271240233828 0.503819365963447 -3.59275830494822 1.7875438472908 0.00490656344610869 0.104142246753972 0.387618512242587 1 FALSE FALSE FALSE TRUE Ruminococcaceae_[G-2] -0.625918275317348 0.729848528283384 0.436643318490122 0.547887358865829 -1.43347727724708 1.33211419550586 0.165781530747506 0.196458818641206 1 1 FALSE FALSE TRUE TRUE Desulfobulbus -0.554537820463769 0.553181336917128 0.0888772240313577 0.341110428934168 -6.23936927044568 1.62170748823364 0.000248558066626368 0.143523648956115 0.0221216679297468 1 TRUE FALSE FALSE TRUE Pseudoleptotrichia 0.480514484035636 -0.849258458487592 0.380442729823823 0.60703497796523 1.26304025906384 -1.39902722135435 0.218228042582739 0.174089761150104 1 1 FALSE FALSE TRUE TRUE Parvimonas -0.864354288210068 1.01284725120299 0.359108280170901 0.533671934733511 -2.40694613835893 1.89788367212669 0.0245124097963136 0.0703330453236221 1 1 FALSE FALSE TRUE FALSE Absconditabacteria_(SR1)_[G-1] -0.93967621603488 1.26986454587614 0.443461243119193 0.639622121192075 -2.11895905361523 1.98533556580169 0.045619550292195 0.0597119322720816 1 1 FALSE FALSE FALSE TRUE Solobacterium -1.06571208222833 1.38022920776786 0.436056626351134 0.584903347596396 -2.44397635037925 2.35975604078824 0.0222520924024087 0.026759063940463 1 1 FALSE FALSE TRUE TRUE Ottowia -0.551137351112833 0.320699241246005 0.139823651434222 0.376911212140819 -3.94166040909115 0.850861505086208 0.00195702786551209 0.411503236813082 0.162433312837504 1 FALSE FALSE FALSE FALSE Anaeroglobus 0.342812463840702 -0.684025322869547 0.808965987511714 0.899671954758002 0.423766226433269 -0.760305263770881 0.677378370262657 0.458130346867771 1 1 FALSE FALSE TRUE TRUE Bacteroidales_[G-2] -0.444334173528324 0.379914748304967 0.242816963584472 0.451195500396785 -1.82991405118097 0.8420180342465 0.0838750718638367 0.41082615780191 1 1 FALSE FALSE TRUE TRUE Actinomyces -0.0594608938577035 -0.0392953916475831 0.348364939162093 0.493606310616717 -0.170685643626257 -0.0796087708005334 0.865844851487804 0.937182252447689 1 1 FALSE FALSE TRUE TRUE Limosilactobacillus -0.0455065757420402 0.203770503420279 0.591126794795651 0.650455408892061 -0.0769827660371437 0.313273593600162 0.94079141329617 0.763200859670316 1 1 FALSE FALSE TRUE TRUE Alloprevotella 0.03315649034051 -0.178221467944903 0.434389586418709 0.593544895014309 0.0763289254097136 -0.300266196275864 0.939764980852033 0.76645681841433 1 1 FALSE FALSE TRUE TRUE Mycoplasma -0.567386899569576 0.465036251391545 0.254060999029208 0.437026440686222 -2.23327036317112 1.06409179879675 0.0437366148508449 0.306653535485556 1 1 FALSE FALSE FALSE TRUE Rothia -0.341561247101205 0.383855138217669 0.392816400380167 0.49214245539618 -0.869518805148264 0.779967535840128 0.3928354024867 0.442732196954944 1 1 FALSE FALSE TRUE TRUE Pseudoramibacter 0.129671835355345 -0.350127789238473 0.260546338990259 0.385345525392995 0.497692026139708 -0.908607382637685 0.629462590646109 0.384932006679453 1 1 FALSE FALSE TRUE TRUE Streptobacillus -0.811597925655339 0.561121708128255 0.433167467306663 0.522028529527352 -1.87363545720936 1.07488705384799 0.119852459755517 0.331535869323553 1 1 FALSE FALSE TRUE TRUE Cloacibacterium -0.458327507769302 0.565026899364092 