QIIME 2

ANCOM Volcano Plot

ANCOM statistical results

W
Campylobacter concisus (SP45) 427
Porphyromonas pasteri (SP34) 426
Klebsiella pneumoniae (SP63) 417
Neisseria elongata (SP145) 413
Fusobacterium periodonticum (SP130) 411
Aggregatibacter segnis (SP111) 411
Campylobacter concisus_nov_96.963% (SPN15) 408
Aggregatibacter sp. HMT513 (SP252) 405
Neisseria mucosa (SP346) 405
Prevotella melaninogenica (SP120) 405
Haemophilus sputorum (SP371) 404
Aggregatibacter sp. HMT458 (SP136) 400
Haemophilus sp. HMT036 (SP188) 399
Aggregatibacter aphrophilus (SP84) 399
Veillonella tobetsuensis (SP107) 396
Haemophilus haemolyticus (SP163) 396
Veillonella atypica (SP35) 395
Veillonella rogosae (SP90) 395
Alloprevotella sp. HMT473 (SP181) 394
Gemella sanguinis (SP285) 392
Haemophilus parainfluenzae (SP14) 389
Fusobacterium nucleatum (SP56) 388
Campylobacter showae (SP265) 388
Neisseria perflava (SP94) 388
Veillonella parvula (SP2) 387
Neisseria flava (SP53) 386
Veillonella multispecies_spp25_2 (SPP25) 386
Veillonella multispecies_spp6_3 (SPP6) 385
Streptococcus oralis (SP80) 381
Neisseria sp. HMT020 nov_94.070% (SPN248) 381
Eikenella corrodens (SP104) 380
Saccharibacteria_(TM7)_[G-1] bacterium HMT352 (SP75) 376
Veillonella dispar (SP3) 376
Neisseria flavescens (SP68) 370
Prevotella nanceiensis (SP25) 370
Porphyromonas catoniae (SP15) 369
Solobacterium moorei (SP9) 362
Haemophilus pittmaniae (SP169) 362
Gemella haemolysans (SP41) 360
Streptococcus oralis_subsp._tigurinus_clade_071 (SP29) 359
Gemella morbillorum (SP8) 357
Leptotrichia sp. HMT215 (SP40) 354
Haemophilus haemolyticus_nov_97.947% (SPN447) 353
Streptococcus mitis (SP249) 352
Neisseria oralis (SP198) 352
Fusobacterium sp. HMT204 (SP343) 347
Alloprevotella sp. HMT308 (SP52) 345
Prevotella salivae (SP47) 344
Veillonella sp. HMT780 (SP60) 344
Granulicatella elegans (SP99) 344
Neisseria subflava (SP200) 341
Lautropia mirabilis (SP106) 339
Streptococcus oralis_subsp._dentisani_clade_058 (SP269) 339
Prevotella shahii (SP165) 337
Capnocytophaga sputigena (SP59) 333
Prevotella jejuni (SP143) 331
Prevotella histicola (SP79) 331
Fusobacterium hwasookii (SP127) 329
Capnocytophaga gingivalis (SP110) 329
Capnocytophaga endodontalis (SP67) 329
Saccharibacteria_(TM7)_[G-1] bacterium HMT348 (SP196) 329
Haemophilus paraphrohaemolyticus (SP291) 327
Alloprevotella tannerae (SP315) 326
Campylobacter sp. HMT044 (SP348) 325
Download table as TSV

