taxon lfc: Patient_no_PI vs. Healthy_Control lfc: Patient_PI vs. Healthy_Control lfc: Patient_PI vs. Patient_no_PI se: Patient_no_PI vs. Healthy_Control se: Patient_PI vs. Healthy_Control se: Patient_PI vs. Patient_no_PI W: Patient_no_PI vs. Healthy_Control W: Patient_PI vs. Healthy_Control W: Patient_PI vs. Patient_no_PI p: Patient_no_PI vs. Healthy_Control p: Patient_PI vs. Healthy_Control p: Patient_PI vs. Patient_no_PI q: Patient_no_PI vs. Healthy_Control q: Patient_PI vs. Healthy_Control q: Patient_PI vs. Patient_no_PI diff: Patient_no_PI vs. Healthy_Control diff: Patient_PI vs. Healthy_Control diff: Patient_PI vs. Patient_no_PI Massilia aurea (SP1) -0.244104072449449 -0.932153616497976 -0.688049544048527 0.503639774905715 0.465071547637461 0.570621979289749 -0.484679893471772 -2.00432303638713 -1.20578871655967 1 1 1 1 1 1 FALSE FALSE FALSE Atopobium sp._oral_taxon_199 (SP10) 0.978897109873913 0.825536804115912 -0.153360305758002 0.644466670563702 0.595076777337287 0.683230906503358 1.51892588800239 1.38727780272293 -0.224463361212492 1 1 1 1 1 1 FALSE FALSE FALSE Sphingomonas echinoides (SP104) 0.68169667708291 -0.833888023087568 -1.51558470017048 0.497103444792817 0.45903747723032 0.565480778925861 1.37133766467265 -1.81660118062467 -2.68017014309373 1 1 1 1 1 1 FALSE FALSE FALSE Propionibacterium acnes (SP112) -0.509712810676711 -0.253903719512632 0.255809091164079 0.633113430745572 0.584595957294177 0.674030461372574 -0.805089239816724 -0.434323426880737 0.379521558481434 1 1 1 1 1 1 FALSE FALSE FALSE Parvimonas micra (SP12) 0.153392736216921 0.599830412271498 0.446437676054577 0.784442506853802 0.72429679143049 0.798092134674418 0.195543631147859 0.82815555635257 0.559381124883158 1 1 1 1 1 1 FALSE FALSE FALSE Porphyromonas endodontalis (SP127) -0.31076060599175 0.0869637007621121 0.397724306753862 0.461191427599935 0.425884868699693 0.53736920817413 -0.673821297175805 0.204195328722593 0.740132297690161 1 1 1 1 1 1 FALSE FALSE FALSE Pseudomonas sp._Oral_Taxon_C61 (SP13) 0.695007509978134 0.885377949365747 0.190370439387613 0.863506242682329 0.797285546610203 0.863932922924961 0.804866804227398 1.11049040476161 0.220353263935223 1 1 1 1 1 1 FALSE FALSE FALSE Abiotrophia defectiva (SP15) 0.533693227496994 -0.10001523917831 -0.633708466675304 0.570333946171806 0.52664070327713 0.623525966833671 0.935755676265193 -0.189911715057239 -1.0163305144986 1 1 1 1 1 1 FALSE FALSE FALSE TM7_[G-1] sp._oral_taxon_952 (SP156) 0.0290321463348458 0.0261715919947666 -0.00286055434007927 0.433981417849024 0.400765403503411 0.516207208898676 0.0668972106657011 0.0653040201723496 -0.00554148468050696 1 1 1 1 1 1 FALSE FALSE FALSE Psychrobacter arcticum (SP16) -0.60572853114454 -1.93736884281049 -1.33164031166595 0.647561749795263 0.597934021317559 0.685742459814207 -0.935398873290541 -3.24010471680715 -1.94189566740076 1 1 1 1 1 1 FALSE FALSE FALSE Psychrobacter cibarius (SP17) 0.691190473146525 -0.810001900169194 -1.50119237331572 0.71801543969732 0.662973926156677 0.743277154758381 0.9626401257303 -1.22177037167186 -2.01969395091083 1 1 1 1 1 1 FALSE FALSE FALSE Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP173) -0.0174492734428335 -0.138480046797365 -0.121030773354532 0.445925807525796 0.411792138310793 0.525483907151905 -0.0391304408678436 -0.336286281145198 -0.230322511702617 1 1 1 1 1 1 FALSE FALSE FALSE Pseudomonas sp._Oral_Taxon_C85 (SP18) -0.200000209175389 -0.0548443111562538 0.145155898019136 0.591091406155096 0.545803069300985 