0.558672814109446 0.645637827291491 -0.820386272956383 0.875145283439218 0.424841686643066 0.39529229595291 1 1 FALSE FALSE TRUE TRUE Pseudostreptobacillus 0.967666940349073 -1.54799998773335 0.316781222096591 0.414199154157036 3.05468529335372 -3.73733256622357 0.0282727950230212 0.0134685773118069 1 1 FALSE FALSE FALSE FALSE Phocaeicola -0.33558617656178 0.0381564365538728 0.0650256201035576 0.30522780635623 -5.16083008554686 0.125009700162575 0.00130825822944207 0.904030230573236 0.109893691273134 1 FALSE FALSE FALSE TRUE Peptostreptococcus -1.76522240590885 2.29587657887144 0.410326682862041 0.523727139497463 -4.30199272832166 4.38372657386903 0.000265253812525385 0.000216337352910923 0.0233423355022339 0.0205520485265377 TRUE TRUE TRUE TRUE Catonella -0.699086105590216 0.849862619377779 0.233153414958466 0.370656514388819 -2.99839530857719 2.29285763607617 0.00641444875297795 0.0313331080530795 0.493912553979302 1 FALSE FALSE FALSE FALSE Megasphaera -1.12754813032717 1.50338911950367 0.538490548759188 0.676650506540082 -2.09390514452911 2.22181038065124 0.0470090961813688 0.0359795098096534 1 1 FALSE FALSE TRUE TRUE Lachnospiraceae_[G-2] -0.151838794114828 0.0258967786933392 0.376027420772332 0.49948062962097 -0.40379713214255 0.0518474134081855 0.690870503477595 0.959191501443873 1 1 FALSE FALSE TRUE TRUE Riemerella 0.0237684076423539 -0.159507395135322 0.34620029723972 0.507871936541148 0.0686550757808735 -0.314070110314903 0.945832989990111 0.756181569400712 1 1 FALSE FALSE TRUE TRUE Streptococcus -0.121379869567857 0.0535830719176453 0.256639686721722 0.367569244540388 -0.472958298532644 0.145776809984867 0.640346292788325 0.885266627659759 1 1 FALSE FALSE TRUE TRUE Morococcus_Neisseria -0.233310724411111 0.221479354182528 0.46414651472177 0.565566876416583 -0.502666112985827 0.391605950450662 0.619598514821255 0.69866748847331 1 1 FALSE FALSE TRUE TRUE Kingella_Neisseria -0.277188633619787 0.255262979598572 0.503597947638253 0.594910191467333 -0.550416527548874 0.429078175596507 0.587120791287145 0.671693470990611 1 1 FALSE FALSE TRUE TRUE Peptoanaerobacter_Peptostreptococcaceae_[G-7] -0.515551923247999 0.507203600284455 0.403579178588454 0.563340088460362 -1.2774492605173 0.900350624204056 0.219669482367698 0.381285759214445 1 1 FALSE FALSE TRUE TRUE Mogibacterium -0.986431607223746 1.20231477006787 0.236769423717132 0.435212294098464 -4.16621197001447 2.76259376486239 0.00037206708906142 0.0110805965692485 0.0319977696592821 0.952931304955373 TRUE FALSE TRUE TRUE Escherichia_Pseudescherichia_Shigella NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Parvimonas_Peptostreptococcus -1.6545832223477 1.94460002628811 0.339357823569342 0.477285970537411 -4.87563010908341 4.07428700260883 0.000168324343925011 0.00088292080541978 0.015149190953251 0.0829945557094593 TRUE FALSE FALSE FALSE Porphyromonas -0.0684699456009994 -0.0257818140326398 0.531672046037005 0.643663326087745 -0.128782293730436 -0.040054812799953 0.898560374021689 0.968367594445439 1 1 FALSE FALSE TRUE TRUE Aggregatibacter -0.36718218516411 0.422286545312026 0.341330962127194 0.480145316288551 -1.07573653112454 0.879497375036865 0.292317572130611 0.387507624733044 1 1 FALSE