Percentile abundances of features by group

Percentile 0.0 25.0 50.0 75.0 100.0 0.0 25.0 50.0 75.0 100.0
Group Baseline Baseline Baseline Baseline Baseline Final C +PMA Final C +PMA Final C +PMA Final C +PMA Final C +PMA
Campylobacter concisus (SP45) 100.0 250.50 1074.5 2793.75 4310.0 1.0 1.0 1.0 7.75 217.0
Porphyromonas pasteri (SP34) 262.0 583.00 1057.0 2492.25 6973.0 1.0 1.0 1.0 20.00 333.0
Klebsiella pneumoniae (SP63) 1.0 7.00 35.5 239.75 1996.0 1.0 76.5 447.5 5596.00 63317.0
Neisseria elongata (SP145) 35.0 204.50 829.0 1804.25 4223.0 1.0 1.0 1.0 24.25 523.0
Fusobacterium periodonticum (SP130) 14.0 151.25 661.0 2033.25 6726.0 1.0 1.0 1.0 26.75 334.0
Aggregatibacter segnis (SP111) 164.0 298.00 521.5 671.75 2236.0 1.0 1.0 1.0 23.50 524.0
Campylobacter concisus_nov_96.963% (SPN15) 6.0 44.00 300.0 736.25 1159.0 1.0 1.0 1.0 1.50 22.0
Aggregatibacter sp. HMT513 (SP252) 1.0 80.00 139.5 182.25 393.0 1.0 1.0 1.0 1.00 44.0
Neisseria mucosa (SP346) 1.0 350.50 695.5 1412.00 4662.0 1.0 1.0 1.0 55.75 840.0
Prevotella melaninogenica (SP120) 64.0 210.25 376.0 637.25 1229.0 1.0 1.0 1.0 16.50 307.0
Haemophilus sputorum (SP371) 1.0 42.75 152.5 430.50 1717.0 1.0 1.0 1.0 1.00 8.0
Aggregatibacter sp. HMT458 (SP136) 12.0 32.00 54.0 100.25 444.0 1.0 1.0 1.0 1.00 1.0
Haemophilus sp. HMT036 (SP188) 1.0 21.75 69.5 160.50 413.0 1.0 1.0 1.0 1.00 32.0
Aggregatibacter aphrophilus (SP84) 1.0 66.50 139.0 325.50 1695.0 1.0 1.0 1.0 1.00 87.0
Veillonella tobetsuensis (SP107) 76.0 115.75 135.0 212.75 588.0 1.0 1.0 1.0 16.50 130.0
Haemophilus haemolyticus (SP163) 1.0 13.00 36.0 82.25 276.0 1.0 1.0 1.0 1.00 22.0
Veillonella atypica (SP35) 39.0 523.00 974.0 2635.50 5770.0 1.0 1.0 1.0 299.75 1156.0
Veillonella rogosae (SP90) 344.0 1300.00 2825.0 3680.25 10720.0 1.0 1.0 8.5 1141.50 4156.0
Alloprevotella sp. HMT473 (SP181) 1.0 16.00 51.0 95.25 302.0 1.0 1.0 1.0 1.00 10.0
Gemella sanguinis (SP285) 1.0 13.75 105.5 421.50 721.0 1.0 1.0 1.0 1.75 40.0
Haemophilus parainfluenzae (SP14) 5256.0 9419.00 11578.5 15599.75 27948.0 1.0 1.0 393.5 9014.50 39760.0
Fusobacterium nucleatum (SP56) 1.0 13.50 40.0 108.25 601.0 1.0 1.0 1.0 1.00 1.0
Campylobacter showae (SP265) 1.0 16.75 67.0 210.00 345.0 1.0 1.0 1.0 1.00 17.0
Neisseria perflava (SP94) 597.0 1052.25 1900.5 3494.75 9141.0 1.0 1.0 184.5 1268.50 6241.0
Veillonella parvula (SP2) 559.0 864.25 1259.5 1920.75 3042.0 1.0 1.0 4.5 1079.00 1905.0
Neisseria flava (SP53) 1555.0 3284.75 4634.0 9581.00 25086.0 1.0 1.0 331.5 2629.00 8500.0
Veillonella multispecies_spp25_2 (SPP25) 1955.0 3375.00 5267.0 9121.75 14514.0 1.0 1.0 68.5 3871.00 10055.0
Veillonella multispecies_spp6_3 (SPP6) 126.0 340.00 467.0 588.75 1607.0 1.0 1.0 1.0 298.00 1099.0
Streptococcus oralis (SP80) 1.0 40.25 113.0 185.00 782.0 1.0 1.0 1.0 11.25 24.0
Neisseria sp. HMT020 nov_94.070% (SPN248) 1.0 9.25 20.0 78.25 699.0 1.0 1.0 1.0 1.00 14.0
