K_Bacteria.P_Firmicutes.C_Erysipelotrichia.O_Erysipelotrichales.F_Erysipelotrichaceae.G_Bulleidia.S_extructa 2.79869437301 Early_RA_Periodontitis 2.57951135953 0.00780379291091 K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfovibrionales.F_Desulfovibrionaceae 3.63659483105 Early_RA_Gingivitis 3.45355967749 0.0112992506692 K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_nigrescens 4.01270134156 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Sneathia 2.48116566802 Early_RA_Periodontitis 2.20072944666 0.00236743861928 K_Bacteria.P_Firmicutes.C_Erysipelotrichi.O_Erysipelotrichales.F_Erysipelotrichaceae.G_Erysipelotrichaceae__G_1_ 1.80320832607 Early_RA_Periodontitis 2.12986009152 0.0106575386663 K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_sp__HMT_481 2.54951373309 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Rhodocyclales.F_Rhodocyclaceae.G_Propionivibrio.S_dicarboxylicus_nov_93_802 1.7976657921 - K_Bacteria.P_Proteobacteria 5.17981804766 - K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium.S_nucleatum_subsp__animalis 4.28442607248 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_anginosus 3.84259658517 Early_RA_Periodontitis 3.42253878061 0.000960418419316 K_Bacteria.P_Chloroflexi 2.61925703181 Early_RA_Periodontitis 2.44483998616 8.09339173119e-05 K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_sp__HMT_423 4.69071772011 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Burkholderiales.F_Burkholderiaceae.G_Lautropia.S_mirabilis 4.57762107506 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_268 2.72419243232 - K_Bacteria.P_Gracilibacteria__GN02_.C_Gracilibacteria__GN02___C_1_ 2.8589575511 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales 3.98359823391 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_263 2.03933910867 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_262 2.58261742574 Early_RA_Periodontitis 2.31081472514 0.000451624688105 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Filifactor 3.71150132019 Early_RA_Periodontitis 3.45525345305 1.95206173838e-06 K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Micrococcales 4.89549167676 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Mogibacterium.S_diversum 3.14763656296 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Rhodocyclales.F_Rhodocyclaceae 1.7976657921 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales 4.71145332591 - K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Coriobacteriales.F_Coriobacteriaceae.G_Slackia.S_exigua 2.6141100851 Early_RA_Gingivitis 2.42298967458 0.0226821863819 K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Bifidobacteriales.F_Bifidobacteriaceae.G_Bifidobacterium.S_longum 1.45612448169 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Anaeroglobus 3.05519161238 Early_RA_Periodontitis 2.72783437224 0.0282132883472 K_Bacteria.P_Firmicutes.C_Mollicutes.O_Mycoplasmatales.F_Mycoplasmataceae 1.87669045931 - K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_1_.O_Bacteroidetes__O_1_.F_Bacteroidetes__F_1_.G_Bacteroidetes__G_5_.S_bacterium_HMT_507 2.09797341604 - K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_1_.O_Bacteroidetes__O_1_.F_Bacteroidetes__F_1_.G_Bacteroidetes__G_5_.S_bacterium_HMT_505 0.0 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_naeslundii 4.3819060694 Early_RA_Healthy 4.09177386265 0.00500613614076 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_4_.S_multispecies_spp40_2 2.44927072116 Early_RA_Gingivitis 2.27153280088 0.00311287525526 K_Bacteria.P_Firmicutes.C_Erysipelotrichia.O_Erysipelotrichales.F_Erysipelotrichaceae.G_Solobacterium 2.85347698367 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Catonella 3.31522937974 Early_RA_Gingivitis 2.98411030223 0.0449786161549 K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Bacteroidales__F_2_ 4.08785796994 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_.G_Saccharibacteria__TM7___G_1_.S_bacterium_HMT_957 2.93981451771 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_sp__HMT_149 2.3656294972 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Rhodocyclales 1.7976657921 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae 5.38549050149 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae.G_Schaalia.S_sp__HMT_178 3.39592371649 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_sp__HMT_146 2.11234825248 0.0138994786744 K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales.F_Pasteurellaceae.G_Aggregatibacter.S_sp__HMT_513 3.52567911477 - K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Eggerthellales.F_Eggerthellaceae 2.48666698247 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia 4.62241923296 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_448 4.90421863716 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Bergeyella 3.40311513364 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Propionibacteriales.F_Propionibacteriaceae 4.50412078268 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae 4.62241923296 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Anaeroglobus.S_geminatus 3.05519161238 Early_RA_Periodontitis 2.72843537569 0.0282132883472 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_1_ 2.71059818529 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Porphyromonas.S_gulae 0.0 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_mitis 3.45550672266 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_veroralis 3.20206584628 Early_RA_Periodontitis 3.00370791597 0.00279533276451 K_Bacteria.P_Firmicutes.C_Erysipelotrichi.O_Erysipelotrichales.F_Erysipelotrichaceae 2.89833767768 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_dianae 2.5395501344 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcus 2.99226045313 Early_RA_Periodontitis 2.55491961928 0.0457051330524 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Lachnoanaerobaculum 3.64575105979 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Eubacteriaceae 2.81361034536 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Alloprevotella.S_tannerae 3.80086819608 Early_RA_Gingivitis 3.42541069823 0.00650809982416 K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_multispecies_spp25_2 2.32069371205 - K_Bacteria.P_Synergistetes 3.94295778169 Early_RA_Periodontitis 3.66982139615 0.00652027742021 K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfovibrionales.F_Desulfomicrobiaceae 1.96364981176 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Porphyromonas.S_gingivalis 3.92670240673 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_medium 0.970648694144 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales.F_Pasteurellaceae.G_Haemophilus.S_parainfluenzae 4.43649792643 Early_RA_Healthy 4.05291689739 0.0059188947144 K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Veillonellaceae__G_1_.S_bacterium_HMT_918_nov_96_154 2.71635407931 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae 4.24863574103 - K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_2_.O_Bacteroidetes__O_2_.F_Bacteroidetes__F_2_.G_Bacteroidetes__G_6_ 0.873653393651 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Oscillospiraceae.G_Caproiciproducens 3.02098616038 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_sp__HMT_919_nov_97_426 2.13961348926 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales 5.25050736498 - K_Bacteria.P_Synergistetes.C_Synergistia 3.94295778169 Early_RA_Periodontitis 3.67046098832 0.00652027742021 K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_2_.O_Bacteroidetes__O_2_.F_Bacteroidetes__F_2_ 0.873653393651 - K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Coriobacteriales.F_Atopobiaceae.G_Lancefieldella.S_rimae 3.51600739927 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus 5.22417082505 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_oralis_subsp__dentisani_clade_058 2.82210471015 - K_Bacteria.P_Firmicutes.C_Tissierellia.O_Tissierellales.F_Tissierellaceae.G_Soehngenia 1.96439974487 - K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfobacterales.F_Desulfobulbaceae.G_Desulfobulbus.S_sp__HMT_041 3.24548287607 Early_RA_Periodontitis 2.99108327949 0.00398499132812 K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Lachnospiraceae__G_14_.S_bacterium_MOT_182_nov_92_918 