QIIME 2

ANCOM Volcano Plot

ANCOM statistical results

W
Porphyromonas pasteri (SP34) 400
Klebsiella pneumoniae (SP63) 398
Citrobacter koseri (SP26) 395
Salmonella enterica (SP178) 395
Neisseria perflava (SP94) 395
Neisseria mucosa (SP346) 389
Campylobacter concisus (SP45) 388
Aggregatibacter segnis (SP111) 388
Prevotella melaninogenica (SP120) 388
Veillonella tobetsuensis (SP107) 387
Neisseria flava (SP53) 385
Neisseria elongata (SP145) 385
Neisseria subflava (SP200) 385
Campylobacter concisus_nov_96.963% (SPN15) 382
Veillonella atypica (SP35) 378
Aggregatibacter sp. HMT513 (SP252) 378
Haemophilus sputorum (SP371) 376
Haemophilus sp. HMT036 (SP188) 373
Aggregatibacter aphrophilus (SP84) 372
Eikenella corrodens (SP104) 371
Fusobacterium periodonticum (SP130) 370
Haemophilus parainfluenzae (SP14) 370
Aggregatibacter sp. HMT458 (SP136) 369
Gemella sanguinis (SP285) 369
Haemophilus haemolyticus (SP163) 365
Alloprevotella sp. HMT473 (SP181) 363
Veillonella multispecies_spp25_2 (SPP25) 360
Streptococcus oralis (SP80) 360
Veillonella parvula (SP2) 360
Neisseria flavescens (SP68) 359
Veillonella rogosae (SP90) 359
Veillonella dispar (SP3) 355
Campylobacter showae (SP265) 354
Neisseria sp. HMT020 nov_94.070% (SPN248) 348
Veillonella multispecies_spp6_3 (SPP6) 345
Saccharibacteria_(TM7)_[G-1] bacterium HMT352 (SP75) 341
Lautropia mirabilis (SP106) 339
Haemophilus pittmaniae (SP169) 335
Kingella oralis (SP299) 334
Prevotella nanceiensis (SP25) 332
Porphyromonas catoniae (SP15) 331
Streptococcus oralis_subsp._tigurinus_clade_071 (SP29) 330
Gemella morbillorum (SP8) 328
Neisseria oralis (SP198) 328
Gemella haemolysans (SP41) 327
Haemophilus haemolyticus_nov_97.947% (SPN447) 326
Solobacterium moorei (SP9) 319
Streptococcus oralis_subsp._tigurinus_clade_070 (SP82) 318
Streptococcus oralis_subsp._dentisani_clade_058 (SP269) 316
Fusobacterium sp. HMT204 (SP343) 311
Alloprevotella sp. HMT308 (SP52) 310
Prevotella salivae (SP47) 310
Fusobacterium nucleatum (SP56) 308
Veillonella sp. HMT780 (SP60) 306
Rothia dentocariosa (SP201) 305
Prevotella shahii (SP165) 301
Capnocytophaga sputigena (SP59) 301
Granulicatella elegans (SP99) 300
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Percentile abundances of features by group

Percentile 0.0 25.0 50.0 75.0 100.0 0.0 25.0 50.0 75.0 100.0
Group Baseline Baseline Baseline Baseline Baseline Final I +PMA Final I +PMA Final I +PMA Final I +PMA Final I +PMA
Porphyromonas pasteri (SP34) 262.0 583.00 1057.0 2492.25 6973.0 1.0 1.00 1.0 1.00 15.0
