QIIME 2

ANCOM Volcano Plot

ANCOM statistical results

W
Porphyromonas pasteri (SP34) 426
Klebsiella pneumoniae (SP63) 426
Neisseria elongata (SP145) 418
Campylobacter concisus (SP45) 418
Prevotella melaninogenica (SP120) 417
Neisseria perflava (SP94) 417
Fusobacterium periodonticum (SP130) 412
Aggregatibacter segnis (SP111) 411
Neisseria mucosa (SP346) 411
Neisseria flava (SP53) 410
Veillonella tobetsuensis (SP107) 407
Campylobacter concisus_nov_96.963% (SPN15) 406
Eikenella corrodens (SP104) 405
Veillonella atypica (SP35) 401
Veillonella rogosae (SP90) 397
Haemophilus sputorum (SP371) 396
Gemella sanguinis (SP285) 393
Aggregatibacter sp. HMT513 (SP252) 392
Aggregatibacter aphrophilus (SP84) 392
Streptococcus oralis (SP80) 392
Haemophilus sp. HMT036 (SP188) 390
Veillonella multispecies_spp25_2 (SPP25) 389
Neisseria subflava (SP200) 388
Alloprevotella sp. HMT473 (SP181) 387
Aggregatibacter sp. HMT458 (SP136) 387
Haemophilus haemolyticus (SP163) 387
Veillonella multispecies_spp6_3 (SPP6) 384
Campylobacter showae (SP265) 384
Veillonella parvula (SP2) 381
Veillonella dispar (SP3) 381
Neisseria flavescens (SP68) 379
Fusobacterium nucleatum (SP56) 378
Granulicatella adiacens (SP46) 375
Rothia mucilaginosa (SP391) 375
Saccharibacteria_(TM7)_[G-1] bacterium HMT352 (SP75) 375
Streptococcus sp. HMT423 (SP4) 372
Neisseria sp. HMT020 nov_94.070% (SPN248) 371
Lautropia mirabilis (SP106) 367
Haemophilus pittmaniae (SP169) 365
Rothia dentocariosa (SP201) 364
Porphyromonas catoniae (SP15) 363
Streptococcus oralis_subsp._tigurinus_clade_071 (SP29) 363
Prevotella nanceiensis (SP25) 361
Gemella haemolysans (SP41) 358
Solobacterium moorei (SP9) 358
Schaalia odontolytica (SP19) 356
Gemella morbillorum (SP8) 356
Neisseria sicca (SP614) 356
Haemophilus haemolyticus_nov_97.947% (SPN447) 355
Neisseria oralis (SP198) 354
Streptococcus infantis_clade_431 (SP148) 353
Streptococcus gordonii (SP144) 352
Streptococcus oralis_subsp._dentisani_clade_058 (SP269) 350
Streptococcus oralis_subsp._tigurinus_clade_070 (SP82) 349
Alloprevotella sp. HMT308 (SP52) 347
Streptococcus mitis (SP249) 346
Granulicatella elegans (SP99) 346
Leptotrichia sp. HMT215 (SP40) 346
Fusobacterium sp. HMT204 (SP343) 344
Rothia aeria (SP621) 343
Streptococcus multispecies_spp29_2 (SPP29) 343
Prevotella salivae (SP47) 343
Streptococcus parasanguinis_clade_411 (SP88) 342
Kingella oralis (SP299) 339
Streptococcus salivarius (SP89) 339
Streptococcus sp. HMT061 (SP366) 337
Streptococcus multispecies_spp53_2 (SPP53) 336
Streptococcus australis (SP17) 335
Veillonella sp. HMT780 (SP60) 335
Streptococcus sp. HMT066 (SP246) 332
Saccharibacteria_(TM7)_[G-6] bacterium HMT870 (SP207) 331