2.92619626605 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Porphyromonas.S_pasteri 3.30253789126 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_2_ 3.80946171222 Early_RA_Gingivitis 3.49130193787 0.0373099367635 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptoniphilaceae.G_Parvimonas.S_sp__HMT_110 3.25588315027 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Porphyromonas.S_sp__HMT_284 1.96921852253 - K_Bacteria.P_Firmicutes.C_Mollicutes.O_Mycoplasmatales 1.87669045931 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Cardiobacteriales.F_Cardiobacteriaceae.G_Cardiobacterium.S_hominis 3.68547614049 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Oribacterium.S_sinus 2.73783733145 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga 4.55650792997 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Peptostreptococcaceae.G_Peptoanaerobacter.S__Eubacterium_yurii 2.1020780306 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Negativicutes.F_Veillonellaceae.G_Veillonella.S_parvula 4.07780002212 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Tannerella.S_sp__HMT_286 3.18850811941 Early_RA_Gingivitis 2.78536060548 0.0257721802079 K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Veillonellaceae__G_1_.S_bacterium_HMT_145 1.69604247759 Early_RA_Periodontitis 2.17114339013 0.00236743861928 K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Kingella 3.95895940093 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Carnobacteriaceae 4.13129526337 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Muribaculaceae 3.28425424389 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Clostridiales__F_1_.G_Clostridiales__F_1__G_1_.S_bacterium_HMT_093 1.99100589657 0.00330022469708 K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfovibrionales.F_Desulfomicrobiaceae.G_Desulfomicrobium.S_orale 1.96364981176 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Lachnospiraceae__G_14_ 3.36099703434 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Megasphaera.S_sp__HMT_123 2.77532651444 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales 5.0101563286 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_3_ 0.843690170273 - K_Bacteria.P_Synergistetes.C_Synergistia.O_Synergistales.F_Synergistaceae.G_Fretibacterium 3.94295778169 Early_RA_Periodontitis 3.67008785881 0.00652027742021 K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_242_nov_97_769 1.36387525766 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_sp__HMT_292 3.03125697521 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae.G_Schaalia 4.08631182256 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_sputigena 3.70093570235 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Lactobacillaceae.G_Lactobacillus 3.54814564357 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Bacteroidaceae.G_Bacteroidaceae__G_1_ 2.03419443882 Early_RA_Periodontitis 2.18266212466 0.0341550191025 K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas 4.24863574103 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales 4.62241923296 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales 4.58599059847 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_5_ 2.63788037681 Early_RA_Periodontitis 2.36456531353 0.00236743861928 K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium.S_hwasookii 2.82701812789 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Lachnospiraceae__G_14_.S_bacterium_MOT_183_nov_94_635 3.16209132513 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Aerococcaceae 3.67748463172 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_israelii_nov_97_211 2.90391787299 - K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_1_.O_Bacteroidetes__O_1_.F_Bacteroidetes__F_1_.G_Bacteroidetes__G_5_ 2.69851321772 - K_Bacteria.P_Firmicutes.C_Tissierellia.O_Tissierellales 1.96439974487 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_sp__HMT_902 3.96818143445 Early_RA_Periodontitis 3.60324671847 0.00567216852061 K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_sanguinis_nov_97_782 3.62329701707 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_sobrinus 4.13742506146 - K_Bacteria.P_Proteobacteria.C_Epsilonproteobacteria.O_Campylobacterales.F_Campylobacteraceae.G_Campylobacter.S_showae 3.05831405758 - K_Bacteria.P_Firmicutes.C_Erysipelotrichia.O_Erysipelotrichales.F_Erysipelotrichaceae 3.12797889785 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Bacillales.F_Gemellaceae 3.75404659553 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Tannerella.S_multispecies_spp22_2 2.8450586146 - K_Bacteria.P_Proteobacteria.C_Epsilonproteobacteria.O_Campylobacterales.F_Helicobacteraceae 1.33992373088 Early_RA_Periodontitis 2.40304978 0.00236743861928 K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Burkholderiales.F_Burkholderiaceae.G_Lautropia.S_dentalis 1.89266046115 - K_Bacteria.P_Proteobacteria.C_Epsilonproteobacteria.O_Campylobacterales.F_Campylobacteraceae.G_Campylobacter.S_rectus_nov_97_826 2.98465379399 Early_RA_Gingivitis 2.81935557961 0.0112992506692 K_Bacteria.P_Firmicutes.C_Erysipelotrichi.O_Erysipelotrichales.F_Erysipelotrichaceae.G_Erysipelotrichaceae__G_1_.S_bacterium_HMT_905 1.80320832607 Early_RA_Periodontitis 2.1624807674 0.0106575386663 K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Lachnospiraceae__G_2_ 3.2623593894 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_169_nov_97_951 3.88423054244 Early_RA_Gingivitis 3.47908793367 0.0112992506692 K_Bacteria.P_Proteobacteria.C_Epsilonproteobacteria.O_Campylobacterales.F_Campylobacteraceae.G_Campylobacter.S_concisus 2.98903661376 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_2_.S_bacterium_HMT_091 2.42581165458 Early_RA_Periodontitis 2.24294297327 0.000733023207028 K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_1_.O_Bacteroidetes__O_1_.F_Bacteroidetes__F_1_ 2.7698195462 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Muribaculaceae.G_Muribaculaceae__G_1_.S_bacterium_MOT_129_nov_85_685 2.86100836996 - K_Bacteria.P_Firmicutes.C_Mollicutes.O_Mycoplasmatales.F_Mycoplasmataceae.G_Mycoplasma 1.87669045931 - K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Coriobacteriales.F_Atopobiaceae.G_Olsenella.S_sp__HMT_807 3.68211611027 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_.G_Saccharibacteria__TM7___G_6_ 1.85157902466 - K_Bacteria.P_Firmicutes.C_Erysipelotrichia 3.12797889785 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_johnsonii 4.59955975087 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Propionibacteriales 4.50412078268 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_237 3.17189977481 Early_RA_Gingivitis 2.95584866 0.00702799965006 K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_234 2.61266467553 Early_RA_Gingivitis 2.42668096303 0.0145953869141 K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales 3.71256929905 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_230 2.26476953787 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_231 3.19024685908 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_238 1.70285529044 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_237_nov_97_566 1.58602482276 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_171_nov_96_421 3.08854951132 - K_Bacteria.P_Proteobacteria.C_Epsilonproteobacteria.O_Campylobacterales.F_Campylobacteraceae.G_Campylobacter.S_rectus 2.18708562341 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae.G_Schaalia.S_odontolytica 3.30466786039 - K_Bacteria.P_Tenericutes.C_Mollicutes.O_Anaeroplasmatales.F_Anaeroplasmataceae.G_Anaeroplasma 3.31335588538 - K_Bacteria.P_Chloroflexi.C_Anaerolineae.O_Anaerolineales.F_Anaerolineaceae.G_Anaerolineae__G_1_.S_bacterium_HMT_439 2.61925703181 Early_RA_Periodontitis 2.44682180777 8.09339173119e-05 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Lachnoanaerobaculum.S_multispecies_spp41_2 2.84752147515 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae 4.57162733481 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_6_.S__Eubacterium__nodatum 2.81429236125 Early_RA_Gingivitis 2.60580525376 0.000622617728661 K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Eikenella 