0.640152659262138 -0.33835749782989 -0.100483698683654 0.226752003477494 1 1 1 1 1 1 FALSE FALSE FALSE Pseudomonas fluorescens (SP2) 0.603017823538663 -0.0249042423743605 -0.627922065913024 0.812798205661953 0.75047371190317 0.821636708626598 0.741903487652951 -0.0331846965181557 -0.764233218063764 1 1 1 1 1 1 FALSE FALSE FALSE Rothia dentocariosa (SP20) -0.194066891502562 0.0140250194310005 0.208091910933562 0.482032130697766 0.445124240910884 0.553655716710617 -0.40260156770388 0.0315081007547472 0.375850740185397 1 1 1 1 1 1 FALSE FALSE FALSE Mogibacterium diversum (SP205) 0.196216301405878 0.0207317497645909 -0.175484551641288 0.4560829264217 0.421168872266307 0.533387960975372 0.430220668301129 0.0492243162535576 -0.328999835917538 1 1 1 1 1 1 FALSE FALSE FALSE Methylobacterium rhodesianum (SP206) -0.187101641233086 -0.171691094409739 0.0154105468233464 0.40374193732792 0.372848796892042 0.492782107556052 -0.463418891957021 -0.46048450696611 0.0312725372675864 1 1 1 1 1 1 FALSE FALSE FALSE Pseudomonas sp._Oral_Taxon_B99 (SP21) 1.30803693762854 0.421856334212207 -0.886180603416334 0.771346521117656 0.712207077338566 0.787246236011633 1.69578380379967 0.592322580939008 -1.12567143909881 1 1 1 1 1 1 FALSE FALSE FALSE Haemophilus parainfluenzae (SP213) -0.19486867613547 -0.135403600949668 0.0594650751858017 0.415735499463461 0.383921134570639 0.502066121206497 -0.468732346376393 -0.352685978335362 0.118440724586043 1 1 1 1 1 1 FALSE FALSE FALSE Psychrobacter urativorans (SP23) 0.172910414698007 -0.577288913222055 -0.750199327920061 0.502009599043607 0.463566636940095 0.569339023419241 0.344436470990641 -1.24532023493454 -1.31766714920513 1 1 1 1 1 1 FALSE FALSE FALSE Mogibacterium timidum (SP25) -0.15493650077099 1.05055858292156 1.20549508369255 0.871585245219433 0.804743799123588 0.870692820460976 -0.177764024369163 1.30545719527839 1.38452397374118 1 1 1 1 1 1 FALSE FALSE FALSE Psychrobacter pulmonis (SP26) 0.34733135950263 0.09734891179667 -0.24998244770596 0.53490202562417 0.493931519280896 0.595319717837676 0.64933640716229 0.197089896061701 -0.419912931179144 1 1 1 1 1 1 FALSE FALSE FALSE Pseudomonas viridiflava (SP27) 0.0379102747093748 -0.226045729022182 -0.263956003731557 0.671692699140363 0.620210686258185 0.70537180814548 0.0564399088420831 -0.364466033931061 -0.374208326280482 1 1 1 1 1 1 FALSE FALSE FALSE Olsenella uli (SP28) 0.644227148868027 1.29043906264973 0.646211913781701 0.699163998348616 0.645571044874699 0.727817202042251 0.921424945205494 1.99891099964094 0.887876670087535 1 1 1 1 1 1 FALSE FALSE FALSE Burkholderia cepacia (SP3) -0.406737697289449 -1.004189847697 -0.597452150407548 1.00579036388188 0.928637563631114 0.98371022141603 -0.404396096736929 -1.08135820370055 -0.607345677009972 1 1 1 1 1 1 FALSE FALSE FALSE Actinomyces sp._oral_taxon_180 (SP32) 0.609983919272125 0.0250160297045663 -0.584967889567558 0.564211080256011 0.520988345259794 0.61863578368283 1.0811271536804 0.048016486226946 -0.945577195818124 1 1 1 1 1 1 FALSE FALSE FALSE Anaerolineae_[G-1] sp._oral_taxon_439 (SP33) -0.357714284679327 -0.0622296877135996 0.295484596965727 0.553387956205836 0.510996916782123 0.610007796041037 -0.646407788004467 -0.121780945578842 0.484394787875546 1 1 1 1 1 1 FALSE FALSE FALSE Pseudomonas fragi (SP38) 0.0379639280232336 0.179283834748194 0.14131990672496 0.644049332801876 0.594691509094357 0.682892360095769 0.0589456833346524 0.301473675017189 0.20694316554536 1 1 1 1 1 1 FALSE FALSE FALSE