Klebsiella pneumoniae (SP63) 1.0 7.00 35.5 239.75 1996.0 1.0 1041.75 3190.0 19686.25 63037.0
Citrobacter koseri (SP26) 1.0 1.00 1.0 38.75 10239.0 1.0 1.00 21701.0 37693.00 68306.0
Salmonella enterica (SP178) 1.0 1.00 1.0 1.00 1771.0 1.0 1.00 3802.0 7040.75 12766.0
Neisseria perflava (SP94) 597.0 1052.25 1900.5 3494.75 9141.0 1.0 1.00 1.0 16.50 529.0
Neisseria mucosa (SP346) 1.0 350.50 695.5 1412.00 4662.0 1.0 1.00 1.0 1.00 241.0
Campylobacter concisus (SP45) 100.0 250.50 1074.5 2793.75 4310.0 1.0 1.00 1.0 2.50 500.0
Aggregatibacter segnis (SP111) 164.0 298.00 521.5 671.75 2236.0 1.0 1.00 1.0 1.00 28.0
Prevotella melaninogenica (SP120) 64.0 210.25 376.0 637.25 1229.0 1.0 1.00 1.0 1.00 31.0
Veillonella tobetsuensis (SP107) 76.0 115.75 135.0 212.75 588.0 1.0 1.00 1.0 1.00 31.0
Neisseria flava (SP53) 1555.0 3284.75 4634.0 9581.00 25086.0 1.0 1.00 21.5 92.25 1615.0
Neisseria elongata (SP145) 35.0 204.50 829.0 1804.25 4223.0 1.0 1.00 1.0 1.75 154.0
Neisseria subflava (SP200) 321.0 725.00 864.0 1114.00 2128.0 1.0 1.00 1.0 21.25 445.0
Campylobacter concisus_nov_96.963% (SPN15) 6.0 44.00 300.0 736.25 1159.0 1.0 1.00 1.0 1.00 25.0
Veillonella atypica (SP35) 39.0 523.00 974.0 2635.50 5770.0 1.0 1.00 1.0 45.00 470.0
Aggregatibacter sp. HMT513 (SP252) 1.0 80.00 139.5 182.25 393.0 1.0 1.00 1.0 1.00 9.0
Haemophilus sputorum (SP371) 1.0 42.75 152.5 430.50 1717.0 1.0 1.00 1.0 1.00 1.0
Haemophilus sp. HMT036 (SP188) 1.0 21.75 69.5 160.50 413.0 1.0 1.00 1.0 1.00 1.0
Aggregatibacter aphrophilus (SP84) 1.0 66.50 139.0 325.50 1695.0 1.0 1.00 1.0 1.00 71.0
Eikenella corrodens (SP104) 93.0 179.25 228.0 378.75 778.0 1.0 1.00 1.0 10.50 603.0
Fusobacterium periodonticum (SP130) 14.0 151.25 661.0 2033.25 6726.0 1.0 1.00 1.0 20.75 527.0
Haemophilus parainfluenzae (SP14) 5256.0 9419.00 11578.5 15599.75 27948.0 1.0 6.25 214.0 1124.50 34247.0
Aggregatibacter sp. HMT458 (SP136) 12.0 32.00 54.0 100.25 444.0 1.0 1.00 1.0 1.00 1.0
Gemella sanguinis (SP285) 1.0 13.75 105.5 421.50 721.0 1.0 1.00 1.0 1.00 42.0
Haemophilus haemolyticus (SP163) 1.0 13.00 36.0 82.25 276.0 1.0 1.00 1.0 1.00 1.0
Alloprevotella sp. HMT473 (SP181) 1.0 16.00 51.0 95.25 302.0 1.0 1.00 1.0 1.00 1.0
Veillonella multispecies_spp25_2 (SPP25) 1955.0 3375.00 5267.0 9121.75 14514.0 1.0 1.00 99.5 800.00 12838.0
Streptococcus oralis (SP80) 1.0 40.25 113.0 185.00 782.0 1.0 1.00 1.0 1.00 249.0
Veillonella parvula (SP2) 559.0 864.25 1259.5 1920.75 3042.0 1.0 1.00 1.0 403.50 2003.0