3.62822287326 - K_Bacteria.P_Firmicutes.C_Erysipelotrichia.O_Erysipelotrichales 3.12797889785 - K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria 3.68228847628 Early_RA_Gingivitis 3.47601199574 0.000594983189264 K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Neisseria 4.37923921226 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_sputigena 4.08970033946 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_pallens 2.78997905607 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces 5.38549050149 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales 4.86409031587 - K_Bacteria.P_Firmicutes.C_Tissierellia 1.96439974487 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Porphyromonas.S_catoniae 2.88583515571 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_wadei 4.14158652005 - K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium.S_multispecies_spp49_2 0.0 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_periodonticum 2.95282596946 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Corynebacteriales.F_Corynebacteriaceae.G_Corynebacterium.S_matruchotii_nov_97_755 2.93472360034 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_endodontalis 3.7001561339 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_oralis 4.62158389911 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptoniphilaceae.G_Peptoniphilaceae__G_1_ 0.396532138931 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Neisseria.S_bacilliformis 3.63505943954 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Rhodocyclales.F_Rhodocyclaceae.G_Propionivibrio 1.7976657921 - K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium.S_multispecies_sppn6_3_nov_97_845 2.67112296021 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_noxia_nov_96_634 2.86870068764 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_denticola 3.78071894871 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Bacteroidales__F_2_.G_Bacteroidales__G_2_ 4.08785796994 - K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_1_.O_Bacteroidetes__O_1_.F_Bacteroidetes__F_1_.G_Bacteroidetes__G_3_.S_bacterium_HMT_280 1.62798453586 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_sp__HMT_317 4.03951350522 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_sp__HMT_314 3.09748066209 - K_Bacteria.P_Actinobacteria.C_Coriobacteriia 3.93695486613 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Neisseria.S_perflava 2.8442293087 Early_RA_Healthy 2.57687949794 0.00184541827271 K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Tannerella.S_serpentiformis 2.04734136364 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Porphyromonas 4.15021273416 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_9_ 4.02319011168 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria 5.01141491401 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_.G_Saccharibacteria__TM7___G_3_.S_bacterium_HMT_351 2.62169650278 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_169_nov_97_988 0.0 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_525 3.6341009037 - K_Bacteria.P_Proteobacteria.C_Epsilonproteobacteria.O_Campylobacterales.F_Campylobacteraceae.G_Campylobacter 4.00629605056 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_oralis 3.27956413296 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_intermedia 3.83992805256 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Bacillales.F_Gemellaceae.G_Gemella.S_sanguinis 2.74261092346 Early_RA_Gingivitis 2.42928174457 0.0310823714947 K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales.F_Pasteurellaceae 4.47273293862 - K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium.S_nucleatum_subsp__vincentii 4.28222204651 Early_RA_Periodontitis 4.01591153434 0.00302726332531 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Ruminococcaceae.G_Ruminococcaceae__G_1_ 2.92340461945 - K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_1_.O_Bacteroidetes__O_1_.F_Bacteroidetes__F_1_.G_Bacteroidetes__G_3_.S_bacterium_HMT_365 2.10549312359 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales.F_Pasteurellaceae.G_Aggregatibacter.S_sp__HMT_458 3.19347122954 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae 5.22417082505 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales.F_Pasteurellaceae.G_Aggregatibacter.S_segnis 2.93084449244 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Corynebacteriales.F_Corynebacteriaceae.G_Corynebacterium 4.68957737768 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_gerencseriae 4.45547695506 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_infelix 2.8905698804 - K_Bacteria.P_Proteobacteria.C_Epsilonproteobacteria.O_Campylobacterales.F_Campylobacteraceae.G_Campylobacter.S_gracilis 3.90075341425 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_sp__HMT_498 4.00897828271 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Stomatobaculum.S_longum 3.15897907831 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_dentalis 3.74058787451 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Bacillales.F_Gemellaceae.G_Gemella.S_morbillorum 3.61945701683 - K_Bacteria.P_Firmicutes.C_Erysipelotrichi 2.89833767768 - K_Bacteria.P_Proteobacteria.C_Epsilonproteobacteria.O_Campylobacterales.F_Campylobacteraceae 4.00629605056 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptoniphilaceae 4.57613143325 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Lachnospiraceae__G_8_.S_bacterium_HMT_500 2.61636665658 Early_RA_Gingivitis 2.44215396457 0.00218665212141 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Lachnoanaerobaculum.S_saburreum 3.43108782398 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Corynebacteriales.F_Corynebacteriaceae.G_Corynebacterium.S_durum 3.81292842388 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Sneathia.S_sanguinegens_nov_90_792 2.48116566802 Early_RA_Periodontitis 2.19655272585 0.00236743861928 K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_sp__HMT_292_nov_97_755 2.62436044279 Early_RA_Gingivitis 2.36471958346 0.000113445225906 K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_israelii_nov_96_825 2.97688672822 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_cristatus 3.47153477428 Early_RA_Periodontitis 3.19652962608 0.00289970001706 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Johnsonella 3.19963527031 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Tannerella 3.78231840427 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema 4.04475637543 - K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium.S_nucleatum 4.84176899626 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_maculosa 3.22184214551 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Burkholderiales.F_Comamonadaceae.G_Ottowia 2.9898424532 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptococcaceae.G_Peptococcus.S_sp__HMT_168 1.82718434294 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Kingella.S_denitrificans 3.10386272835 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Veillonellaceae__G_1_.S_bacterium_HMT_155 3.31071852435 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Corynebacteriales.F_Corynebacteriaceae.G_Corynebacterium.S_matruchotii_nov_97_764 0.0 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Micrococcales.F_Micrococcaceae.G_Rothia 4.89549167676 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptococcaceae.G_Peptococcus.S_sp__HMT_167 2.82151699521 Early_RA_Periodontitis 2.56219136007 0.0151600892633 K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Veillonellaceae__G_1_.S_bacterium_HMT_150 2.63272528086 Early_RA_Gingivitis 2.34774789184 0.0344831696795 K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae.G_Schaalia.S_georgiae 3.21330908448 Early_RA_Periodontitis 2.96031518734 0.0141053266315 K_Bacteria.P_Synergistetes.C_Synergistia.O_Synergistales.F_Synergistaceae.G_Fretibacterium.S_fastidiosum 3.47889807714 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales.F_Pasteurellaceae.G_Haemophilus 4.43862718916 - K_Bacteria.P_Synergistetes.C_Synergistia.O_Synergistales.F_Synergistaceae.G_Fretibacterium.S_sp__HMT_359 2.72210442334 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_veroralis_nov_97_342 