FALSE TRUE TRUE Moraxella NA NA NA NA NA NA 1 1 1 1 FALSE FALSE TRUE TRUE Fretibacterium -1.37453779394006 1.41971849741135 0.208111483316945 0.357149921039464 -6.60481474655915 3.9751331689486 1.70265536203197e-05 0.00158460731415266 0.00154941637944909 0.142614658273739 TRUE FALSE FALSE FALSE Schaalia -1.47339121186737 2.08160008536692 0.739630965470658 0.808908196450038 -1.99206263752058 2.57334527515261 0.0573930702388692 0.0163902274842502 1 1 FALSE FALSE FALSE TRUE Lachnoanaerobaculum -0.410364335180188 0.487059770336143 0.223242997410517 0.351126633014403 -1.83819577742713 1.38713422606187 0.0779450753099088 0.177644455205882 1 1 FALSE FALSE TRUE TRUE Eikenella_Neisseria -0.150391160673899 0.0930409584145244 0.319021083152275 0.4923330303713 -0.471414488308643 0.188979720382271 0.642712746135305 0.852112742726426 1 1 FALSE FALSE TRUE TRUE Eikenella_Kingella 0.480893259085294 -0.946584446380255 0.406985304964347 0.521105017594204 1.18159858161813 -1.81649459210808 0.252741286141566 0.085986007424688 1 1 FALSE FALSE TRUE TRUE Tannerella -0.321825409588155 0.337200414858283 0.32309326205631 0.481351844801917 -0.996075893195403 0.700527937099826 0.329150684510283 0.490333865342842 1 1 FALSE FALSE TRUE TRUE Hallella_Prevotella -0.708130864414861 0.577022871385298 0.201388383218787 0.427640417017292 -3.51624484539187 1.34931790453746 0.00425272720383699 0.202143159963727 0.340218176306959 1 FALSE FALSE FALSE TRUE Lactobacillus 2.43640637008348 -3.80303719614171 0.0594598950878649 0.218814783669524 40.9756251080356 -17.3801656924855 0.0155334647683114 0.0365887568673326 1 1 FALSE FALSE FALSE FALSE Selenomonas 0.0991911463765046 -0.277273451998895 0.246412182802731 0.375443849702677 0.402541567743481 -0.738521758229558 0.690706903530246 0.467074577334959 1 1 FALSE FALSE TRUE TRUE Gemella -0.132052338707355 0.0695917756268933 0.438740918252827 0.553728697912549 -0.30098022138719 0.125678470141138 0.76591862418521 0.900991685595914 1 1 FALSE FALSE TRUE TRUE Bifidobacterium 2.10754599534846 -3.77766791938551 0.356410731298142 0.462642089094855 5.91325066917098 -8.16542205828355 0.0040951489922426 0.00122465431608203 0.33170706837165 0.111443542763464 FALSE FALSE FALSE FALSE Veillonella -0.509866523731399 0.63631305316296 0.316650720403115 0.455239324129945 -1.61018589530543 1.39775502562105 0.119913158952753 0.174467295722233 1 1 FALSE FALSE TRUE TRUE Kocuria NA NA NA NA NA NA 1 1 1 1 FALSE FALSE FALSE FALSE Centipeda_Selenomonas -0.291241037060291 0.306706260130735 0.277500582496381 0.367988544820487 -1.04951504764531 0.833466868596014 0.314618964584613 0.42086198580436 1 1 FALSE FALSE TRUE TRUE Neisseria -0.547108541303309 0.692176079520825 0.372327274018281 0.466740182541516 -1.46942912722651 1.48300083303682 0.15418932856115 0.150572083992157 1 1 FALSE FALSE TRUE TRUE Mesocricetibacter_Pasteurella_Rodentibacter 0.249147327190253 -0.586638688303589 0.346397614246754 0.446879901699988 0.719252434033148 -1.31274350462382 0.481756534753445 0.206716034654388 1 1 FALSE FALSE TRUE TRUE Peptococcus -0.0958911210748897 -0.104872505821238 0.33224791794839 0.459027081549765 -0.288613158712962 -0.228466925017078 0.775707061139081 0.821493338029447 1 1 FALSE FALSE TRUE TRUE