Acinetobacter lwoffii (SP4) -0.430927152791914 -0.985321767570818 -0.554394614778904 0.777766647504772 0.718133892126187 0.792561003673438 -0.554057125198686 -1.37205857901173 -0.699497719682577 1 1 1 1 1 1 FALSE FALSE FALSE TM7_[G-1] sp._oral_taxon_349 (SP41) 0.639635356636093 0.897477415080993 0.2578420584449 0.748848835762772 0.691438088205202 0.768657756225623 0.854158177310333 1.29798666054197 0.335444554298124 1 1 1 1 1 1 FALSE FALSE FALSE Peptoniphilaceae_[G-1] sp._oral_taxon_113 (SP42) -0.322424682028049 0.108160482460542 0.430585164488591 0.558137754366146 0.515381720127596 0.613791684748161 -0.57767939815183 0.209864801634338 0.701516777089055 1 1 1 1 1 1 FALSE FALSE FALSE Pseudomonas tolaasii (SP43) 0.906702466437945 0.328156989612837 -0.578545476825108 0.563707148574731 0.520523137892003 0.618233598798727 1.60846366545189 0.630436892664937 -0.935804003453167 1 1 1 1 1 1 FALSE FALSE FALSE TM7_[G-1] sp._oral_taxon_346 (SP46) -0.352674402263095 0.441336277732403 0.794010679995498 0.76302693869932 0.704526759807378 0.78036570127898 -0.46220439197635 0.6264294032679 1.01748536448252 1 1 1 1 1 1 FALSE FALSE FALSE TM7_[G-5] sp._oral_taxon_356 (SP47) 0.382268194893352 0.738712289877885 0.356444094984533 0.721989524099591 0.66664264040628 0.746541990382071 0.529465015950317 1.10810837036719 0.477460209307328 1 1 1 1 1 1 FALSE FALSE FALSE Massilia brevitalea (SP5) -0.121907412491542 -0.136078909481837 -0.014171496990295 0.451503346512016 0.416941151700605 0.529822346206675 -0.270003342020185 -0.326374379038392 -0.0267476392639109 1 1 1 1 1 1 FALSE FALSE FALSE Granulicatella adiacens (SP51) 0.261558767113936 0.249395001953203 -0.012163765160733 0.508827057450008 0.469860229858345 0.574707626738722 0.514042567674645 0.530785510466362 -0.0211651361401942 1 1 1 1 1 1 FALSE FALSE FALSE Brevundimonas diminuta (SP54) -0.201983047757065 -1.50454816073096 -1.30256511297389 0.529064536353996 0.488542603621164 0.590694400359214 -0.381773930925354 -3.07966623499973 -2.20514213810352 1 1 1 1 1 1 FALSE FALSE FALSE Psychrobacter sp._cryopeg55 (SP56) -0.622530973567693 -1.25434751944751 -0.631816545879813 0.593525168075455 0.548049810544127 0.642106891435509 -1.04887038840542 -2.28874729142254 -0.983974092642596 1 1 1 1 1 1 FALSE FALSE FALSE Fusobacterium nucleatum_subsp._polymorphum (SP59) -0.363885951315179 -0.239566979653258 0.124318971661921 0.413637152781286 0.381983969589245 0.500441462494734 -0.879722599549917 -0.627165008811415 0.248418608326702 1 1 1 1 1 1 FALSE FALSE FALSE Pseudomonas antarctica (SP6) 0.308710921024008 0.348955312951985 0.0402443919279769 0.690292737016081 0.63738146308565 0.720557846936075 0.447217397011113 0.547482682132996 0.0558517155827285 1 1 1 1 1 1 FALSE FALSE FALSE Propionibacterium propionicum (SP60) 0.240152281130839 0.927537000437516 0.687384719306677 0.673380795932788 0.621769066082806 0.706748095811526 0.356636664694561 1.49177090182545 0.972602152563829 1 1 1 1 1 1 FALSE FALSE FALSE Olsenella sp._oral_taxon_807 (SP61) 0.598585172716762 0.85591734257101 0.257332169854248 0.661112786512211 0.610443759002576 0.696755255416698 0.905420655792604 1.40212317670267 0.369329356117091 1 1 1 1 1 1 FALSE FALSE FALSE Actinomyces oricola (SP64) -0.209971879838928 0.239766930821335 0.449738810660263 0.50743936612222 0.468579171529017 0.573614160090795 -0.413787131738523 0.511689262753515 0.784044122252971 1 1 1 1 1 1 FALSE FALSE FALSE Fusobacterium nucleatum_subsp._vincentii (SP7) -0.247365222783456 -0.0139880021797032 