Neisseria flavescens (SP68) 586.0 2918.50 3827.0 6820.00 20640.0 1.0 34.00 129.0 340.00 2432.0
Veillonella rogosae (SP90) 344.0 1300.00 2825.0 3680.25 10720.0 1.0 1.00 39.5 389.00 14135.0
Veillonella dispar (SP3) 68.0 246.50 389.5 565.25 1607.0 1.0 1.00 1.0 141.25 738.0
Campylobacter showae (SP265) 1.0 16.75 67.0 210.00 345.0 1.0 1.00 1.0 1.00 42.0
Neisseria sp. HMT020 nov_94.070% (SPN248) 1.0 9.25 20.0 78.25 699.0 1.0 1.00 1.0 1.00 1.0
Veillonella multispecies_spp6_3 (SPP6) 126.0 340.00 467.0 588.75 1607.0 1.0 1.00 7.5 174.75 2097.0
Saccharibacteria_(TM7)_[G-1] bacterium HMT352 (SP75) 1.0 4.00 36.5 79.25 234.0 1.0 1.00 1.0 1.00 21.0
Lautropia mirabilis (SP106) 3.0 11.00 23.5 56.50 326.0 1.0 1.00 1.0 1.00 247.0
Haemophilus pittmaniae (SP169) 1.0 25.25 61.5 135.00 370.0 1.0 1.00 1.0 1.00 22.0
Kingella oralis (SP299) 1.0 4.00 14.0 43.25 179.0 1.0 1.00 1.0 1.00 1.0
Prevotella nanceiensis (SP25) 1.0 1.00 33.5 145.50 305.0 1.0 1.00 1.0 1.00 8.0
Porphyromonas catoniae (SP15) 1.0 3.00 21.0 81.00 368.0 1.0 1.00 1.0 1.00 1.0
Streptococcus oralis_subsp._tigurinus_clade_071 (SP29) 1.0 1.00 16.5 66.00 497.0 1.0 1.00 1.0 1.00 1.0
Gemella morbillorum (SP8) 1.0 1.00 22.0 190.75 362.0 1.0 1.00 1.0 1.00 5.0
Neisseria oralis (SP198) 1.0 6.00 13.5 18.50 37.0 1.0 1.00 1.0 1.00 1.0
Gemella haemolysans (SP41) 1.0 1.00 28.0 203.50 1005.0 1.0 1.00 1.0 1.00 6.0
Haemophilus haemolyticus_nov_97.947% (SPN447) 1.0 1.00 10.0 36.75 175.0 1.0 1.00 1.0 1.00 1.0
Solobacterium moorei (SP9) 1.0 1.00 10.0 102.75 355.0 1.0 1.00 1.0 1.00 4.0
Streptococcus oralis_subsp._tigurinus_clade_070 (SP82) 1.0 1.00 13.0 33.00 109.0 1.0 1.00 1.0 1.00 12.0
Streptococcus oralis_subsp._dentisani_clade_058 (SP269) 1.0 1.00 12.5 45.25 133.0 1.0 1.00 1.0 1.00 5.0
Fusobacterium sp. HMT204 (SP343) 1.0 1.00 11.0 24.00 74.0 1.0 1.00 1.0 1.00 1.0
Alloprevotella sp. HMT308 (SP52) 1.0 1.00 6.5 26.25 135.0 1.0 1.00 1.0 1.00 1.0
Prevotella salivae (SP47) 1.0 1.00 8.0 41.50 73.0 1.0 1.00 1.0 1.00 1.0
Fusobacterium nucleatum (SP56) 1.0 13.50 40.0 108.25 601.0 1.0 1.00 1.0 4.50 645.0
Veillonella sp. HMT780 (SP60) 1.0 1.00 8.5 13.00 101.0 1.0 1.00 1.0 1.00 1.0
Rothia dentocariosa (SP201) 1.0 5.00 30.5 127.25 191.0 1.0 1.00 1.0 5.75 98.0
Prevotella shahii (SP165) 1.0 1.00 3.5 27.00 91.0 1.0 1.00 1.0 1.00 1.0
Capnocytophaga sputigena (SP59) 1.0 1.00 4.5 17.50 42.0 1.0 1.00 1.0 1.00 1.0
Granulicatella elegans (SP99) 1.0 1.00 8.5 22.25 62.0 1.0 1.00 1.0 1.00 1.0
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