taxon lfc_(Intercept) lfc_Group006F Final -PMA se_(Intercept) se_Group006F Final -PMA W_(Intercept) W_Group006F Final -PMA p_(Intercept) p_Group006F Final -PMA q_(Intercept) q_Group006F Final -PMA diff_(Intercept) diff_Group006F Final -PMA passed_ss_(Intercept) passed_ss_Group006F Final -PMA Streptococcus sp._HMT_057 (SP103) 0.0637354814106538 -0.0142094935233291 0.0984784922024793 0.202946165259625 0.647202043666639 -0.0700160730071008 0.521292690358494 0.94453865765317 1 1 FALSE FALSE TRUE TRUE Eikenella corrodens (SP104) -0.0894210619911815 0.246521799250651 0.203990021270019 0.25368021450021 -0.438359981701339 0.97178173605828 0.662811797818097 0.335338032375426 1 1 FALSE FALSE TRUE TRUE Lautropia mirabilis (SP106) -0.0336102931416457 0.0145426514427872 0.0900135881735849 0.183217246861324 -0.373391327060872 0.0793738127382435 0.712785703780607 0.937524130483533 1 1 FALSE FALSE TRUE TRUE Veillonella tobetsuensis (SP107) -0.110977240794193 0.274371538453815 0.217987746420454 0.294884623910337 -0.509098527860098 0.930436910597416 0.612719622191374 0.356210994691699 1 1 FALSE FALSE TRUE TRUE Schaalia sp._HMT_180 (SP109) 0.109683914122103 -0.204080047996642 0.101441602539455 0.210335537667611 1.08125178798751 -0.970259473314231 0.284671530060194 0.33649640491579 1 1 FALSE FALSE TRUE TRUE Aggregatibacter segnis (SP111) -0.178596758819391 0.401019200306871 0.186142361449626 0.272698512402261 -0.959463270093535 1.47055881153955 0.34152443192414 0.147108641637027 1 1 FALSE FALSE TRUE FALSE Prevotella melaninogenica (SP120) 0.0789002921510182 -0.129797439393793 0.192443089368469 0.382857976806036 0.409992857680374 -0.339022424128702 0.683433232633045 0.735907708930333 1 1 FALSE FALSE TRUE TRUE Oribacterium sinus (SP123) 0.0572823003089969 -0.320812286672717 0.107782642088804 0.204963613924354 0.531461274272724 -1.56521579869839 0.60197522400104 0.135955999295804 1 1 FALSE FALSE TRUE TRUE Fusobacterium hwasookii (SP127) -0.123279183332405 0.181327942623843 0.150333311174211 0.296835680788339 -0.820039034393014 0.610869765192211 0.417053790650795 0.544741631523606 1 1 FALSE FALSE TRUE TRUE Fusobacterium periodonticum (SP130) 0.0955390260880188 -0.183508028751885 0.121332321669145 0.229675631323121 0.787416121060796 -0.798987805953672 0.434545632879004 0.427863625276228 1 1 FALSE FALSE TRUE TRUE Aggregatibacter sp._HMT_458 (SP136) -0.0748297081294297 0.191074195012953 0.105264588140799 0.185300451119843 -0.71087256836401 1.03115882264839 0.48174377604196 0.309344537678614 1 1 FALSE FALSE TRUE TRUE Haemophilus parainfluenzae (SP14) -0.0586515266124517 0.215475943020753 0.185398017232277 0.24605107937308 -0.316354659494389 0.875736629848443 0.752888965180419 0.384848793318108 1 1 FALSE FALSE TRUE TRUE Prevotella jejuni (SP143) -0.209327752669711 0.404149198988756 0.0952054758573564 0.193764862321242 -2.19869446357625 2.08577135269613 0.0502004435016447 0.0610857235351634 1 1 FALSE FALSE TRUE TRUE Streptococcus gordonii (SP144) 0.0111103840264839 0.0809197044624783 0.154968906229904 0.221870851285625 0.071694279173663 0.364715346759573 0.943091862195108 0.716650372057806 1 1 FALSE FALSE TRUE TRUE Neisseria elongata (SP145) -0.116384773656171 0.279166196246512 0.161054172435171 0.290529588664588 -0.722643641554949 0.960887314540636 0.473265566943257 0.341232769854179 