0.233377220603753 0.64574699573225 0.596258718410475 0.68426967466293 -0.383068329265634 -0.02345961869873 0.341060300120291 1 1 1 1 1 1 FALSE FALSE FALSE Solobacterium moorei (SP72) 0.246257748417971 0.216595067902986 -0.0296626805149848 0.460086243379661 0.42486460041253 0.536507547374514 0.535242581062699 0.509797868997979 -0.0552884682799784 1 1 1 1 1 1 FALSE FALSE FALSE Rothia mucilaginosa (SP74) 0.376232331394907 0.0317150530528839 -0.344517278342023 0.532230228930124 0.491465033216412 0.593201955432961 0.706897712576754 0.0645316572072757 -0.580775695674452 1 1 1 1 1 1 FALSE FALSE FALSE Bacteroidales_[G-2] sp._oral_taxon_274 (SP76) -0.676230176282985 -0.140681385935804 0.535548790347181 0.584756158926938 0.539954649877254 0.635070335448815 -1.15643104558985 -0.260542965909794 0.843290515165851 1 1 1 1 1 1 FALSE FALSE FALSE Atopobium parvulum (SP78) 0.356089500761844 -0.062508413046911 -0.418597913808755 0.428580064833426 0.395779000896457 0.512017802375118 0.83085875891181 -0.157937669520936 -0.817545624130621 1 1 1 1 1 1 FALSE FALSE FALSE Actinomyces timonensis (SP79) 0.0999191953862579 -0.0501859865866517 -0.15010518197291 0.512151839795651 0.472929528546119 0.577328909334781 0.195096820165922 -0.106117261785141 -0.259999420687016 1 1 1 1 1 1 FALSE FALSE FALSE Atopobium rimae (SP8) 0.870402316196487 0.607377712228231 -0.263024603968256 0.737585752029355 0.681040454098376 0.759373385963461 1.18006931912894 0.891837934990709 -0.346370585050913 1 1 1 1 1 1 FALSE FALSE FALSE Tannerella forsythia (SP82) -0.811203942369265 -0.366322978602278 0.444880963766987 0.587156242592423 0.542170300684392 0.636994955927307 -1.3815810571776 -0.675660356422808 0.698405787404314 1 1 1 1 1 1 FALSE FALSE FALSE Rhizobium rhizogenes_Oral_Taxon_D34 (SP84) -0.363885951315179 -0.0327580753831832 0.331127875931996 0.483225888430982 0.446226271686305 0.554590870710296 -0.753034884982475 -0.0734113553184337 0.597066943254767 1 1 1 1 1 1 FALSE FALSE FALSE Actinomyces odontolyticus (SP86) 0.182339647168317 0.0602639680886282 -0.122075679079689 0.48861211954809 0.451198628264958 0.558813422753129 0.373178723722532 0.133564165122504 -0.218455166087912 1 1 1 1 1 1 FALSE FALSE FALSE Pseudomonas psychrophila (SP9) 0.309182416842232 0.124202969838922 -0.18497944700331 0.662732915206164 0.611939392947409 0.69807369876008 0.466526423764619 0.202966129114025 -0.264985555725522 1 1 1 1 1 1 FALSE FALSE FALSE Streptococcus australis (SP90) 0.131491809376605 0.175394011715856 0.043902202339251 0.430400903494374 0.397459958115081 0.513429735348041 0.305510068192327 0.441287249532373 0.085507712772987 1 1 1 1 1 1 FALSE FALSE FALSE Acinetobacter baumannii_nov_95.112% (SPN110) 1.1708015324149 -0.343641938732065 -1.51444347114697 0.623954868008254 0.576141170890567 0.666622921877033 1.87642022275145 -0.596454404049763 -2.27181427677689 1 1 1 1 1 1 FALSE FALSE FALSE Ralstonia pickettii_nov_83.065% (SPN128) -0.361358873139733 -0.702969308931665 -0.341610435791932 0.436524152003158 0.403112791344879 0.518180542452336 -0.827809575899752 -1.74385264874973 -0.659249832452662 1 1 1 1 1 1 FALSE FALSE FALSE Acinetobacter baumannii_nov_94.888% (SPN133) 0.193207111000578 0.305053044161234 0.111845933160656 0.608209920642607 0.561606125806768 0.653919102103319 0.317665175202082 0.543179695063003 0.171039403499463 1 1 1 1 1 1 FALSE FALSE FALSE Rhodocyclus sp._oral_taxon_028_nov_83.537% (SPN144) 0.279883563446097 0.0345851061957455 -0.245298457250351 0.562199069084426 0.519130945810736 