3.4376663671 Early_RA_Periodontitis 3.16093602418 0.0277686579715 K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_170 4.39659086524 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_171 4.21099210265 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_175 4.01822061138 - K_Bacteria.P_Fusobacteria.C_Fusobacteria 5.0223460927 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Burkholderiales.F_Comamonadaceae 2.9898424532 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_constellatus 3.78532321557 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Ruminococcaceae.G_Ruminococcaceae__G_1_.S_bacterium_HMT_075 2.92340461945 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_2_.G_Saccharibacteria__TM7___G_5_ 3.80946171222 Early_RA_Gingivitis 3.55833561361 0.0373099367635 K_Bacteria 6.0 - K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Eggerthellales 2.48666698247 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Propionibacteriales.F_Propionibacteriaceae.G_Propionibacterium.S_acidifaciens 3.66898487229 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_melaninogenica 3.7417366831 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Corynebacteriales.F_Corynebacteriaceae.G_Corynebacterium.S_matruchotii 4.61788296072 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_sp__HMT_138 2.35253073994 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_sp__HMT_134 2.96030980035 Early_RA_Gingivitis 2.67872689829 0.0200854134906 K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Lactobacillaceae.G_Lactobacillus.S_johnsonii 3.54814564357 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptococcaceae 2.86342796075 Early_RA_Periodontitis 2.60220709819 0.0202109505307 K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_sp__HMT_137 2.77073942056 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales 4.57162733481 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_sp__HMT_133 2.68011948378 Early_RA_Healthy 2.36835444418 0.0483626294431 K_Bacteria.P_Fusobacteria.C_Fusobacteriia 4.62241923296 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Corynebacteriales.F_Corynebacteriaceae.G_Corynebacterium.S_durum_nov_97_077 3.29182543631 - K_Bacteria.P_Spirochaetes 4.04475637543 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae 3.60612754386 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Veillonellaceae__G_1_ 3.5237446203 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Bacillales.F_Staphylococcaceae 3.03405243323 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_micans 1.96273276503 - K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Coriobacteriales.F_Coriobacteriaceae.G_Slackia 2.6141100851 Early_RA_Gingivitis 2.43093990194 0.0226821863819 K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Eggerthellales.F_Eggerthellaceae.G_Cryptobacterium 2.48666698247 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_leadbetteri 3.77513154014 - K_Bacteria.P_Proteobacteria.C_Alphaproteobacteria.O_Sphingomonadales 3.46588064161 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_maltophilum_nov_97_769 1.40430425508 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Kingella.S_oralis 3.93399544502 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales.F_Pasteurellaceae.G_Aggregatibacter 3.65784416003 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Ruminococcaceae.G_Ruminococcaceae__G_2_.S_bacterium_HMT_085 0.987704036157 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Mogibacterium.S_timidum 3.07266588429 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Lacrimispora 2.15015870804 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_9_.S__Eubacterium__brachy 4.02319011168 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Alloprevotella.S_rava 2.28836589341 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Cardiobacteriales.F_Cardiobacteriaceae.G_Cardiobacterium 3.76802575709 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_parasanguinis_clade_411 3.1962135957 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_timonensis_nov_97_769 0.0 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_sp__HMT_892 2.07213900793 - K_Bacteria.P_Firmicutes.C_Negativicutes 4.42354182456 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_maltophilum 3.09552723768 - K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Eggerthellales.F_Eggerthellaceae.G_Cryptobacterium.S_curtum 2.48666698247 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_sp__HMT_392 3.32418409738 - K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfovibrionales.F_Desulfovibrionaceae.G_Desulfovibrio 0.0 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Porphyromonas.S_endodontalis 4.04165825091 Early_RA_Gingivitis 3.80648315476 0.0112921945088 K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_sp__HMT_864 3.51396240509 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales.F_Pasteurellaceae.G_Aggregatibacter.S_aphrophilus 3.07011886986 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Kingella.S_sp__HMT_012 2.44887897684 - K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_1_.O_Bacteroidetes__O_1_.F_Bacteroidetes__F_1_.G_Bacteroidetes__G_5_.S_bacterium_HMT_511 2.57306656643 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales.F_Pasteurellaceae.G_Haemophilus.S_sp__HMT_036 2.84589598915 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_sp__HMT_136 2.39533473212 - K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfovibrionales.F_Desulfovibrionaceae.G_Desulfovibrio.S_legallii_nov_94_343 0.0 - K_Bacteria.P_Actinobacteria 5.58716138474 - K_Bacteria.P_Synergistetes.C_Synergistia.O_Synergistales.F_Synergistaceae 3.94295778169 Early_RA_Periodontitis 3.67031780455 0.00652027742021 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_4_ 2.8294093685 Early_RA_Gingivitis 2.5618971233 0.00734679894489 K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales.F_Pasteurellaceae.G_Aggregatibacter.S_actinomycetemcomitans_nov_97_947 0.0 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Corynebacteriales 4.68957737768 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Johnsonella.S_sp__HMT_166 2.12782644506 - K_Bacteria.P_Proteobacteria.C_Epsilonproteobacteria.O_Campylobacterales.F_Helicobacteraceae.G_Wolinella.S_succinogenes_nov_97_550 1.33992373088 Early_RA_Periodontitis 2.39635299324 0.00236743861928 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Stomatobaculum.S_sp__HMT_373 1.66331032997 Early_RA_Gingivitis 2.23899124795 0.0112992506692 K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales 5.0223460927 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales 4.04475637543 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Neisseria.S_sicca 3.61059587815 - K_Bacteria.P_Tenericutes 3.31335588538 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_loescheii 3.03848412681 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Neisseria.S_sp__HMT_020 3.05365740137 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Lachnospiraceae__G_2_.S_bacterium_HMT_096 3.2623593894 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae 4.30414780539 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Butyrivibrio.S_sp__HMT_080 2.86575253523 Early_RA_Gingivitis 2.61201099412 0.0343661364743 K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_sp__HMT_326 3.04470362302 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_sp__HMT_323 3.01509077856 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_sp__HMT_526 0.0 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_multispecies_spp53_2 3.03739553273 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Bergeyella.S_sp__HMT_322 3.35439506738 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Lachnoanaerobaculum.S_gingivalis 2.07949749122 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Oribacterium 3.73386504117 - K_Bacteria.P_Firmicutes.C_Bacilli 5.26652273959 - K_Bacteria.P_Chloroflexi.C_Anaerolineae.O_Anaerolineales.F_Anaerolineaceae.G_Anaerolineae__G_1_ 2.61925703181 Early_RA_Periodontitis 2.45054937122 8.09339173119e-05 K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Lachnospiraceae__G_8_ 2.61636665658 Early_RA_Gingivitis 2.43270354328 0.00218665212141 