1 1 FALSE FALSE TRUE TRUE Streptococcus infantis_clade_431 (SP148) -0.143544032545743 0.257911316138507 0.135558072522426 0.225951827613397 -1.05891172598368 1.14144381509404 0.295838844459667 0.260308356319502 1 1 FALSE FALSE TRUE TRUE Porphyromonas catoniae (SP15) 0.269114203448858 -1.46617894434636 0.124516077702723 0.198940012588534 2.16128076320679 -7.36995501945028 0.0589444406721179 4.2363779242014e-05 1 0.0039398314695073 FALSE TRUE TRUE TRUE Haemophilus haemolyticus (SP163) 0.109938956351975 -0.101583917124716 0.128152257337252 0.250304690684635 0.857877642082057 -0.40584104455599 0.396201620342904 0.687077529405173 1 1 FALSE FALSE TRUE TRUE Haemophilus pittmaniae (SP169) 0.0342074896690571 -0.0438066249168559 0.192367767853996 0.292486377054133 0.177823395523412 -0.149773214595729 0.85952706441592 0.881501548394693 1 1 FALSE FALSE TRUE TRUE Streptococcus australis (SP17) -0.120798831757029 0.241441334872316 0.0921372670474766 0.164662906526388 -1.31107461321578 1.46627640654226 0.195484751295705 0.1484814740682 1 1 FALSE FALSE TRUE FALSE Lancefieldella parvula (SP174) 0.0414439541159822 -0.139992487537757 0.122758883340266 0.23044762771695 0.33760452187486 -0.607480705810107 0.737342800498402 0.5468025932308 1 1 FALSE FALSE TRUE TRUE Salmonella enterica (SP178) 0.667609093116833 -0.776790512206439 0.163648085889304 0.240137359522563 4.07954110485851 -3.23477577062912 0.000496788066715543 0.00380665107696711 0.0452077140711145 0.34259859692704 TRUE FALSE FALSE FALSE Streptococcus sanguinis (SP179) 0.11346361772251 -0.138408653457577 0.182736931671881 0.251206854519321 0.620912350253546 -0.550974827985561 0.537089836869274 0.583767177542572 1 1 FALSE FALSE TRUE TRUE Alloprevotella sp._HMT_473 (SP181) -0.250443619147622 0.646462418407288 0.174723664370214 0.260000855376058 -1.43336977306616 2.48638573697099 0.161761656051619 0.0184990633576423 1 1 FALSE FALSE TRUE FALSE Enterobacter cancerogenus (SP184) 0.374081583761145 -2.07544537256165 0.118901769412414 0.198754370163504 3.14613975561317 -10.4422628335382 0.0162393398440086 1.60728271398447e-05 1 0.0015108457511454 FALSE TRUE FALSE FALSE Haemophilus sp._HMT_036 (SP188) -0.2004389781501 0.381305365379429 0.157364220291874 0.24582831622155 -1.27372650389226 1.55110432858265 0.209447874204635 0.128040497478716 1 1 FALSE FALSE TRUE TRUE Schaalia odontolytica (SP19) 0.00943682414184509 0.0845059042152748 0.115791998593735 0.179292640567119 0.0814980677115253 0.47132946420988 0.935326450683649 0.639173610168826 1 1 FALSE FALSE TRUE TRUE Veillonella parvula (SP2) 0.0149161271116553 0.0727645407085398 0.117399848303309 0.173858817323454 0.127054057796725 0.418526605833085 0.899337076583677 0.677107879527414 1 1 FALSE FALSE TRUE TRUE Lachnoanaerobaculum gingivalis (SP20) 0.037230218558997 -0.0404763558614134 0.104776036941563 0.217930562055063 0.355331425445702 -0.185730516544928 0.724602532715655 0.853793036903956 1 1 FALSE FALSE TRUE TRUE Neisseria subflava (SP200) 0.0346270743417045 -0.010435054581755 0.141559115807797 0.258255989249173 0.244612112361028 -0.0404058570416618 0.807650872450607 0.967913274201716 1 1 FALSE FALSE TRUE TRUE Rothia dentocariosa (SP201) 0.177794224501507 -0.276259953698287 0.166498404682236 0.246552528150885 1.06784341171815 -1.12049126314057 0.290015671945336 0.267122736213388 