FOMC Service Report

16S rRNA Gene V1V3 Amplicon Sequencing

Version V1.52

Version History

The Forsyth Institute, Cambridge, MA, USA
February 22, 2026

Project ID: OLP_3


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I. Project Summary

Project OLP_3 services include NGS sequencing of the V1V3 region of the 16S rRNA gene amplicons from the samples. First and foremost, please download this report, as well as the sequence raw data from the download links provided below. These links will expire after 60 days. We cannot guarantee the availability of your data after 60 days.

Full Bioinformatics analysis service was requested. We provide many analyses, starting from the raw sequence quality and noise filtering, pair reads merging, as well as chimera filtering for the sequences, using the DADA2 denosing algorithm and pipeline.

We also provide many downstream analyses such as taxonomy assignment, alpha and beta diversity analyses, and differential abundance analysis.

For taxonomy assignment, most informative would be the taxonomy barplots. We provide an interactive barplots to show the relative abundance of microbes at different taxonomy levels (from Phylum to species) that you can choose.

If you specify which groups of samples you want to compare for differential abundance, we provide both ANCOM and LEfSe differential abundance analysis.

 

II. Workflow Checklist

1.Sample Received
2.Sample Quality Evaluated
3.Sample Prepared for Sequencing
4.Next-Gen Sequencing
5.Sequence Quality Check
6.Absolute Abundance
7.Report and Raw Sequence Data Available for Download
8.Bioinformatics Analysis - Reads Processing (DADA2 Quality Trimming, Denoising, Paired Reads Merging)
9.Bioinformatics Analysis - Reads Taxonomy Assignment
10.Bioinformatics Analysis - Alpha Diversity Analysis
11.Bioinformatics Analysis - Beta Diversity Analysis
12.Bioinformatics Analysis - Differential Abundance Analysis
13.Bioinformatics Analysis - Heatmap Profile
14.Bioinformatics Analysis - Network Association
 

III. NGS Sequencing

The samples were processed and analyzed with the ZymoBIOMICS® Service: Targeted Metagenomic Sequencing (Zymo Research, Irvine, CA).

DNA Extraction: If DNA extraction was performed, the following DNA extraction kit was used according to the manufacturer’s instructions:

ZymoBIOMICS®-96 MagBead DNA Kit (Zymo Research, Irvine, CA)
N/A (DNA Extraction Not Performed)
Elution Volume: 50µL
Additional Notes: NA

Targeted Library Preparation: The DNA samples were prepared for targeted sequencing with the Quick-16S™ NGS Library Prep Kit (Zymo Research, Irvine, CA). These primers were custom designed by Zymo Research to provide the best coverage of the 16S gene while maintaining high sensitivity. The primer sets used in this project are marked below:

Quick-16S™ Primer Set V1-V2 (Zymo Research, Irvine, CA)
Quick-16S™ Primer Set V1-V3 (Zymo Research, Irvine, CA)
Quick-16S™ Primer Set V3-V4 (Zymo Research, Irvine, CA)
Quick-16S™ Primer Set V4 (Zymo Research, Irvine, CA)
Quick-16S™ Primer Set V6-V8 (Zymo Research, Irvine, CA)
Additional Notes: NA

The sequencing library was prepared using an innovative library preparation process in which PCR reactions were performed in real-time PCR machines to control cycles and therefore limit PCR chimera formation. The final PCR products were quantified with qPCR fluorescence readings and pooled together based on equal molarity. The final pooled library was cleaned up with the Select-a-Size DNA Clean & Concentrator™ (Zymo Research, Irvine, CA), then quantified with TapeStation® (Agilent Technologies, Santa Clara, CA) and Qubit® (Thermo Fisher Scientific, Waltham, WA).

Control Samples: The ZymoBIOMICS® Microbial Community Standard (Zymo Research, Irvine, CA) was used as a positive control for each DNA extraction, if performed. The ZymoBIOMICS® Microbial Community DNA Standard (Zymo Research, Irvine, CA) was used as a positive control for each targeted library preparation. Negative controls (i.e. blank extraction control, blank library preparation control) were included to assess the level of bioburden carried by the wet-lab process.