K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Muribaculaceae.G_Muribaculaceae__G_1_.S_bacterium_MOT_129_nov_88_105 3.07849231417 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Oscillospiraceae 3.02098616038 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_dentalis_nov_97_787 2.43391449427 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Alloprevotella.S_sp__HMT_473 2.13538261835 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_7_.S__Eubacterium__yurii_subsps__yurii__margaretiae 2.87524125297 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Negativicutes.F_Veillonellaceae.G_Veillonella 4.6132068738 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Pseudoleptotrichia 2.92638188396 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_414 3.63731903862 - K_Bacteria.P_Gracilibacteria__GN02_.C_Gracilibacteria__GN02___C_1_.O_Gracilibacteria__GN02___O_1_.F_Gracilibacteria__GN02___F_1_ 2.8589575511 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_socranskii 3.41927324521 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae.G_Peptidiphaga.S_gingivicola_nov_96_920 1.21607607447 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Burkholderiales.F_Comamonadaceae.G_Brachymonas.S_denitrificans_nov_92_418 2.05253188963 - K_Bacteria.P_Chloroflexi.C_Anaerolineae 2.61925703181 Early_RA_Periodontitis 2.45388825453 8.09339173119e-05 K_Bacteria.P_Tenericutes.C_Mollicutes.O_Anaeroplasmatales.F_Anaeroplasmataceae 3.31335588538 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Tannerella.S_forsythia_nov_97_516 0.0 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_saccharolytica 2.84358839378 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Micrococcales.F_Micrococcaceae.G_Rothia.S_dentocariosa 4.86927821208 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_multispecies_spp55_2 2.49767801317 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Burkholderiales.F_Burkholderiaceae.G_Lautropia 4.57851721442 - K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfobacterales.F_Desulfobulbaceae 3.24548287607 Early_RA_Periodontitis 2.97675238935 0.00398499132812 K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Cardiobacteriales 3.76802575709 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales 4.47273293862 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Johnsonella.S_ignava 3.19963527031 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_hofstadii 3.25608217089 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Bifidobacteriales 3.13861716071 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_buccae 2.28752156828 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Cardiobacteriales.F_Cardiobacteriaceae.G_Cardiobacterium.S_hominis_nov_97_510 2.47238912502 - K_Bacteria.P_Bacteroidetes 5.10630915095 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae.G_Peptidiphaga.S_gingivicola 3.87352671223 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Megasphaera.S_micronuciformis 2.62881873626 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_247 1.88567179369 Early_RA_Periodontitis 2.1339928258 0.00236743861928 K_Bacteria.P_Actinobacteria.C_Actinomycetia 5.54985473207 - K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Coriobacteriales.F_Atopobiaceae 3.91525782245 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_249 0.0 - K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfovibrionales.F_Desulfovibrionaceae.G_Bilophila 3.63659483105 Early_RA_Gingivitis 3.51683370023 0.0112992506692 K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_sp__HMT_317_nov_97_536 0.0 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Bacillales.F_Staphylococcaceae.G_Staphylococcus.S_multispecies_spp50_2 3.03405243323 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_.G_Saccharibacteria__TM7___G_3_ 2.62169650278 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_multispecies_spp31_2 2.64719080418 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Kingella.S_oralis_nov_97_536 2.38801768503 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_ 4.41336703958 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_trevisanii 2.91226686677 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Negativicutes.F_Veillonellaceae.G_Veillonella.S_multispecies_spp21_2 4.56012375038 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_israelii_nov_94_882 3.8425347536 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_oris 3.66441154697 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Shuttleworthia 2.51278706294 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_ 4.33767641079 - K_Bacteria.P_Chloroflexi.C_Anaerolineae.O_Anaerolineales.F_Anaerolineaceae 2.61925703181 Early_RA_Periodontitis 2.45238577112 8.09339173119e-05 K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Megasphaera 3.00925153478 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_pleuritidis 4.00219771466 - K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Coriobacteriales.F_Coriobacteriaceae 2.6141100851 Early_RA_Gingivitis 2.41813099837 0.0226821863819 K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_1_.O_Bacteroidetes__O_1_.F_Bacteroidetes__F_1_.G_Bacteroidetes__G_3_ 2.23033505933 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Lactobacillaceae 3.54814564357 - K_Bacteria.P_Firmicutes.C_Tissierellia.O_Tissierellales.F_Tissierellaceae.G_Soehngenia.S_saccharolytica_nov_84_855 1.96439974487 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Ruminococcaceae.G_Ruminococcaceae__G_2_ 0.987704036157 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_haemolytica 2.04827451801 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_naeslundii_nov_96_545 3.51156589065 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Peptostreptococcaceae 2.1020780306 - K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_1_ 2.7698195462 - K_Bacteria.P_Tenericutes.C_Mollicutes 3.31335588538 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae 4.58599059847 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_2_.G_Saccharibacteria__TM7___G_5_.S_bacterium_HMT_356 3.80946171222 Early_RA_Gingivitis 3.51423643021 0.0373099367635 K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Bergeyella.S_sp__HMT_900 2.42890636556 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_downii 2.74960427553 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_sanguinis 4.48788222374 - K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium.S_multispecies_spp36_2 3.8484690179 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_salivarius 3.54278614627 - K_Bacteria.P_Gracilibacteria__GN02_.C_Gracilibacteria__GN02___C_1_.O_Gracilibacteria__GN02___O_1_ 2.8589575511 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Eubacteriaceae.G_Pseudoramibacter.S_alactolyticus 2.81361034536 - K_Bacteria.P_Proteobacteria.C_Alphaproteobacteria 3.46588064161 - K_Bacteria.P_Firmicutes.C_Erysipelotrichia.O_Erysipelotrichales.F_Erysipelotrichaceae.G_Solobacterium.S_moorei 2.85347698367 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_histicola 3.20215192921 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Neisseria.S_elongata 3.62829300343 - K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium.S_sp__HMT_204 2.82999572692 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Eikenella.S_corrodens 3.62822287326 - K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium.S_sp__HMT_203 3.26503893256 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_7_ 2.87524125297 - K_Bacteria.P_Actinobacteria.C_Actinobacteria 4.92818224755 Early_RA_Healthy 4.48867758207 0.0480377943422 K_Bacteria.P_Proteobacteria.C_Alphaproteobacteria.O_Sphingomonadales.F_Sphingomonadaceae.G_Sphingomonas.S_hankookensis_nov_97_685 3.46588064161 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptococcaceae.G_Peptococcus 2.86342796075 Early_RA_Periodontitis 2.60232201922 0.0202109505307 K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium.S_periodonticum 2.97660547692 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_buccalis 3.94755136318 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia 5.0101563286 - K_Bacteria.P_Fusobacteria 5.13928742564 - K_Bacteria.P_Tenericutes.C_Mollicutes.O_Anaeroplasmatales.F_Anaeroplasmataceae.G_Anaeroplasma.S_abactoclasticum_nov_86_538 