1 1 FALSE FALSE TRUE TRUE Actinomyces sp._HMT_175 (SP205) 0.147441703693493 -0.224340433637037 0.14518179013788 0.214390712837205 1.01556609512438 -1.04640929016075 0.314538183246238 0.300211910416497 1 1 FALSE FALSE TRUE TRUE Saccharibacteria_(TM7)_[G-6] bacterium_HMT_870 (SP207) 0.00525255009851321 -0.172371852565215 0.115940196294699 0.217156214718727 0.0453039607174909 -0.793768913261271 0.964102275875246 0.432258971933611 1 1 FALSE FALSE TRUE TRUE Streptococcus cristatus_clade_578 (SP24) 0.0223812596476702 -0.0167593743870971 0.123273332427877 0.204247602485917 0.181557999665213 -0.0820542037366274 0.856609403880973 0.934907003151965 1 1 FALSE FALSE TRUE TRUE Streptococcus sp._HMT_066 (SP246) -0.106255130976754 0.264758672039742 0.130630242342584 0.195711034359061 -0.813403765248288 1.35280400978313 0.419494027391797 0.181653538633634 1 1 FALSE FALSE TRUE FALSE Streptococcus mitis (SP249) 0.305177243447859 -0.527582676963633 0.104787778405188 0.219967497843862 2.91233622940086 -2.39845741818695 0.00648865133166296 0.022466085880978 0.577489968518003 1 FALSE FALSE FALSE FALSE Aggregatibacter sp._HMT_513 (SP252) -0.00680039929354772 -0.0344972306109507 0.128534269766178 0.229965409784903 -0.0529072853949271 -0.150010519596045 0.958030020368788 0.881398230150912 1 1 FALSE FALSE TRUE TRUE Citrobacter koseri (SP26) 0.33040622758301 -0.148021987035665 0.25748664943305 0.31341949875637 1.28319751066907 -0.472280721598393 0.211676085731142 0.640992633367214 1 1 FALSE FALSE TRUE TRUE Campylobacter showae (SP265) 0.0420024755043602 -0.0370514554396698 0.222509682104085 0.376570507595386 0.188766956597926 -0.0983918142614623 0.850970297308169 0.921978892940227 1 1 FALSE FALSE TRUE TRUE Streptococcus oralis_subsp._dentisani_clade_058 (SP269) 0.0872148895240046 -0.175368541852781 0.195383221463171 0.307045131196737 0.446378603397346 -0.571149072350587 0.657213410454198 0.57040703784955 1 1 FALSE FALSE TRUE TRUE Gemella sanguinis (SP285) -0.108604603226795 0.269541526263039 0.116067782681855 0.191374753239957 -0.935699818824687 1.40844872011446 0.353518157090872 0.164626308817687 1 1 FALSE FALSE TRUE FALSE Streptococcus oralis_subsp._tigurinus_clade_071 (SP29) -0.0200113559434592 -0.0426997973018687 0.132271911940103 0.247875614164693 -0.15128953418713 -0.172263001529058 0.880832075879132 0.864469857263448 1 1 FALSE FALSE TRUE TRUE Veillonella dispar (SP3) -0.00302345295779376 0.0508265705816031 0.11016306462634 0.199290181426945 -0.027445250983612 0.255038006477177 0.978203949704277 0.799645022119961 1 1 FALSE FALSE TRUE TRUE Klebsiella aerogenes (SP327) 0.464321793804639 -0.553592305609865 0.0701466284268482 0.204495286424624 6.61930308295362 -2.70711523619356 0.000298900359517711 0.0303252651512819 0.0277977334351471 1 TRUE FALSE FALSE FALSE Enterobacter mori (SP330) -0.190633757184879 -0.21253352642057 0.118608341117632 0.239212555264109 -1.6072542233418 -0.888471452453307 0.146665575863038 0.400211668934934 1 1 FALSE FALSE TRUE TRUE Porphyromonas pasteri (SP34) 0.0920891796039183 -0.123667688191997 0.178430149597114 0.306043991660793 0.516107730738615 -0.404084679202151 0.607847962286904 0.687717452204732 1 1 FALSE FALSE TRUE TRUE Fusobacterium sp._HMT_204 (SP343) -0.218743506376894 0.440973244701368 0.176718212517918 0.340543371079692 -1.23780963637076 