QIIME 2

ANCOM Volcano Plot

ANCOM statistical results

W
Neisseria mucosa (SP346) 399
Neisseria elongata (SP145) 396
Streptococcus sanguinis (SP179) 395
Streptococcus gordonii (SP144) 395
Streptococcus parasanguinis_clade_411 (SP88) 391
Streptococcus sp. HMT423 (SP4) 388
Prevotella nanceiensis (SP25) 379
Porphyromonas pasteri (SP34) 377
Lautropia mirabilis (SP106) 377
Streptococcus multispecies_spp53_2 (SPP53) 375
Neisseria flava (SP53) 374
Schaalia odontolytica (SP19) 365
Streptococcus sp. HMT066 (SP246) 365
Granulicatella adiacens (SP46) 361
Streptococcus sanguinis_nov_97.782% (SPN62) 361
Streptococcus cristatus_clade_578 (SP24) 361
Neisseria sicca (SP614) 361
Schaalia sp. HMT180 (SP109) 359
Streptococcus australis (SP17) 355
Alloprevotella sp. HMT473 (SP181) 354
Aggregatibacter sp. HMT458 (SP136) 353
Schaalia sp. HMT172 (SP57) 353
Haemophilus sputorum (SP371) 349
Neisseria perflava (SP94) 347
Actinomyces sp. HMT175 (SP205) 343
Leptotrichia sp. HMT215 (SP40) 338
Kingella oralis (SP299) 337
Prevotella salivae (SP47) 337
Actinomyces sp. HMT175 nov_97.951% (SPN283) 336
Haemophilus sp. HMT036 (SP188) 336
Porphyromonas catoniae (SP15) 332
Veillonella rogosae (SP90) 330
Aggregatibacter segnis (SP111) 330
Haemophilus haemolyticus_nov_97.947% (SPN447) 329
Campylobacter concisus_nov_96.963% (SPN15) 328
Campylobacter sp. HMT044 (SP348) 323
Neisseria sp. HMT020 nov_94.070% (SPN248) 320
Alloprevotella sp. HMT308 (SP52) 319
Capnocytophaga sputigena (SP59) 318
Streptococcus sp. HMT057 (SP103) 315
Capnocytophaga gingivalis (SP110) 315
Prevotella shahii (SP165) 313
Saccharibacteria_(TM7)_[G-1] bacterium HMT348 (SP196) 313
Capnocytophaga endodontalis (SP67) 313
Alloprevotella tannerae (SP315) 312
Streptococcus intermedius (SP186) 307
Absconditabacteria_(SR1)_[G-1] bacterium HMT875 (SP553) 301
Prevotella pallens (SP76) 301
Veillonella dispar (SP3) 300
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Percentile abundances of features by group