Sequencing: The final library was sequenced on Illumina® NextSeq 2000™ with a p1 (Illumina, Sand Diego, CA) reagent kit (600 cycles). The sequencing was performed with 25% PhiX spike-in.

Absolute Abundance Quantification*: A quantitative real-time PCR was set up with a standard curve. The standard curve was made with plasmid DNA containing one copy of the 16S gene and one copy of the fungal ITS2 region prepared in 10-fold serial dilutions. The primers used were the same as those used in Targeted Library Preparation. The equation generated by the plasmid DNA standard curve was used to calculate the number of gene copies in the reaction for each sample. The PCR input volume (2 µl) was used to calculate the number of gene copies per microliter in each DNA sample.
The number of genome copies per microliter DNA sample was calculated by dividing the gene copy number by an assumed number of gene copies per genome. The value used for 16S copies per genome is 4. The value used for ITS copies per genome is 200. The amount of DNA per microliter DNA sample was calculated using an assumed genome size of 4.64 x 106 bp, the genome size of Escherichia coli, for 16S samples, or an assumed genome size of 1.20 x 107 bp, the genome size of Saccharomyces cerevisiae, for ITS samples. This calculation is shown below:

Calculated Total DNA = Calculated Total Genome Copies × Assumed Genome Size (4.64 × 106 bp) ×
Average Molecular Weight of a DNA bp (660 g/mole/bp) ÷ Avogadro’s Number (6.022 x 1023/mole)


* Absolute Abundance Quantification is only available for 16S and ITS analyses.

The absolute abundance standard curve data can be viewed in Excel here:

The absolute abundance standard curve is shown below:

Absolute Abundance Standard Curve

 

IV. Complete Report Download

The complete report of your project, including all links in this report, can be downloaded by clicking the link provided below. The downloaded file is a compressed ZIP file and once unzipped, open the file “REPORT.html” (may only shown as "REPORT" in your computer) by double clicking it. Your default web browser will open it and you will see the exact content of this report.

Please download and save the file to your computer storage device. The download link will expire after 60 days upon your receiving of this report.

Complete report download link:

To view the report, please follow the following steps:

1.Download the .zip file from the report link above.
2.Extract all the contents of the downloaded .zip file to your desktop.
3.Open the extracted folder and find the "REPORT.html" (may shown as only "REPORT").
4.Open (double-clicking) the REPORT.html file. Your default browser will open the top age of the complete report. Within the report, there are links to view all the analyses performed for the project.

 

V. Raw Sequence Data Download

The raw NGS sequence data is available for download with the link provided below. The data is a compressed ZIP file and can be unzipped to individual sequence files. Since this is a Pac-Bio full-length (V1V9) 16S rRNA amplicon sequencing, raw sequences are available for download in a single compressed zip file in the download link below. After unzipping, you will find individual sequence files for each of your samples with the file extension “*.fastq.gz”. The files are in FASTQ format and are compressed. FASTQ format is a text-based data format for storing both a biological sequence and its corresponding quality scores. Most sequence analysis software will be able to open them. The Sample IDs associated with the fastq files are listed in the table below:

Sample IDOriginal Sample IDRead 1 File NameRead 2 File Name
F73312.S01fastq_ori/ERR12711800_1.fastqfastq_ori/ERR12711800_2.fastq
F73312.S02fastq_ori/ERR12711803_1.fastqfastq_ori/ERR12711803_2.fastq
F73312.S03fastq_ori/ERR12711807_1.fastqfastq_ori/ERR12711807_2.fastq
F73312.S04fastq_ori/ERR12711813_1.fastqfastq_ori/ERR12711813_2.fastq
F73312.S05fastq_ori/ERR12711900_1.fastqfastq_ori/ERR12711900_2.fastq
F73312.S06fastq_ori/ERR12711905_1.fastqfastq_ori/ERR12711905_2.fastq
F73312.S07fastq_ori/ERR12712136_1.fastqfastq_ori/ERR12712136_2.fastq
F73312.S08fastq_ori/ERR12712138_1.fastqfastq_ori/ERR12712138_2.fastq
F73312.S09fastq_ori/ERR12712141_1.fastqfastq_ori/ERR12712141_2.fastq
F73312.S10fastq_ori/ERR12712145_1.fastqfastq_ori/ERR12712145_2.fastq
F73312.S11fastq_ori/ERR12712151_1.fastqfastq_ori/ERR12712151_2.fastq
F73312.S12fastq_ori/ERR12712157_1.fastqfastq_ori/ERR12712157_2.fastq
F73312.S13fastq_ori/ERR12712160_1.fastqfastq_ori/ERR12712160_2.fastq
F73312.S14fastq_ori/ERR12712164_1.fastqfastq_ori/ERR12712164_2.fastq
F73312.S15fastq_ori/ERR12712167_1.fastqfastq_ori/ERR12712167_2.fastq
F73312.S16fastq_ori/ERR12712183_1.fastqfastq_ori/ERR12712183_2.fastq
F73312.S17fastq_ori/ERR12712184_1.fastqfastq_ori/ERR12712184_2.fastq
F73312.S18fastq_ori/ERR12712190_1.fastqfastq_ori/ERR12712190_2.fastq
F73312.S19fastq_ori/ERR12712191_1.fastqfastq_ori/ERR12712191_2.fastq
F73312.S20fastq_ori/ERR12712192_1.fastqfastq_ori/ERR12712192_2.fastq
F73312.S21fastq_ori/ERR12712193_1.fastqfastq_ori/ERR12712193_2.fastq
F73312.S22fastq_ori/ERR12712194_1.fastqfastq_ori/ERR12712194_2.fastq
F73312.S23fastq_ori/ERR12712195_1.fastqfastq_ori/ERR12712195_2.fastq
F73312.S24fastq_ori/ERR12712196_1.fastqfastq_ori/ERR12712196_2.fastq
F73312.S25fastq_ori/ERR12712197_1.fastqfastq_ori/ERR12712197_2.fastq
F73312.S26fastq_ori/ERR12712198_1.fastqfastq_ori/ERR12712198_2.fastq
F73312.S27fastq_ori/ERR12712199_1.fastqfastq_ori/ERR12712199_2.fastq
F73312.S28fastq_ori/ERR12712200_1.fastqfastq_ori/ERR12712200_2.fastq
F73312.S29fastq_ori/ERR12712201_1.fastqfastq_ori/ERR12712201_2.fastq
F73312.S30fastq_ori/ERR12712202_1.fastqfastq_ori/ERR12712202_2.fastq
F73312.S31fastq_ori/ERR12712203_1.fastqfastq_ori/ERR12712203_2.fastq
F73312.S32fastq_ori/ERR12712204_1.fastqfastq_ori/ERR12712204_2.fastq
F73312.S33fastq_ori/ERR12712205_1.fastqfastq_ori/ERR12712205_2.fastq
F73312.S34fastq_ori/ERR12712206_1.fastqfastq_ori/ERR12712206_2.fastq
F73312.S35fastq_ori/ERR12712207_1.fastqfastq_ori/ERR12712207_2.fastq
F73312.S36fastq_ori/ERR12712208_1.fastqfastq_ori/ERR12712208_2.fastq