3.31335588538 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Pseudoleptotrichia.S_goodfellowii 2.92638188396 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Aerococcaceae.G_Abiotrophia.S_defectiva 3.67748463172 - K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_1_.O_Bacteroidetes__O_1_ 2.7698195462 - K_Bacteria.P_Firmicutes.C_Erysipelotrichi.O_Erysipelotrichales.F_Erysipelotrichaceae.G_Dubosiella 2.89833767768 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_sp__HMT_066 2.61697562736 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_sp__HMT_064 4.29756591929 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Bifidobacteriales.F_Bifidobacteriaceae.G_Scardovia.S_wiggsiae 3.11378117288 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Oribacterium.S_sp__HMT_078 3.68766393388 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_australis 2.82054712047 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Bacillales 3.82529245033 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae 4.04475637543 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales.F_Pasteurellaceae.G_Aggregatibacter.S_actinomycetemcomitans 1.56072019293 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Clostridiales__F_1_.G_Clostridiales__F_1__G_1_.S_bacterium_HMT_093_nov_84_086 2.69970391836 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Negativicutes.F_Veillonellaceae 4.6132068738 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Bifidobacteriales.F_Bifidobacteriaceae.G_Bifidobacterium 2.78985594229 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Stomatobaculum.S_sp__HMT_097 1.98239448541 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Clostridiales__F_1_ 2.69970391836 Early_RA_Healthy 2.50619823268 0.0207775147451 K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_hofstadii_nov_96_970 2.88346270255 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_sp__HMT_225 3.82820513255 - K_Bacteria.P_Tenericutes.C_Mollicutes.O_Anaeroplasmatales 3.31335588538 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_sp__HMT_223 2.46181023552 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Neisseria.S_subflava 2.96746514269 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Negativicutes 4.6132068738 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Negativicutes.F_Veillonellaceae.G_Veillonella.S_dispar 3.13250803307 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Clostridiales__F_1_.G_Clostridiales__F_1__G_1_ 2.69970391836 Early_RA_Healthy 2.50560372698 0.0207775147451 K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Propionibacteriales.F_Propionibacteriaceae.G_Arachnia.S_rubra 4.39158614823 Early_RA_Healthy 3.99672296499 0.0258344113059 K_Bacteria.P_Proteobacteria.C_Alphaproteobacteria.O_Sphingomonadales.F_Sphingomonadaceae 3.46588064161 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Filifactor.S_alocis 3.71150132019 Early_RA_Periodontitis 3.45526355853 1.95206173838e-06 K_Bacteria.P_Proteobacteria.C_Epsilonproteobacteria.O_Campylobacterales.F_Helicobacteraceae.G_Wolinella 1.33992373088 Early_RA_Periodontitis 2.41819836163 0.00236743861928 K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Coriobacteriales.F_Atopobiaceae.G_Olsenella 3.71743005543 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Ruminococcaceae 2.9284116221 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_marshii 2.29577272321 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Mogibacterium 3.39950372508 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Micrococcales.F_Micrococcaceae.G_Rothia.S_aeria 4.51895196556 Early_RA_Healthy 4.20325625908 0.0378248465596 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_4_.S_bacterium_HMT_369 2.59527430192 Early_RA_Gingivitis 2.35328180143 0.00920814848913 K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Micrococcales.F_Micrococcaceae.G_Rothia.S_mucilaginosa 3.44690129438 - K_Bacteria.P_Firmicutes.C_Clostridia 5.0722433971 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae.G_Schaalia.S_sp__HMT_877 2.75639976249 Early_RA_Periodontitis 2.55949784073 7.59895705424e-05 K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Roseburia 3.15147733013 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_sp__HMT_335 3.00505535147 - K_Bacteria.P_Firmicutes 5.50330141644 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae.G_Peptidiphaga 4.59394364363 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Neisseria.S_sp__HMT_018 2.06991976331 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_baroniae 1.94417082381 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Propionibacteriales.F_Propionibacteriaceae.G_Arachnia 4.50412078268 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Neisseria.S_flavescens 3.42626014314 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Carnobacteriaceae.G_Granulicatella.S_adiacens 4.13129526337 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Veillonellaceae__G_1_.S_bacterium_HMT_129 2.36113263162 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Propionibacteriales.F_Propionibacteriaceae 3.66898487229 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_cristatus_clade_578 4.05053282179 - K_Bacteria.P_Synergistetes.C_Synergistia.O_Synergistales.F_Synergistaceae.G_Fretibacterium.S_sp__HMT_362 2.81115036761 Early_RA_Gingivitis 2.72391454345 0.0449445226523 K_Bacteria.P_Synergistetes.C_Synergistia.O_Synergistales.F_Synergistaceae.G_Fretibacterium.S_sp__HMT_360 3.73424644478 Early_RA_Periodontitis 3.47012070874 0.000818885609708 K_Bacteria.P_Synergistetes.C_Synergistia.O_Synergistales.F_Synergistaceae.G_Fretibacterium.S_sp__HMT_361 1.66478764018 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_oris 4.08445882989 - K_Bacteria.P_Proteobacteria.C_Epsilonproteobacteria 4.00629605056 - K_Bacteria.P_Firmicutes.C_Erysipelotrichi.O_Erysipelotrichales.F_Erysipelotrichaceae.G_Dubosiella.S_newyorkensis 2.89833767768 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Bacillales.F_Gemellaceae.G_Gemella 3.75404659553 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_mutans 4.19546300349 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Catonella.S_morbi 3.2379265506 Early_RA_Gingivitis 2.88899781897 0.0444528417531 K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_noxia_nov_97_835 1.62614525697 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_169 4.26961557773 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Dialister.S_pneumosintes 3.27093977155 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_multiformis 2.006442716 - K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium.S_sp__HMT_370 0.0 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae.G_Schaalia.S_meyeri 3.46802390276 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_timonensis 2.19295935703 - K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium.S_canifelinum 2.59566728361 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_granulosa 3.54331977277 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales 5.38549050149 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_chosunense 3.19562019685 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_oris_nov_96_926 3.69687653817 - K_Bacteria.P_Firmicutes.C_Mollicutes.O_Mycoplasmatales.F_Mycoplasmataceae.G_Mycoplasma.S_faucium 1.87669045931 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Propionibacteriales.F_Propionibacteriaceae.G_Propionibacterium 3.66898487229 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_goodfellowii 3.52470506686 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Eubacteriaceae.G_Pseudoramibacter 2.81361034536 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_shahii 3.85734694551 Early_RA_Gingivitis 3.31733938143 0.00311287525526 K_Bacteria.P_Firmicutes.C_Mollicutes 1.87669045931 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Bacteroidaceae 2.03419443882 Early_RA_Periodontitis 2.1793277559 0.0341550191025 K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Pasteurellales.F_Pasteurellaceae.G_Haemophilus.S_haemolyticus 2.70299222006 - K_Bacteria.P_Proteobacteria.C_Alphaproteobacteria.O_Sphingomonadales.F_Sphingomonadaceae.G_Sphingomonas 