1.29491066968434 0.221934606380465 0.201676284818418 1 1 FALSE FALSE TRUE TRUE Neisseria mucosa (SP346) 0.0418748960080821 0.0305050090505011 0.131368922776766 0.202466294584858 0.318758007015401 0.15066709801278 0.752362887537916 0.881358322465455 1 1 FALSE FALSE TRUE TRUE Veillonella atypica (SP35) 0.0221985122741936 0.0153098239866608 0.120848562690507 0.192703634718909 0.183688674320802 0.0794475102090979 0.854921199631237 0.936959909683287 1 1 FALSE FALSE TRUE TRUE Streptococcus sp._HMT_061 (SP366) -0.0281279352258368 0.00610209230535464 0.0910487556178714 0.179163270664775 -0.308932670578045 0.0340588351770605 0.759105661331991 0.973013313647864 1 1 FALSE FALSE TRUE TRUE Haemophilus sputorum (SP371) -0.115076079757959 0.240227886114469 0.171413511242397 0.272633897242713 -0.67133610952773 0.881137263355795 0.505159129620713 0.382545259576657 1 1 FALSE FALSE TRUE TRUE Rothia mucilaginosa (SP391) -0.11222794215171 0.218295547385998 0.166547161329092 0.272641130468272 -0.673850825532538 0.800669902633792 0.503448932717873 0.427037048296974 1 1 FALSE FALSE TRUE FALSE Streptococcus sp._HMT_423 (SP4) 0.0173715057485635 0.0675030150580196 0.233041550509445 0.298844047426866 0.0745425256165185 0.225880406985651 0.940835209556502 0.822088529657242 1 1 FALSE FALSE TRUE TRUE Leptotrichia sp._HMT_215 (SP40) 0.00690142075619368 0.0142003033958558 0.131314756894822 0.241654121607726 0.0525563228337044 0.0587629265388943 0.958279362878301 0.953357860452232 1 1 FALSE FALSE TRUE TRUE Gemella haemolysans (SP41) 0.0045233905071811 -0.0937033703154782 0.0746063835141962 0.177658398892783 0.0606300733813264 -0.527435634337941 0.951934747946084 0.600602128355898 1 1 FALSE FALSE TRUE TRUE Actinomyces graevenitzii (SP42) 0.0365096793656141 -0.333272680300635 0.102507569523541 0.180459480378167 0.356165691327112 -1.84680062029568 0.724209114301705 0.0746616277010193 1 1 FALSE FALSE TRUE TRUE Streptococcus sp._HMT_064 (SP443) 0.00354277847296248 -0.298126368329297 0.17162329543159 0.267366812894764 0.0206427598540936 -1.11504627332578 0.983672009525301 0.273986059823201 1 1 FALSE FALSE TRUE TRUE Campylobacter concisus (SP45) 0.187018738443088 -0.357040688961883 0.191518664013558 0.284625897699368 0.97650398412266 -1.25442094991301 0.333169239204132 0.215091718077662 1 1 FALSE FALSE TRUE TRUE Granulicatella adiacens (SP46) -0.121221335809159 0.364487675538857 0.179747347043595 0.229106375088629 -0.674398469868703 1.59091022848167 0.502737295082927 0.117066143906282 1 1 FALSE FALSE TRUE FALSE Schaalia lingnae (SP49) -0.139649623281773 0.227147492864923 0.0910066086688353 0.18814235938783 -1.53449980528277 1.20731712732851 0.131756710404215 0.233481486916362 1 1 FALSE FALSE TRUE TRUE Stomatobaculum sp._HMT_097 (SP5) -0.294072997379565 0.669349283151313 0.167791663202211 0.280511260196185 -1.75260791726683 2.38617616520343 0.0924371186113934 0.0252620913366253 1 1 FALSE FALSE TRUE FALSE Neisseria flava (SP53) 0.0215343487632114 0.0517129327541721 0.205797689958333 0.295499447245752 0.104638437717991 0.175001791834707 0.917030052157124 0.861698385556564 1 1 FALSE FALSE TRUE TRUE Fusobacterium nucleatum (SP56) -0.135623406816536 0.299249958541316 0.227941058110462 0.390543205334987 -0.594993319504606 0.766240340257963 0.55433315672458 0.446870027157931 1 1 FALSE FALSE TRUE FALSE