F73312.S37fastq_ori/ERR12712209_1.fastqfastq_ori/ERR12712209_2.fastq
F73312.S38fastq_ori/ERR12712210_1.fastqfastq_ori/ERR12712210_2.fastq
F73312.S39fastq_ori/ERR12712211_1.fastqfastq_ori/ERR12712211_2.fastq
F73312.S40fastq_ori/ERR12712212_1.fastqfastq_ori/ERR12712212_2.fastq
F73312.S41fastq_ori/ERR12712213_1.fastqfastq_ori/ERR12712213_2.fastq
F73312.S42fastq_ori/ERR12712214_1.fastqfastq_ori/ERR12712214_2.fastq
F73312.S43fastq_ori/ERR12712215_1.fastqfastq_ori/ERR12712215_2.fastq
F73312.S44fastq_ori/ERR12712216_1.fastqfastq_ori/ERR12712216_2.fastq
F73312.S45fastq_ori/ERR12712217_1.fastqfastq_ori/ERR12712217_2.fastq
F73312.S46fastq_ori/ERR12712218_1.fastqfastq_ori/ERR12712218_2.fastq
F73312.S47fastq_ori/ERR12712219_1.fastqfastq_ori/ERR12712219_2.fastq
F73312.S48fastq_ori/ERR12712220_1.fastqfastq_ori/ERR12712220_2.fastq
F73312.S49fastq_ori/ERR12712221_1.fastqfastq_ori/ERR12712221_2.fastq
F73312.S50fastq_ori/ERR12712222_1.fastqfastq_ori/ERR12712222_2.fastq
F73312.S51fastq_ori/ERR12712223_1.fastqfastq_ori/ERR12712223_2.fastq
F73312.S52fastq_ori/ERR12712224_1.fastqfastq_ori/ERR12712224_2.fastq
F73312.S53fastq_ori/ERR12712225_1.fastqfastq_ori/ERR12712225_2.fastq
F73312.S54fastq_ori/ERR12712226_1.fastqfastq_ori/ERR12712226_2.fastq
F73312.S55fastq_ori/ERR12712227_1.fastqfastq_ori/ERR12712227_2.fastq
F73312.S56fastq_ori/ERR12712228_1.fastqfastq_ori/ERR12712228_2.fastq
F73312.S57fastq_ori/ERR12712229_1.fastqfastq_ori/ERR12712229_2.fastq
F73312.S58fastq_ori/ERR12712230_1.fastqfastq_ori/ERR12712230_2.fastq
F73312.S59fastq_ori/ERR12712231_1.fastqfastq_ori/ERR12712231_2.fastq
F73312.S60fastq_ori/ERR12712232_1.fastqfastq_ori/ERR12712232_2.fastq
F73312.S61fastq_ori/ERR12712233_1.fastqfastq_ori/ERR12712233_2.fastq
F73312.S62fastq_ori/ERR12712234_1.fastqfastq_ori/ERR12712234_2.fastq
F73312.S63fastq_ori/ERR12712235_1.fastqfastq_ori/ERR12712235_2.fastq
F73312.S64fastq_ori/ERR12712236_1.fastqfastq_ori/ERR12712236_2.fastq
F73312.S65fastq_ori/ERR12712237_1.fastqfastq_ori/ERR12712237_2.fastq
F73312.S66fastq_ori/ERR12712238_1.fastqfastq_ori/ERR12712238_2.fastq
F73312.S67fastq_ori/ERR12712239_1.fastqfastq_ori/ERR12712239_2.fastq
F73312.S68fastq_ori/ERR12712240_1.fastqfastq_ori/ERR12712240_2.fastq
F73312.S69fastq_ori/ERR12712241_1.fastqfastq_ori/ERR12712241_2.fastq
F73312.S70fastq_ori/ERR12712242_1.fastqfastq_ori/ERR12712242_2.fastq
F73312.S71fastq_ori/ERR12712243_1.fastqfastq_ori/ERR12712243_2.fastq
F73312.S72fastq_ori/ERR12712244_1.fastqfastq_ori/ERR12712244_2.fastq