Eikenella corrodens (SP104) 93.0 179.25 228.0 378.75 778.0 1.0 1.0 3.0 99.00 556.0
Saccharibacteria_(TM7)_[G-1] bacterium HMT352 (SP75) 1.0 4.00 36.5 79.25 234.0 1.0 1.0 1.0 1.00 10.0
Veillonella dispar (SP3) 68.0 246.50 389.5 565.25 1607.0 1.0 1.0 1.0 259.75 895.0
Neisseria flavescens (SP68) 586.0 2918.50 3827.0 6820.00 20640.0 1.0 1.0 576.5 2890.00 31969.0
Prevotella nanceiensis (SP25) 1.0 1.00 33.5 145.50 305.0 1.0 1.0 1.0 1.00 3.0
Porphyromonas catoniae (SP15) 1.0 3.00 21.0 81.00 368.0 1.0 1.0 1.0 1.00 4.0
Solobacterium moorei (SP9) 1.0 1.00 10.0 102.75 355.0 1.0 1.0 1.0 1.00 1.0
Haemophilus pittmaniae (SP169) 1.0 25.25 61.5 135.00 370.0 1.0 1.0 1.0 1.00 88.0
Gemella haemolysans (SP41) 1.0 1.00 28.0 203.50 1005.0 1.0 1.0 1.0 1.00 3.0
Streptococcus oralis_subsp._tigurinus_clade_071 (SP29) 1.0 1.00 16.5 66.00 497.0 1.0 1.0 1.0 1.00 15.0
Gemella morbillorum (SP8) 1.0 1.00 22.0 190.75 362.0 1.0 1.0 1.0 1.00 39.0
Leptotrichia sp. HMT215 (SP40) 1.0 1.00 50.5 215.25 492.0 1.0 1.0 1.0 1.00 6.0
Haemophilus haemolyticus_nov_97.947% (SPN447) 1.0 1.00 10.0 36.75 175.0 1.0 1.0 1.0 1.00 4.0
Streptococcus mitis (SP249) 1.0 1.00 1.0 122.75 378.0 1.0 1.0 1.0 1.00 1.0
Neisseria oralis (SP198) 1.0 6.00 13.5 18.50 37.0 1.0 1.0 1.0 1.00 8.0
Fusobacterium sp. HMT204 (SP343) 1.0 1.00 11.0 24.00 74.0 1.0 1.0 1.0 1.00 1.0
Alloprevotella sp. HMT308 (SP52) 1.0 1.00 6.5 26.25 135.0 1.0 1.0 1.0 1.00 4.0
Prevotella salivae (SP47) 1.0 1.00 8.0 41.50 73.0 1.0 1.0 1.0 1.00 1.0
Veillonella sp. HMT780 (SP60) 1.0 1.00 8.5 13.00 101.0 1.0 1.0 1.0 1.00 1.0
Granulicatella elegans (SP99) 1.0 1.00 8.5 22.25 62.0 1.0 1.0 1.0 1.00 1.0
Neisseria subflava (SP200) 321.0 725.00 864.0 1114.00 2128.0 1.0 1.0 55.0 1252.50 18380.0
Lautropia mirabilis (SP106) 3.0 11.00 23.5 56.50 326.0 1.0 1.0 1.0 8.00 293.0
Streptococcus oralis_subsp._dentisani_clade_058 (SP269) 1.0 1.00 12.5 45.25 133.0 1.0 1.0 1.0 1.00 11.0
Prevotella shahii (SP165) 1.0 1.00 3.5 27.00 91.0 1.0 1.0 1.0 1.00 1.0
Capnocytophaga sputigena (SP59) 1.0 1.00 4.5 17.50 42.0 1.0 1.0 1.0 1.00 1.0
Prevotella jejuni (SP143) 1.0 1.00 3.5 16.75 63.0 1.0 1.0 1.0 1.00 1.0
Prevotella histicola (SP79) 1.0 1.00 2.0 18.25 50.0 1.0 1.0 1.0 1.00 1.0
Fusobacterium hwasookii (SP127) 1.0 1.00 6.5 39.00 102.0 1.0 1.0 1.0 1.00 1.0
Capnocytophaga gingivalis (SP110) 1.0 1.00 1.0 30.25 72.0 1.0 1.0 1.0 1.00 1.0
Capnocytophaga endodontalis (SP67) 1.0 1.00 2.5 19.00 51.0 1.0 1.0 1.0 1.00 1.0
Saccharibacteria_(TM7)_[G-1] bacterium HMT348 (SP196) 1.0 1.00 4.5 20.25 47.0 1.0 1.0 1.0 1.00 1.0
Haemophilus paraphrohaemolyticus (SP291) 1.0 1.00 5.5 15.25 67.0 1.0 1.0 1.0 1.00 1.0
Alloprevotella tannerae (SP315) 1.0 1.00 1.0 15.00 38.0 1.0 1.0 1.0 1.00 1.0
Campylobacter sp. HMT044 (SP348) 1.0 1.00 1.0 48.50 252.0 1.0 1.0 1.0 1.00 1.0
Download table as TSV