0.617030276866087 0.497837116489545 0.0666211607588396 -0.397546873220271 1 1 1 1 1 1 FALSE FALSE FALSE Pseudomonas fluorescens_nov_96.495% (SPN153) 0.204934498186227 0.0927055218577738 -0.112228976328453 0.553057019257342 0.510691410431261 0.609744307729258 0.370548589115491 0.181529432381655 -0.184059080020614 1 1 1 1 1 1 FALSE FALSE FALSE Rhodocyclus sp._oral_taxon_028_nov_82.759% (SPN164) 0.131910603719793 0.701910631914309 0.570000028194516 0.53259816074847 0.491804691826454 0.593493514136976 0.247673787559493 1.42721418396308 0.960414923865473 1 1 1 1 1 1 FALSE FALSE FALSE Sphingomonas echinoides_nov_95.642% (SPN174) -0.373764347266216 -0.46155364826357 -0.0877893009973548 0.491035262711784 0.453435577270048 0.560714741598617 -0.761176183563824 -1.01790347162964 -0.156566778941935 1 1 1 1 1 1 FALSE FALSE FALSE Variovorax paradoxus_nov_86.680% (SPN184) -0.0220990309643732 0.0546079628502617 0.0767069938146349 0.429364077283853 0.396502783730041 0.512625707338233 -0.051469212571697 0.137724033956446 0.149635480071668 1 1 1 1 1 1 FALSE FALSE FALSE Pseudomonas stutzeri_nov_94.057% (SPN191) -0.240276703539892 -0.0432037342739525 0.197072969265939 0.438976142849429 0.405376404566719 0.520084191360282 -0.547357088656884 -0.106576835225845 0.378925128930557 1 1 1 1 1 1 FALSE FALSE FALSE Burkholderia cepacia_nov_95.688% (SPN193) -0.268516142409413 -0.00693673464994194 0.261579407759471 0.4846014976101 0.447496180366632 0.555668793774398 -0.554096806827154 -0.0155012153271536 0.470746982177432 1 1 1 1 1 1 FALSE FALSE FALSE Leptothrix sp._oral_taxon_025_nov_86.100% (SPN202) -0.173676821162916 -0.155313435885124 0.0183633852777918 0.439016831117345 0.405413966880042 0.520115786760439 -0.395604015274062 -0.383098384795115 0.0353063409056834 1 1 1 1 1 1 FALSE FALSE FALSE Cupriavidus gilardii_nov_82.992% (SPN213) -0.209637277923714 0.00267265058815056 0.212309928511864 0.431594410077419 0.398561775593224 0.514355404984118 -0.485727509506226 0.00670573735821142 0.412768926805425 1 1 1 1 1 1 FALSE FALSE FALSE Nitrosomonas sp._Is79A3_nov_83.367% (SPN224) 0.274468727431808 0.147309608625995 -0.127159118805813 0.42784517478341 0.395100566479089 0.511448041885226 0.641514135506503 0.372840793266218 -0.2486256831429 1 1 1 1 1 1 FALSE FALSE FALSE Acinetobacter baumannii_nov_93.661% (SPN233) -0.184200772857983 -0.110477396086948 0.0737233767710345 0.410423341273962 0.379017016566265 0.497953537563864 -0.448806766901268 -0.29148400007954 0.148052722211215 1 1 1 1 1 1 FALSE FALSE FALSE Pseudomonas fluorescens_nov_96.495% (SPN244) -0.212033564698101 0.00879070719938763 0.220824271897489 0.408576772827762 0.37731228272171 0.496524205946717 -0.518956482108897 0.0232982269646157 0.444740194441168 1 1 1 1 1 1 FALSE FALSE FALSE Acinetobacter sp._oral_taxon_408_nov_93.429% (SPN262) 0.0387927908779594 0.0989878163100503 0.0601950254320909 0.743416386757034 0.686423065212756 0.764177841252003 0.0521817807207387 0.14420817324862 0.0787709642737996 1 1 1 1 1 1 FALSE FALSE FALSE Burkholderia cepacia_nov_91.020% (SPN33) -0.0590009599321639 -0.120606150486266 -0.061605190554102 0.448972141408406 0.41460442188271 0.527852915972945 -0.131413409631788 -0.290894510817313 -0.116709008683888 1 1 1 1 1 1 FALSE FALSE FALSE Ottowia sp._oral_taxon_894_nov_84.568% (SPN91) 0.0573146974215544 -0.376138189043997 -0.433452886465552 0.630412944449089 0.582102985673474 0.671844930728779 0.0909161176435568 -0.646171207331668 -0.645168053877205 1 1 1 1 1 1 FALSE FALSE FALSE