1 Sample Information

The Sample Information Table shows information for up to 10 samples. For projects with more than 10 samples, the Complete Sample Information Table can be accessed by clicking on the first link below the table. The Read Processing Summary Table can be accessed by clicking on the second link below the table.

More Information

Sample Information Table:
1. SampleID: unique identification code that was assigned to each sample.
2. CustomerLabel: sample name provided for the project and used in analyses.
3. Subgroup Columns: group comparison information, if group comparison information was provided for the project, is displayed in the remaining columns of the table.
4. RawdataFilenames: names of the associated raw sequencing files for each sample (available from the raw data package download).
5. FastQCResults: read quality results for each sample, click on the links to view the results.

Read Processing Summary Table:
1. SampleID: unique identification code that was assigned to each sample.
2. CustomerLabel: sample name provided for the project and used in analyses.
3. RawReads: number of raw sequences generated for each sample.
4. Reads Surviving(%): Percentage of reads survivng quality trimming.
5. Reads Dropped(%): Percentage of reads survivng quality trimming.


SampleID CustomerLabel FastQCResults
zr26466_1 5 Read1;Read2
zr26466_2 12.1 Read1;Read2
zr26466_3 64 Read1;Read2
zr26466_4 84 Read1;Read2
zr26466_5 101 Read1;Read2
zr26466_6 101C Read1;Read2
zr26466_7 111 Read1;Read2
zr26466_8 111.2 Read1;Read2
zr26466_9 113 Read1;Read2
zr26466_10 120C Read1;Read2

Complete Sample Information Table

Read Processing Summary Table

2 Taxonomy Analysis Results

Click on the links below to view the results for each taxonomy analysis:

All Kingdoms

Eukaryotes

Prokaryotes

Virus

Read Distribution Summary

The following composition barplot shows the types of reads assigned to each sample in this project.

Read Distribution Summary Table

3 Genome Match Info Summary

After candidate genomes are identified by Sourmash within each sample, additional read-mapping-based analyses are performed to further validate the presence of those candidate genomes. Click on the link below to view the genome match info for each sample:

More Information
Genome Match Info Table:
1. genome_id: Unique ID of the reference genome.
2. taxid: NCBI taxonomy ID of the reference genome (if applicable).
3. taxa: Full lineage of the reference genome.
4. seq_identity(%): The similarity between the reference genome sequence and the read sequences mapped to it.
5. genome_coverage(%): The percentage of the reference genome sequence covered by mapped reads.
6. genome_ave_depth: The average number of bases mapped to each base of the reference genome sequence.
7. read_depth(>1x): The average number of bases mapped to each base of the reference genome sequence, excluding the bases with no mapping.
8. total_mapped_reads: The total number of reads mapped to the reference genome.


Results

4 Functional Pathway Profiling

Results

5 Antibiotic Resistance Profiling

Results

6 Virulence Factor Profiling

Results