Prevotella shahii (SP165) 330
Alloprevotella tannerae (SP315) 329
Prevotella jejuni (SP143) 329
Capnocytophaga sputigena (SP59) 329
Prevotella histicola (SP79) 328
Haemophilus paraphrohaemolyticus (SP291) 328
Fusobacterium hwasookii (SP127) 327
Saccharibacteria_(TM7)_[G-1] bacterium HMT348 (SP196) 327
Capnocytophaga endodontalis (SP67) 326
Campylobacter sp. HMT044 (SP348) 325
Schaalia sp. HMT180 (SP109) 322
Schaalia lingnae (SP49) 322
Stomatobaculum sp. HMT097 (SP5) 319
Capnocytophaga gingivalis (SP110) 319
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Percentile abundances of features by group

Percentile 0.0 25.0 50.0 75.0 100.0 0.0 25.0 50.0 75.0 100.0
Group Baseline Baseline Baseline Baseline Baseline Final B +PMA Final B +PMA Final B +PMA Final B +PMA Final B +PMA
Porphyromonas pasteri (SP34) 262.0 583.00 1057.0 2492.25 6973.0 1.0 1.0 1.0 1.00 37.0
Klebsiella pneumoniae (SP63) 1.0 7.00 35.5 239.75 1996.0 1.0 453.5 4476.5 14128.00 65308.0
Neisseria elongata (SP145) 35.0 204.50 829.0 1804.25 4223.0 1.0 1.0 1.0 1.00 34.0
Campylobacter concisus (SP45) 100.0 250.50 1074.5 2793.75 4310.0 1.0 1.0 1.0 1.50 74.0
Prevotella melaninogenica (SP120) 64.0 210.25 376.0 637.25 1229.0 1.0 1.0 1.0 1.00 11.0
Neisseria perflava (SP94) 597.0 1052.25 1900.5 3494.75 9141.0 1.0 1.0 1.0 6.50 1641.0
Fusobacterium periodonticum (SP130) 14.0 151.25 661.0 2033.25 6726.0 1.0 1.0 1.0 1.50 33.0
Aggregatibacter segnis (SP111) 164.0 298.00 521.5 671.75 2236.0 1.0 1.0 1.0 1.00 172.0
Neisseria mucosa (SP346) 1.0 350.50 695.5 1412.00 4662.0 1.0 1.0 1.0 1.00 507.0
Neisseria flava (SP53) 1555.0 3284.75 4634.0 9581.00 25086.0 1.0 1.0 18.5 168.75 3236.0
Veillonella tobetsuensis (SP107) 76.0 115.75 135.0 212.75 588.0 1.0 1.0 1.0 1.00 11.0
Campylobacter concisus_nov_96.963% (SPN15) 6.0 44.00 300.0 736.25 1159.0 1.0 1.0 1.0 1.00 18.0
Eikenella corrodens (SP104) 93.0 179.25 228.0 378.75 778.0 1.0 1.0 1.0 7.25 76.0
Veillonella atypica (SP35) 39.0 523.00 974.0 2635.50 5770.0 1.0 1.0 1.0 40.25 480.0
Veillonella rogosae (SP90) 344.0 1300.00 2825.0 3680.25 10720.0 1.0 1.0 1.0 220.25 2140.0
Haemophilus sputorum (SP371) 1.0 42.75 152.5 430.50 1717.0 1.0 1.0 1.0 1.00 50.0
Gemella sanguinis (SP285) 1.0 13.75 105.5 421.50 721.0 1.0 1.0 1.0 1.00 7.0
Aggregatibacter sp. HMT513 (SP252) 1.0 80.00 139.5 182.25 393.0 1.0 1.0 1.0 1.00 32.0
Aggregatibacter aphrophilus (SP84) 1.0 66.50 139.0 325.50 1695.0 1.0 1.0 1.0 1.00 68.0
Streptococcus oralis (SP80) 1.0 40.25 113.0 185.00 782.0 1.0 1.0 1.0 1.00 4.0
Haemophilus sp. HMT036 (SP188) 1.0 21.75 69.5 160.50 413.0 1.0 1.0 1.0 1.00 31.0