3.46588064161 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_175_nov_97_951 2.04658950261 - K_Bacteria.P_Gracilibacteria__GN02_ 2.8589575511 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Bacillales.F_Gemellaceae.G_Gemella.S_bergeri 3.07401980591 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_.G_Saccharibacteria__TM7___G_6_.S_bacterium_HMT_870 1.85157902466 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae 4.8443012708 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_sp__HMT_417 3.45182609238 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_intermedius 3.82804468821 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Neisseria.S_oralis 3.67611953434 - K_Bacteria.P_Saccharibacteria__TM7_ 4.41336703958 - K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfobacterales 3.24548287607 Early_RA_Periodontitis 2.98424542812 0.00398499132812 K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_hongkongensis 3.90903770557 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_gingivalis 3.43846714628 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae 4.71145332591 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Burkholderiales.F_Comamonadaceae.G_Ottowia.S_sp__HMT_894 2.9898424532 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_gingivalis_nov_97_689 2.8373695498 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae 3.98359823391 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptoniphilaceae.G_Parvimonas 4.57610271227 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Muribaculaceae.G_Muribaculaceae__G_1_ 3.28425424389 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Bacteroidaceae.G_Bacteroidaceae__G_1_.S_bacterium_HMT_272 2.03419443882 Early_RA_Periodontitis 2.14066328533 0.0341550191025 K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_2_ 2.42581165458 Early_RA_Periodontitis 2.24239382958 0.000733023207028 K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_sp__HMT_380 2.7360725726 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Cardiobacteriales.F_Cardiobacteriaceae.G_Cardiobacterium.S_valvarum 2.85609150605 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_massiliensis 4.48785866231 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Negativicutes.F_Veillonellaceae.G_Veillonella.S_atypica 2.68898736359 - K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_2_ 0.873653393651 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_pseudopneumoniae 3.74564205064 Early_RA_Gingivitis 3.44980107201 0.0343191090125 K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_sp__HMT_412 2.87544247961 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Bifidobacteriales.F_Bifidobacteriaceae.G_Scardovia 3.11378117288 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Burkholderiales 4.81537436275 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Propionibacteriales 3.66898487229 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_veroralis_nov_97_955 2.3264738091 Early_RA_Periodontitis 2.47160320385 0.00982362778066 K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Propionibacteriales.F_Propionibacteriaceae.G_Arachnia.S_propionica 4.04706438293 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_951 1.52556648693 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Bifidobacteriales.F_Bifidobacteriaceae.G_Bifidobacterium.S_dentium 2.76923431827 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_5_.S__Eubacterium__saphenum 2.63788037681 Early_RA_Periodontitis 2.36468445726 0.00236743861928 K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Coriobacteriales.F_Atopobiaceae.G_Lancefieldella 3.66813327346 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_6_.S__Eubacterium__minutum 1.2405999203 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_3_.S_bacterium_HMT_495 0.843690170273 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_denticola 3.47636545363 Early_RA_Gingivitis 3.25918547425 0.000941170429431 K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_ 4.41336703958 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_oulorum 3.41800592921 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_ 4.09800236228 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcus.S_stomatis 2.99226045313 Early_RA_Periodontitis 2.55583289904 0.0457051330524 K_Bacteria.P_Firmicutes.C_Bacilli.O_Bacillales.F_Gemellaceae.G_Gemella.S_haemolysans 3.31206628694 - K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfobacterales.F_Desulfobulbaceae.G_Desulfobulbus 3.24548287607 Early_RA_Periodontitis 2.97906316793 0.00398499132812 K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae.G_Schaalia.S_sp__HMT_180 3.85021776693 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_sp__HMT_336 3.12722426355 - K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_2_.O_Bacteroidetes__O_2_.F_Bacteroidetes__F_2_.G_Bacteroidetes__G_6_.S_bacterium_HMT_516 0.873653393651 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_sp__HMT_332 2.9287646118 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Tannerella.S_forsythia 3.68078460114 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_gingivalis_nov_96_008 2.35758818782 - K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfovibrionales 3.63659483105 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_sp__HMT_338 2.68899365967 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_lecithinolyticum 2.86754773051 - K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae 5.0223460927 - K_Bacteria.P_Gracilibacteria__GN02_.C_Gracilibacteria__GN02___C_1_.O_Gracilibacteria__GN02___O_1_.F_Gracilibacteria__GN02___F_1_.G_Gracilibacteria__GN02___G_1_ 2.8589575511 - K_Bacteria.P_Synergistetes.C_Synergistia.O_Synergistales 3.94295778169 Early_RA_Periodontitis 3.66979992062 0.00652027742021 K_Bacteria.P_Bacteroidetes.C_Bacteroidetes__C_2_.O_Bacteroidetes__O_2_ 0.873653393651 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Burkholderiales.F_Burkholderiaceae 4.80883526471 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Burkholderiales.F_Comamonadaceae.G_Brachymonas 2.05253188963 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Bacteroidales__F_2_.G_Bacteroidales__G_2_.S_bacterium_HMT_274 4.08785796994 - K_Bacteria.P_Spirochaetes.C_Spirochaetia 4.04475637543 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Porphyromonas.S_sp__HMT_284_nov_97_746 2.69688893214 Early_RA_Periodontitis 2.51541297173 0.0477918861787 K_Bacteria.P_Firmicutes.C_Tissierellia.O_Tissierellales.F_Tissierellaceae 1.96439974487 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_927_nov_91_411 1.44637275481 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales 4.24863574103 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_flueggei 2.94558668546 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Bifidobacteriales.F_Bifidobacteriaceae 3.13861716071 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_dentalis 2.26282450012 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Negativicutes.F_Veillonellaceae.G_Veillonella.S_rogosae 2.31085053444 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Shuttleworthia.S_satelles 2.51278706294 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_sp__HMT_056 2.84989120202 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptoniphilaceae.G_Peptoniphilaceae__G_1_.S_bacterium_HMT_113 0.396532138931 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Lacrimispora.S_xylanolytica_nov_88_613 2.15015870804 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_oricola 2.19926900448 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella 4.80492112438 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_.G_Saccharibacteria__TM7___G_1_ 4.28590835065 - K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Coriobacteriales 3.93357043618 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_.G_Saccharibacteria__TM7___G_1_.S_bacterium_HMT_869 2.76765347703 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_multispecies_spp5_2 3.56036611106 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_.G_Saccharibacteria__TM7___G_1_.S_bacterium_HMT_346_nov_97_768 0.519950944435 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Neisseria.S_flava 3.0113453725 