F73312.S73fastq_ori/ERR12712245_1.fastqfastq_ori/ERR12712245_2.fastq
F73312.S74fastq_ori/ERR12712246_1.fastqfastq_ori/ERR12712246_2.fastq
F73312.S75fastq_ori/ERR12712247_1.fastqfastq_ori/ERR12712247_2.fastq
F73312.S76fastq_ori/ERR12712248_1.fastqfastq_ori/ERR12712248_2.fastq
F73312.S77fastq_ori/ERR12712249_1.fastqfastq_ori/ERR12712249_2.fastq
F73312.S78fastq_ori/ERR12712250_1.fastqfastq_ori/ERR12712250_2.fastq
F73312.S79fastq_ori/ERR12712251_1.fastqfastq_ori/ERR12712251_2.fastq
F73312.S80fastq_ori/ERR12712252_1.fastqfastq_ori/ERR12712252_2.fastq
F73312.S81fastq_ori/ERR12712253_1.fastqfastq_ori/ERR12712253_2.fastq
F73312.S82fastq_ori/ERR12712254_1.fastqfastq_ori/ERR12712254_2.fastq
F73312.S83fastq_ori/ERR12712255_1.fastqfastq_ori/ERR12712255_2.fastq
F73312.S84fastq_ori/ERR12712256_1.fastqfastq_ori/ERR12712256_2.fastq
F73312.S85fastq_ori/ERR12712257_1.fastqfastq_ori/ERR12712257_2.fastq
F73312.S86fastq_ori/ERR12712258_1.fastqfastq_ori/ERR12712258_2.fastq
F73312.S87fastq_ori/ERR12712259_1.fastqfastq_ori/ERR12712259_2.fastq
F1043432.S01fastq_ori/SRR26896019_1.fastqfastq_ori/SRR26896019_2.fastq
F1043432.S02fastq_ori/SRR26896030_1.fastqfastq_ori/SRR26896030_2.fastq
F1043432.S03fastq_ori/SRR26896041_1.fastqfastq_ori/SRR26896041_2.fastq
F1043432.S04fastq_ori/SRR26896052_1.fastqfastq_ori/SRR26896052_2.fastq
F1043432.S05fastq_ori/SRR26896054_1.fastqfastq_ori/SRR26896054_2.fastq
F1043432.S06fastq_ori/SRR26896055_1.fastqfastq_ori/SRR26896055_2.fastq
F1043432.S07fastq_ori/SRR26896056_1.fastqfastq_ori/SRR26896056_2.fastq
F1043432.S08fastq_ori/SRR26896057_1.fastqfastq_ori/SRR26896057_2.fastq
F1043432.S09fastq_ori/SRR26896058_1.fastqfastq_ori/SRR26896058_2.fastq
F1043432.S10fastq_ori/SRR26896059_1.fastqfastq_ori/SRR26896059_2.fastq
F1043432.S11fastq_ori/SRR26896060_1.fastqfastq_ori/SRR26896060_2.fastq
F1043432.S12fastq_ori/SRR26896061_1.fastqfastq_ori/SRR26896061_2.fastq
F1043432.S13fastq_ori/SRR26896062_1.fastqfastq_ori/SRR26896062_2.fastq
F1043432.S14fastq_ori/SRR26896063_1.fastqfastq_ori/SRR26896063_2.fastq
F1043432.S15fastq_ori/SRR26896064_1.fastqfastq_ori/SRR26896064_2.fastq
F1043432.S16fastq_ori/SRR26896065_1.fastqfastq_ori/SRR26896065_2.fastq
F1043432.S17fastq_ori/SRR26896066_1.fastqfastq_ori/SRR26896066_2.fastq
F1043432.S18fastq_ori/SRR26896067_1.fastqfastq_ori/SRR26896067_2.fastq
F1043432.S19fastq_ori/SRR26896068_1.fastqfastq_ori/SRR26896068_2.fastq
F1043432.S20fastq_ori/SRR26896069_1.fastqfastq_ori/SRR26896069_2.fastq
F1043432.S21fastq_ori/SRR26896070_1.fastqfastq_ori/SRR26896070_2.fastq