Veillonella multispecies_spp25_2 (SPP25) 1955.0 3375.00 5267.0 9121.75 14514.0 1.0 1.0 9.5 1463.00 7069.0
Neisseria subflava (SP200) 321.0 725.00 864.0 1114.00 2128.0 1.0 1.0 12.5 99.00 721.0
Alloprevotella sp. HMT473 (SP181) 1.0 16.00 51.0 95.25 302.0 1.0 1.0 1.0 1.00 1.0
Aggregatibacter sp. HMT458 (SP136) 12.0 32.00 54.0 100.25 444.0 1.0 1.0 1.0 1.00 14.0
Haemophilus haemolyticus (SP163) 1.0 13.00 36.0 82.25 276.0 1.0 1.0 1.0 1.00 18.0
Veillonella multispecies_spp6_3 (SPP6) 126.0 340.00 467.0 588.75 1607.0 1.0 1.0 1.0 89.25 810.0
Campylobacter showae (SP265) 1.0 16.75 67.0 210.00 345.0 1.0 1.0 1.0 1.00 5.0
Veillonella parvula (SP2) 559.0 864.25 1259.5 1920.75 3042.0 1.0 1.0 5.0 347.50 3012.0
Veillonella dispar (SP3) 68.0 246.50 389.5 565.25 1607.0 1.0 1.0 1.0 97.50 6115.0
Neisseria flavescens (SP68) 586.0 2918.50 3827.0 6820.00 20640.0 1.0 1.0 53.5 326.75 27902.0
Fusobacterium nucleatum (SP56) 1.0 13.50 40.0 108.25 601.0 1.0 1.0 1.0 1.00 21.0
Granulicatella adiacens (SP46) 1.0 23.75 115.5 298.00 1004.0 1.0 1.0 1.0 6.00 82.0
Rothia mucilaginosa (SP391) 1.0 9.75 140.5 549.50 1920.0 1.0 1.0 1.0 6.25 49.0
Saccharibacteria_(TM7)_[G-1] bacterium HMT352 (SP75) 1.0 4.00 36.5 79.25 234.0 1.0 1.0 1.0 1.00 1.0
Streptococcus sp. HMT423 (SP4) 1.0 39.50 347.0 1107.25 4401.0 1.0 1.0 1.0 8.00 52.0
Neisseria sp. HMT020 nov_94.070% (SPN248) 1.0 9.25 20.0 78.25 699.0 1.0 1.0 1.0 1.00 46.0
Lautropia mirabilis (SP106) 3.0 11.00 23.5 56.50 326.0 1.0 1.0 1.0 1.00 32.0
Haemophilus pittmaniae (SP169) 1.0 25.25 61.5 135.00 370.0 1.0 1.0 1.0 1.00 166.0
Rothia dentocariosa (SP201) 1.0 5.00 30.5 127.25 191.0 1.0 1.0 1.0 1.00 34.0
Porphyromonas catoniae (SP15) 1.0 3.00 21.0 81.00 368.0 1.0 1.0 1.0 1.00 1.0
Streptococcus oralis_subsp._tigurinus_clade_071 (SP29) 1.0 1.00 16.5 66.00 497.0 1.0 1.0 1.0 1.00 1.0
Prevotella nanceiensis (SP25) 1.0 1.00 33.5 145.50 305.0 1.0 1.0 1.0 1.00 1.0
Gemella haemolysans (SP41) 1.0 1.00 28.0 203.50 1005.0 1.0 1.0 1.0 1.00 1.0
Solobacterium moorei (SP9) 1.0 1.00 10.0 102.75 355.0 1.0 1.0 1.0 1.00 1.0
Schaalia odontolytica (SP19) 1.0 1.00 54.0 252.50 506.0 1.0 1.0 1.0 1.00 18.0
Gemella morbillorum (SP8) 1.0 1.00 22.0 190.75 362.0 1.0 1.0 1.0 1.00 1.0
Neisseria sicca (SP614) 1.0 23.00 79.0 152.50 1177.0 1.0 1.0 1.0 1.00 61.0
Haemophilus haemolyticus_nov_97.947% (SPN447) 1.0 1.00 10.0 36.75 175.0 1.0 1.0 1.0 1.00 1.0
Neisseria oralis (SP198) 1.0 6.00 13.5 18.50 37.0 1.0 1.0 1.0 1.00 6.0
Streptococcus infantis_clade_431 (SP148) 1.0 1.00 19.5 53.00 202.0 1.0 1.0 1.0 1.00 1.0
Streptococcus gordonii (SP144) 1.0 1.00 37.0 149.25 711.0 1.0 1.0 1.0 1.00 128.0
Streptococcus oralis_subsp._dentisani_clade_058 (SP269) 1.0 1.00 12.5 45.25 133.0 1.0 1.0 1.0 1.00 9.0