Percentile 0.0 25.0 50.0 75.0 100.0 0.0 25.0 50.0 75.0 100.0
Group Baseline Baseline Baseline Baseline Baseline Final A -PMA Final A -PMA Final A -PMA Final A -PMA Final A -PMA
Neisseria mucosa (SP346) 1.0 350.50 695.5 1412.00 4662.0 1.0 1.00 1.0 54.00 153.0
Neisseria elongata (SP145) 35.0 204.50 829.0 1804.25 4223.0 1.0 7.50 27.5 52.25 140.0
Streptococcus sanguinis (SP179) 1.0 1.00 48.5 245.75 534.0 373.0 584.50 1161.0 1661.75 8884.0
Streptococcus gordonii (SP144) 1.0 1.00 37.0 149.25 711.0 357.0 595.75 785.0 1066.75 4373.0
Streptococcus parasanguinis_clade_411 (SP88) 1.0 1.00 19.5 127.50 475.0 1.0 439.75 511.5 634.00 1035.0
Streptococcus sp. HMT423 (SP4) 1.0 39.50 347.0 1107.25 4401.0 1034.0 1635.75 4202.0 6424.50 37637.0
Prevotella nanceiensis (SP25) 1.0 1.00 33.5 145.50 305.0 1.0 1.00 1.0 1.00 4.0
Porphyromonas pasteri (SP34) 262.0 583.00 1057.0 2492.25 6973.0 1.0 86.00 157.0 283.75 528.0
Lautropia mirabilis (SP106) 3.0 11.00 23.5 56.50 326.0 1.0 1.00 1.0 3.00 15.0
Streptococcus multispecies_spp53_2 (SPP53) 1.0 1.00 54.5 499.25 1969.0 1.0 816.00 1635.5 2422.75 3222.0
Neisseria flava (SP53) 1555.0 3284.75 4634.0 9581.00 25086.0 1.0 161.50 698.0 1229.50 2804.0
Schaalia odontolytica (SP19) 1.0 1.00 54.0 252.50 506.0 39.0 173.50 247.5 342.75 470.0
Streptococcus sp. HMT066 (SP246) 1.0 1.00 4.5 51.50 179.0 1.0 82.00 121.5 140.25 260.0
Granulicatella adiacens (SP46) 1.0 23.75 115.5 298.00 1004.0 7.0 644.00 770.5 897.75 1546.0
Streptococcus sanguinis_nov_97.782% (SPN62) 1.0 1.00 1.0 6.25 17.0 1.0 12.75 17.5 28.00 208.0
Streptococcus cristatus_clade_578 (SP24) 1.0 1.00 4.0 31.00 361.0 1.0 58.25 77.5 142.50 254.0
Neisseria sicca (SP614) 1.0 23.00 79.0 152.50 1177.0 1.0 1.00 1.0 1.00 78.0
Schaalia sp. HMT180 (SP109) 1.0 1.00 1.5 26.50 61.0 1.0 21.50 43.5 67.25 119.0
Streptococcus australis (SP17) 1.0 1.00 7.0 87.75 309.0 1.0 100.75 151.0 193.50 302.0
Alloprevotella sp. HMT473 (SP181) 1.0 16.00 51.0 95.25 302.0 1.0 1.00 5.0 19.00 81.0
Aggregatibacter sp. HMT458 (SP136) 12.0 32.00 54.0 100.25 444.0 1.0 1.00 13.0 23.25 40.0
Schaalia sp. HMT172 (SP57) 1.0 1.00 3.5 21.75 61.0 1.0 21.50 36.5 56.25 104.0
Haemophilus sputorum (SP371) 1.0 42.75 152.5 430.50 1717.0 1.0 4.75 14.0 23.50 92.0
Neisseria perflava (SP94) 597.0 1052.25 1900.5 3494.75 9141.0 1.0 168.00 503.0 792.25 2488.0
Actinomyces sp. HMT175 (SP205) 1.0 1.00 1.0 19.00 40.0 1.0 18.50 26.5 47.00 363.0
Leptotrichia sp. HMT215 (SP40) 1.0 1.00 50.5 215.25 492.0 1.0 112.75 218.5 582.50 1058.0
Kingella oralis (SP299) 1.0 4.00 14.0 43.25 179.0 1.0 1.00 1.0 3.00 9.0
Prevotella salivae (SP47) 1.0 1.00 8.0 41.50 73.0 1.0 1.00 1.0 1.00 5.0
Actinomyces sp. HMT175 nov_97.951% (SPN283) 1.0 1.00 1.0 1.00 20.0 1.0 1.00 13.0 21.00 157.0
Haemophilus sp. HMT036 (SP188) 1.0 21.75 69.5 160.50 413.0 1.0 1.75 14.0 26.50 81.0
Porphyromonas catoniae (SP15) 1.0 3.00 21.0 81.00 368.0 1.0 1.00 1.0 2.00 32.0
Veillonella rogosae (SP90) 344.0 1300.00 2825.0 3680.25 10720.0 35.0 459.00 609.0 929.25 1336.0
Aggregatibacter segnis (SP111) 164.0 298.00 521.5 671.75 2236.0 1.0 79.50 129.0 212.00 747.0
Haemophilus haemolyticus_nov_97.947% (SPN447) 1.0 1.00 10.0 36.75 175.0 1.0 1.00 1.0 2.25 13.0
Campylobacter concisus_nov_96.963% (SPN15) 6.0 44.00 300.0 736.25 1159.0 1.0 26.75 46.5 65.25 90.0
Campylobacter sp. HMT044 (SP348) 1.0 1.00 1.0 48.50 252.0 1.0 1.00 1.0 1.00 1.0
Neisseria sp. HMT020 nov_94.070% (SPN248) 1.0 9.25 20.0 78.25 699.0 1.0 1.00 1.0 9.50 62.0
Alloprevotella sp. HMT308 (SP52) 1.0 1.00 6.5 26.25 135.0 1.0 1.00 1.0 1.00 6.0
Capnocytophaga sputigena (SP59) 1.0 1.00 4.5 17.50 42.0 1.0 1.00 1.0 1.00 1.0
Streptococcus sp. HMT057 (SP103) 1.0 1.00 1.0 10.25 59.0 1.0 1.00 24.5 38.25 54.0
Capnocytophaga gingivalis (SP110) 1.0 1.00 1.0 30.25 72.0 1.0 1.00 1.0 1.00 1.0
Prevotella shahii (SP165) 1.0 1.00 3.5 27.00 91.0 1.0 1.00 1.0 1.00 5.0
Saccharibacteria_(TM7)_[G-1] bacterium HMT348 (SP196) 1.0 1.00 4.5 20.25 47.0 1.0 1.00 1.0 1.00 1.0
Capnocytophaga endodontalis (SP67) 1.0 1.00 2.5 19.00 51.0 1.0 1.00 1.0 1.00 3.0
Alloprevotella tannerae (SP315) 1.0 1.00 1.0 15.00 38.0 1.0 1.00 1.0 1.00 1.0
Streptococcus intermedius (SP186) 1.0 1.00 1.0 1.00 9.0 1.0 1.00 3.0 8.25 22.0
Absconditabacteria_(SR1)_[G-1] bacterium HMT875 (SP553) 1.0 1.00 1.0 20.50 77.0 1.0 1.00 1.0 1.00 1.0
Prevotella pallens (SP76) 1.0 1.00 1.0 24.75 87.0 1.0 1.00 1.0 1.00 1.0
Veillonella dispar (SP3) 68.0 246.50 389.5 565.25 1607.0 1.0 114.00 133.0 188.50 359.0
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