F1043432.S22fastq_ori/SRR26896071_1.fastqfastq_ori/SRR26896071_2.fastq
F1043432.S23fastq_ori/SRR26896072_1.fastqfastq_ori/SRR26896072_2.fastq
F1043432.S24fastq_ori/SRR26896073_1.fastqfastq_ori/SRR26896073_2.fastq
F1043432.S25fastq_ori/SRR26896074_1.fastqfastq_ori/SRR26896074_2.fastq
F1043432.S26fastq_ori/SRR26896075_1.fastqfastq_ori/SRR26896075_2.fastq
F1043432.S27fastq_ori/SRR26896076_1.fastqfastq_ori/SRR26896076_2.fastq
F1043432.S28fastq_ori/SRR26896077_1.fastqfastq_ori/SRR26896077_2.fastq
F1043432.S29fastq_ori/SRR26896078_1.fastqfastq_ori/SRR26896078_2.fastq
F1043432.S30fastq_ori/SRR26896079_1.fastqfastq_ori/SRR26896079_2.fastq
F1043432.S31fastq_ori/SRR26896080_1.fastqfastq_ori/SRR26896080_2.fastq
F1043432.S32fastq_ori/SRR26896081_1.fastqfastq_ori/SRR26896081_2.fastq
F1043432.S33fastq_ori/SRR26896082_1.fastqfastq_ori/SRR26896082_2.fastq
F1043432.S34fastq_ori/SRR26896083_1.fastqfastq_ori/SRR26896083_2.fastq
F1043432.S35fastq_ori/SRR26896084_1.fastqfastq_ori/SRR26896084_2.fastq
F1043432.S36fastq_ori/SRR26896085_1.fastqfastq_ori/SRR26896085_2.fastq
F1043432.S37fastq_ori/SRR26896086_1.fastqfastq_ori/SRR26896086_2.fastq
F1043432.S38fastq_ori/SRR26896087_1.fastqfastq_ori/SRR26896087_2.fastq
F1043432.S39fastq_ori/SRR26896088_1.fastqfastq_ori/SRR26896088_2.fastq
F1043432.S40fastq_ori/SRR26896089_1.fastqfastq_ori/SRR26896089_2.fastq
F1043432.S41fastq_ori/SRR26896090_1.fastqfastq_ori/SRR26896090_2.fastq
F1043432.S42fastq_ori/SRR26896091_1.fastqfastq_ori/SRR26896091_2.fastq
F1043432.S43fastq_ori/SRR26896092_1.fastqfastq_ori/SRR26896092_2.fastq
F1043432.S44fastq_ori/SRR26896093_1.fastqfastq_ori/SRR26896093_2.fastq
F1043432.S45fastq_ori/SRR26896094_1.fastqfastq_ori/SRR26896094_2.fastq
F1043432.S46fastq_ori/SRR26896095_1.fastqfastq_ori/SRR26896095_2.fastq
F1043432.S47fastq_ori/SRR26896096_1.fastqfastq_ori/SRR26896096_2.fastq
F1043432.S48fastq_ori/SRR26896097_1.fastqfastq_ori/SRR26896097_2.fastq
F1043432.S49fastq_ori/SRR26896098_1.fastqfastq_ori/SRR26896098_2.fastq
F1043432.S50fastq_ori/SRR26896099_1.fastqfastq_ori/SRR26896099_2.fastq
F1043432.S51fastq_ori/SRR26896100_1.fastqfastq_ori/SRR26896100_2.fastq
F1043432.S52fastq_ori/SRR26896101_1.fastqfastq_ori/SRR26896101_2.fastq
F1043432.S53fastq_ori/SRR26896102_1.fastqfastq_ori/SRR26896102_2.fastq
F1043432.S54fastq_ori/SRR26896103_1.fastqfastq_ori/SRR26896103_2.fastq
F1043432.S55fastq_ori/SRR26896104_1.fastqfastq_ori/SRR26896104_2.fastq
F1043432.S56fastq_ori/SRR26896105_1.fastqfastq_ori/SRR26896105_2.fastq
F1043432.S57fastq_ori/SRR26896106_1.fastqfastq_ori/SRR26896106_2.fastq
