Paired difference tests
Metric Difference in observed_features (Day 29 - Day 1)
Group column Treatment
State column Day
State 1 1
State 2 29
Individual ID column Subject_ID
Parametric False
Replicates handling random

Pairwise difference boxplot

Pairwise difference tests

W (wilcoxon signed-rank test) P-value FDR P-value
Group
MTB 128.5 1.313287e-03 1.313287e-03
SIM 0.0 3.649257e-07 7.298515e-07

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Multiple group tests

H P value
Kruskal Wallis test 23.116291 0.000002

Pairwise group comparison tests

Mann-Whitney U P-value FDR P-value
Group A Group B
SIM MTB 212.0 0.000002 0.000002

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