Schaalia sp._HMT_172 (SP57) 0.140915373611424 -0.257222392801589 0.0812124202949701 0.201018626320805 1.73514559841472 -1.27959481919396 0.0884194623867127 0.20615829010761 1 1 FALSE FALSE TRUE TRUE Catonella morbi (SP58) -0.292927276299188 0.64132568501313 0.265021527578534 0.357010615707521 -1.10529615829938 1.79637707338801 0.27547530953327 0.0798052501494411 1 1 FALSE FALSE TRUE TRUE Neisseria sicca (SP614) -0.536924126061785 0.843848768727821 0.0584930186806433 0.170002376859757 -9.17928563395319 4.96374688586825 1.72754197881597e-06 0.000426252764225893 0.000162388946008701 0.0392152543087821 TRUE TRUE FALSE FALSE Klebsiella pneumoniae (SP63) 0.106819985410919 -0.192790523877837 0.312390731608009 0.454991132030513 0.341943516893317 -0.42372369548712 0.733771547453919 0.673514968799608 1 1 FALSE FALSE TRUE TRUE Neisseria flavescens (SP68) -0.0902222908782169 0.298061150686837 0.174489226692391 0.246030306728946 -0.517065108193017 1.21148144165513 0.60707699261948 0.230623777838677 1 1 FALSE FALSE TRUE TRUE Raoultella planticola (SP69) 0.218976817453543 -0.299623612329995 0.0672315806994294 0.17635805984002 3.25705293814997 -1.69895049084682 0.0173126037813492 0.140242698626753 1 1 FALSE FALSE FALSE TRUE Streptococcus downii (SP70) -0.337559925492536 0.604972072806368 0.127162418268026 0.197449160447738 -2.65455729837605 3.06393844083473 0.0125838648300745 0.00458615398836039 1 0.408167704964075 FALSE FALSE FALSE FALSE Saccharibacteria_(TM7)_[G-1] bacterium_HMT_352 (SP75) 0.112579276673292 -0.352609878676906 0.126828556569278 0.215857506006093 0.88764927803777 -1.63353077315252 0.379556068176474 0.109493803810191 1 1 FALSE FALSE TRUE TRUE Prevotella histicola (SP79) -0.23118526309656 0.356146163981236 0.0678301807234558 0.170948083431787 -3.40829496001351 2.08335862462797 0.0092464046203996 0.0707448440674382 0.813683606595164 1 FALSE FALSE FALSE TRUE Gemella morbillorum (SP8) 0.0760707446242711 -0.156461085487291 0.12867326695243 0.226853090992144 0.59119307705457 -0.689702242111874 0.557285138773237 0.493846352280402 1 1 FALSE FALSE TRUE TRUE Streptococcus oralis (SP80) 0.205785892485623 -0.336242099378534 0.132343990503586 0.227243963141235 1.55493189908042 -1.47965250531014 0.125402486674073 0.144377427792377 1 1 FALSE FALSE TRUE FALSE Streptococcus oralis_subsp._tigurinus_clade_070 (SP82) 0.386420238840917 -0.871673648958726 0.309704243159386 0.451738649482368 1.24770728001311 -1.92959723494447 0.218592214406005 0.0599759504094006 1 1 FALSE FALSE TRUE TRUE Aggregatibacter aphrophilus (SP84) -0.206244928937366 0.483655318481331 0.188957432051201 0.255497965720103 -1.09148884327281 1.89299087810027 0.279816294906046 0.0636254572225372 1 1 FALSE FALSE TRUE FALSE Streptococcus parasanguinis_clade_411 (SP88) 0.0357291995438295 -0.0242808579485898 0.084589636723441 0.161826676143094 0.422382704640797 -0.150042369572738 0.674392395441633 0.881280077954875 1 1 FALSE FALSE TRUE TRUE Streptococcus salivarius (SP89) -0.0402719112508663 0.130435689026326 0.135789724785647 0.208884815882289 -0.296575542180664 0.624438346441753 0.767907671970097 0.534921578152936 1 1 FALSE FALSE TRUE TRUE Solobacterium moorei (SP9) 0.171029649459737 -0.31405615401123 0.140782146583425 0.261248411602036 1.21485325810392 -1.20213612816003 0.229707541644588 0.234555995683143 1 1 FALSE