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria.O_Cardiobacteriales.F_Cardiobacteriaceae 3.76802575709 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_490 1.37288598973 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Oscillospiraceae.G_Caproiciproducens.S_galactitolivorans_nov_90_042 3.02098616038 - K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_amylovorum 1.0434645509 - K_Bacteria.P_Firmicutes.C_Erysipelotrichi.O_Erysipelotrichales 2.89833767768 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_sp__HMT_219 2.41704935345 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_sp__HMT_215 2.67204352779 - K_Bacteria.P_Fusobacteria.C_Fusobacteriia.O_Fusobacteriales.F_Leptotrichiaceae.G_Leptotrichia.S_sp__HMT_212 3.45185436764 - K_Bacteria.P_Proteobacteria.C_Gammaproteobacteria 4.55096323623 Early_RA_Healthy 4.10441499224 0.00793164896617 K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Lachnospiraceae__G_3_.S_bacterium_HMT_100 3.01237200652 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_1_.S__Eubacterium__infirmum 2.71059818529 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Neisseriales.F_Neisseriaceae.G_Neisseria.S_mucosa 3.72174963873 - K_Bacteria.P_Chloroflexi.C_Anaerolineae.O_Anaerolineales 2.61925703181 Early_RA_Periodontitis 2.44607276361 8.09339173119e-05 K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_254 1.50692303318 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Alloprevotella 3.81433426927 Early_RA_Gingivitis 3.44024002834 0.0358405878119 K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_257 2.38352270178 Early_RA_Periodontitis 2.19622554478 0.000451624688105 K_Bacteria.P_Spirochaetes.C_Spirochaetia.O_Spirochaetales.F_Treponemataceae.G_Treponema.S_sp__HMT_258 1.24482572956 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptoniphilaceae.G_Parvimonas.S_micra 4.55481318444 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae.G_Peptidiphaga.S_sp__HMT_183 4.53692585227 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptostreptococcaceae__XI_.G_Peptostreptococcaceae__XI__G_6_ 2.81429236125 Early_RA_Gingivitis 2.60555053396 0.000413700505799 K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Dialister.S_invisus 3.67510610333 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Corynebacteriales.F_Corynebacteriaceae 4.68957737768 - K_Bacteria.P_Firmicutes.C_Erysipelotrichia.O_Erysipelotrichales.F_Erysipelotrichaceae.G_Bulleidia 2.79869437301 Early_RA_Periodontitis 2.58055105229 0.00780379291091 K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Burkholderiales.F_Burkholderiaceae.G_Ralstonia 4.5052190194 - K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfovibrionales.F_Desulfovibrionaceae.G_Bilophila.S_wadsworthia 3.63659483105 Early_RA_Gingivitis 3.47934716258 0.0112992506692 K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Butyrivibrio 2.86575253523 Early_RA_Gingivitis 2.61764751109 0.0343661364743 K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Aerococcaceae.G_Abiotrophia 3.67748463172 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Lachnospiraceae__G_3_ 3.01237200652 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_gordonii 4.53866503258 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Tannerella.S_sp__HMT_808 2.64073228276 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Veillonellaceae__G_1_.S_bacterium_HMT_132 3.05665508112 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Lachnoanaerobaculum.S_umeaense 3.01286760186 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Peptoniphilaceae.G_Parvimonas.S_sp__HMT_110_nov_97_895 0.0 - K_Bacteria.P_Proteobacteria.C_Epsilonproteobacteria.O_Campylobacterales 4.00629605056 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_897 3.70946805749 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_sp__HMT_896 3.34656032301 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_artemidis 3.21699779007 Early_RA_Healthy 2.94030131986 0.0489557510375 K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Coriobacteriales.F_Atopobiaceae.G_Lancefieldella.S_parvula 3.13870714086 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_sp__HMT_376 2.49441040222 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_sp__HMT_304 2.58218187687 Early_RA_Gingivitis 2.3905660478 0.0449445226523 K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_sp__HMT_300 3.09606365685 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_sp__HMT_301 2.09086003685 - K_Bacteria.P_Proteobacteria.C_Betaproteobacteria.O_Burkholderiales.F_Burkholderiaceae.G_Ralstonia.S_sp__HMT_406 4.5052190194 - K_Bacteria.P_Gracilibacteria__GN02_.C_Gracilibacteria__GN02___C_1_.O_Gracilibacteria__GN02___O_1_.F_Gracilibacteria__GN02___F_1_.G_Gracilibacteria__GN02___G_1_.S_bacterium_HMT_872 2.8589575511 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Porphyromonas.S_sp__HMT_275 2.36568384564 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_sinensis 0.0 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Porphyromonas.S_sp__HMT_277 2.39049955346 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Porphyromonadaceae.G_Porphyromonas.S_sp__HMT_278 2.44162556255 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Bacillales.F_Staphylococcaceae.G_Staphylococcus 3.03405243323 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Catonella.S_sp__HMT_451 2.52756220869 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Veillonellales.F_Veillonellaceae.G_Dialister 3.69965266624 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_salivae 3.60371655367 - K_Bacteria.P_Proteobacteria.C_Deltaproteobacteria.O_Desulfovibrionales.F_Desulfomicrobiaceae.G_Desulfomicrobium 1.96364981176 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Clostridiales.F_Lachnospiraceae__XIV_.G_Stomatobaculum 3.17123706296 - K_Bacteria.P_Bacteroidetes.C_Bacteroidia.O_Bacteroidales.F_Prevotellaceae.G_Prevotella.S_sp__HMT_472 3.31717953476 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_oralis_subsp__tigurinus_clade_070 3.15687797903 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Streptococcaceae.G_Streptococcus.S_oralis_subsp__tigurinus_clade_071 4.06768812214 - K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Peptostreptococcaceae.G_Peptoanaerobacter 2.1020780306 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia 4.58599059847 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_.G_Saccharibacteria__TM7___G_1_.S_bacterium_HMT_349 4.03708038781 Early_RA_Gingivitis 3.7305935238 0.0382631536057 K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_.G_Saccharibacteria__TM7___G_1_.S_bacterium_HMT_348 3.63905653956 - K_Bacteria.P_Actinobacteria.C_Actinobacteria.O_Actinomycetales.F_Actinomycetaceae.G_Schaalia.S_cardiffensis 0.0 - K_Bacteria.P_Actinobacteria.C_Coriobacteriia.O_Coriobacteriales.F_Atopobiaceae.G_Olsenella.S_uli 2.61005464886 - K_Bacteria.P_Bacteroidetes.C_Flavobacteriia.O_Flavobacteriales.F_Flavobacteriaceae.G_Capnocytophaga.S_ochracea 2.61427959167 - K_Bacteria.P_Fusobacteria.C_Fusobacteria.O_Fusobacteriales.F_Fusobacteriaceae.G_Fusobacterium 5.0223460927 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Actinomycetales.F_Actinomycetaceae.G_Actinomyces.S_israelii 4.39125171522 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_.G_Saccharibacteria__TM7___G_1_.S_bacterium_HMT_347 3.34762672176 Early_RA_Healthy 3.09159171098 0.0303115315915 K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_.G_Saccharibacteria__TM7___G_1_.S_bacterium_HMT_346 3.78754197594 - K_Bacteria.P_Actinobacteria.C_Actinomycetia.O_Micrococcales.F_Micrococcaceae 4.89549167676 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_sp__HMT_137_nov_97_030 2.50342644367 Early_RA_Gingivitis 2.37680771742 0.0239005170614 K_Bacteria.P_Firmicutes.C_Clostridia.O_Eubacteriales.F_Lachnospiraceae.G_Roseburia.S_intestinalis_nov_93_568 3.15147733013 - K_Bacteria.P_Firmicutes.C_Negativicutes.O_Selenomonadales.F_Selenomonadaceae.G_Selenomonas.S_noxia 3.82306100218 - K_Bacteria.P_Saccharibacteria__TM7_.C_Saccharibacteria__TM7___C_1_.O_Saccharibacteria__TM7___O_1_.F_Saccharibacteria__TM7___F_1_ 4.28904167666 - K_Bacteria.P_Firmicutes.C_Bacilli.O_Lactobacillales.F_Carnobacteriaceae.G_Granulicatella 4.13129526337 -