Streptococcus oralis_subsp._tigurinus_clade_070 (SP82) 1.0 1.00 13.0 33.00 109.0 1.0 1.0 1.0 1.00 7.0
Alloprevotella sp. HMT308 (SP52) 1.0 1.00 6.5 26.25 135.0 1.0 1.0 1.0 1.00 1.0
Streptococcus mitis (SP249) 1.0 1.00 1.0 122.75 378.0 1.0 1.0 1.0 1.00 1.0
Granulicatella elegans (SP99) 1.0 1.00 8.5 22.25 62.0 1.0 1.0 1.0 1.00 1.0
Leptotrichia sp. HMT215 (SP40) 1.0 1.00 50.5 215.25 492.0 1.0 1.0 1.0 1.00 24.0
Fusobacterium sp. HMT204 (SP343) 1.0 1.00 11.0 24.00 74.0 1.0 1.0 1.0 1.00 1.0
Rothia aeria (SP621) 1.0 1.00 5.5 22.50 172.0 1.0 1.0 1.0 1.00 1.0
Streptococcus multispecies_spp29_2 (SPP29) 1.0 1.00 1.0 56.25 342.0 1.0 1.0 1.0 1.00 1.0
Prevotella salivae (SP47) 1.0 1.00 8.0 41.50 73.0 1.0 1.0 1.0 1.00 1.0
Streptococcus parasanguinis_clade_411 (SP88) 1.0 1.00 19.5 127.50 475.0 1.0 1.0 1.0 1.00 1.0
Kingella oralis (SP299) 1.0 4.00 14.0 43.25 179.0 1.0 1.0 1.0 1.00 139.0
Streptococcus salivarius (SP89) 1.0 31.25 183.5 755.25 4903.0 1.0 1.0 4.5 12.00 85.0
Streptococcus sp. HMT061 (SP366) 1.0 1.00 5.5 12.50 76.0 1.0 1.0 1.0 1.00 1.0
Streptococcus multispecies_spp53_2 (SPP53) 1.0 1.00 54.5 499.25 1969.0 1.0 1.0 1.0 1.00 54.0
Streptococcus australis (SP17) 1.0 1.00 7.0 87.75 309.0 1.0 1.0 1.0 1.00 6.0
Veillonella sp. HMT780 (SP60) 1.0 1.00 8.5 13.00 101.0 1.0 1.0 1.0 1.00 6.0
Streptococcus sp. HMT066 (SP246) 1.0 1.00 4.5 51.50 179.0 1.0 1.0 1.0 1.00 17.0
Saccharibacteria_(TM7)_[G-6] bacterium HMT870 (SP207) 1.0 1.00 5.0 10.00 26.0 1.0 1.0 1.0 1.00 1.0
Prevotella shahii (SP165) 1.0 1.00 3.5 27.00 91.0 1.0 1.0 1.0 1.00 1.0
Alloprevotella tannerae (SP315) 1.0 1.00 1.0 15.00 38.0 1.0 1.0 1.0 1.00 1.0
Prevotella jejuni (SP143) 1.0 1.00 3.5 16.75 63.0 1.0 1.0 1.0 1.00 1.0
Capnocytophaga sputigena (SP59) 1.0 1.00 4.5 17.50 42.0 1.0 1.0 1.0 1.00 1.0
Prevotella histicola (SP79) 1.0 1.00 2.0 18.25 50.0 1.0 1.0 1.0 1.00 1.0
Haemophilus paraphrohaemolyticus (SP291) 1.0 1.00 5.5 15.25 67.0 1.0 1.0 1.0 1.00 1.0
Fusobacterium hwasookii (SP127) 1.0 1.00 6.5 39.00 102.0 1.0 1.0 1.0 1.00 10.0
Saccharibacteria_(TM7)_[G-1] bacterium HMT348 (SP196) 1.0 1.00 4.5 20.25 47.0 1.0 1.0 1.0 1.00 1.0
Capnocytophaga endodontalis (SP67) 1.0 1.00 2.5 19.00 51.0 1.0 1.0 1.0 1.00 1.0
Campylobacter sp. HMT044 (SP348) 1.0 1.00 1.0 48.50 252.0 1.0 1.0 1.0 1.00 1.0
Schaalia sp. HMT180 (SP109) 1.0 1.00 1.5 26.50 61.0 1.0 1.0 1.0 1.00 1.0
Schaalia lingnae (SP49) 1.0 1.00 1.0 38.75 122.0 1.0 1.0 1.0 1.00 1.0
Stomatobaculum sp. HMT097 (SP5) 1.0 1.00 1.0 55.50 158.0 1.0 1.0 1.0 1.00 1.0
Capnocytophaga gingivalis (SP110) 1.0 1.00 1.0 30.25 72.0 1.0 1.0 1.0 1.00 5.0
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