FALSE TRUE TRUE Veillonella rogosae (SP90) -0.0486402358097874 0.208956746968774 0.167898247077162 0.227938469296814 -0.289700676788088 0.916724358171758 0.773078378287372 0.363083255842563 1 1 FALSE FALSE TRUE TRUE Neisseria perflava (SP94) 0.0966748926886019 -0.148348876136162 0.140248546996083 0.26409800943423 0.689311189022885 -0.561719024137917 0.493525435063992 0.576589420300339 1 1 FALSE FALSE TRUE TRUE Actinomyces sp._HMT_169 (SP95) 0.219709902653242 -0.409422561136545 0.201235389123863 0.273230198805267 1.09180549012683 -1.4984528171732 0.280861044690223 0.141156407745425 1 1 FALSE FALSE TRUE TRUE Granulicatella elegans (SP99) 0.0503922636415014 0.0768378110295781 0.139121433519552 0.221734230670871 0.362217829177409 0.346531118795237 0.719367247102448 0.731018369278507 1 1 FALSE FALSE TRUE TRUE Campylobacter concisus_nov_96.963% (SPN15) 0.166844306111444 -0.302607530933401 0.101971160228818 0.209567040419302 1.63619111263473 -1.44396528350996 0.107725050970429 0.154634392254759 1 1 FALSE FALSE TRUE TRUE Neisseria sp._HMT_020_nov_94.070% (SPN248) -0.245493521389549 0.484519018925565 0.131896218205018 0.235830772051229 -1.86126277713252 2.05451991998871 0.0755371000748731 0.051458534666057 1 1 FALSE FALSE TRUE TRUE Haemophilus haemolyticus_nov_97.947% (SPN447) -0.0504362354152453 0.356745684055283 0.0968777654698206 0.194695787704128 -0.520617245563505 1.83232358677126 0.608978625406798 0.0835008968002021 1 1 FALSE FALSE TRUE TRUE Streptococcus sanguinis_nov_97.782% (SPN62) 0.0904320253156252 -0.0786905503771575 0.214553748166267 0.30146453873739 0.421488909368974 -0.261027551388742 0.675040889710824 0.795046190730091 1 1 FALSE FALSE TRUE TRUE Oribacterium asaccharolyticum_parvum (SPP10) -0.107837622935188 0.351521418855457 0.118917761709247 0.214809264992325 -0.906825199072024 1.63643508983664 0.377954232500449 0.121264129664418 1 1 FALSE FALSE TRUE TRUE Staphylococcus argenteus_aureus_roterodami (SPP18) -0.44116817884336 0.807434854481302 0.101214565452989 0.21355022757718 -4.35874201374969 3.78100676193138 0.000427421693230937 0.0014910821727084 0.0393227957772462 0.135688477716464 TRUE FALSE FALSE FALSE Veillonella dispar_parvula (SPP25) 0.0509227342593907 -0.00439247460803652 0.129660564198349 0.184288935238224 0.392738798988189 -0.0238347169479195 0.695952135466878 0.981066261843013 1 1 FALSE FALSE TRUE TRUE Streptococcus infantis_infantis_clade_638 (SPP29) -0.0831343350185906 0.152488161785002 0.106831901335589 0.192983596259222 -0.778178933251801 0.790161261064773 0.440931400562696 0.433980156921247 1 1 FALSE FALSE TRUE TRUE Streptococcus parasanguinis_parasanguinis_clade_721 (SPP53) 0.0125914242291452 -0.000574494037032189 0.162762385706105 0.228274414925266 0.0773607745703674 -0.00251668167551879 0.938622478249469 0.998001255076306 1 1 FALSE FALSE TRUE TRUE Veillonella denticariosi_dispar_parvula (SPP6) -0.00869741183101532 0.11541557114915 0.130540376558013 0.202354516852726 -0.0666262198742021 0.570363206832438 0.947112420376102 0.570672968133629 1 1 FALSE FALSE TRUE TRUE Streptococcus multispecies_sppn11_2_nov_97.976% (SPPN11) -0.341997915855584 0.618885657523214 0.0604219506053269 0.164627041582414 -5.66016013103412 3.75931955998489 0.000766344795840466 0.00708118859909655 0.0689710316256419 0.623144596720497 FALSE FALSE FALSE FALSE