F1043432.S58fastq_ori/SRR26896107_1.fastqfastq_ori/SRR26896107_2.fastq
F1043432.S59fastq_ori/SRR26896108_1.fastqfastq_ori/SRR26896108_2.fastq
F1049117.S01fastq_ori/SRR27100551_1.fastqfastq_ori/SRR27100551_2.fastq
F1049117.S02fastq_ori/SRR27100552_1.fastqfastq_ori/SRR27100552_2.fastq
F1049117.S03fastq_ori/SRR27100553_1.fastqfastq_ori/SRR27100553_2.fastq
F1049117.S04fastq_ori/SRR27100554_1.fastqfastq_ori/SRR27100554_2.fastq
F1049117.S05fastq_ori/SRR27100555_1.fastqfastq_ori/SRR27100555_2.fastq
F1049117.S06fastq_ori/SRR27100556_1.fastqfastq_ori/SRR27100556_2.fastq
F1049117.S07fastq_ori/SRR27100557_1.fastqfastq_ori/SRR27100557_2.fastq
F1049117.S08fastq_ori/SRR27100558_1.fastqfastq_ori/SRR27100558_2.fastq
F1049117.S09fastq_ori/SRR27100559_1.fastqfastq_ori/SRR27100559_2.fastq
F1049117.S10fastq_ori/SRR27100560_1.fastqfastq_ori/SRR27100560_2.fastq
F1049117.S11fastq_ori/SRR27100561_1.fastqfastq_ori/SRR27100561_2.fastq
F1049117.S12fastq_ori/SRR27100562_1.fastqfastq_ori/SRR27100562_2.fastq
F1049117.S13fastq_ori/SRR27100563_1.fastqfastq_ori/SRR27100563_2.fastq
F1049117.S14fastq_ori/SRR27100564_1.fastqfastq_ori/SRR27100564_2.fastq
F1049117.S15fastq_ori/SRR27100565_1.fastqfastq_ori/SRR27100565_2.fastq
F1049117.S16fastq_ori/SRR27100566_1.fastqfastq_ori/SRR27100566_2.fastq
F1049117.S17fastq_ori/SRR27100567_1.fastqfastq_ori/SRR27100567_2.fastq
F1049117.S18fastq_ori/SRR27100568_1.fastqfastq_ori/SRR27100568_2.fastq
F1049117.S19fastq_ori/SRR27100569_1.fastqfastq_ori/SRR27100569_2.fastq
F1049117.S20fastq_ori/SRR27100570_1.fastqfastq_ori/SRR27100570_2.fastq
F1049117.S21fastq_ori/SRR27100571_1.fastqfastq_ori/SRR27100571_2.fastq
F1049117.S22fastq_ori/SRR27100572_1.fastqfastq_ori/SRR27100572_2.fastq
F1049117.S23fastq_ori/SRR27100573_1.fastqfastq_ori/SRR27100573_2.fastq
F1049117.S24fastq_ori/SRR27100574_1.fastqfastq_ori/SRR27100574_2.fastq
F1049117.S25fastq_ori/SRR27100575_1.fastqfastq_ori/SRR27100575_2.fastq
F1049117.S26fastq_ori/SRR27100576_1.fastqfastq_ori/SRR27100576_2.fastq
F1049117.S27fastq_ori/SRR27100577_1.fastqfastq_ori/SRR27100577_2.fastq
F1049117.S28fastq_ori/SRR27100578_1.fastqfastq_ori/SRR27100578_2.fastq
F1049117.S29fastq_ori/SRR27100579_1.fastqfastq_ori/SRR27100579_2.fastq
F1049117.S30fastq_ori/SRR27100580_1.fastqfastq_ori/SRR27100580_2.fastq
F1049117.S31fastq_ori/SRR27100581_1.fastqfastq_ori/SRR27100581_2.fastq
F1049117.S32fastq_ori/SRR27100582_1.fastqfastq_ori/SRR27100582_2.fastq
F1049117.S33fastq_ori/SRR27100583_1.fastqfastq_ori/SRR27100583_2.fastq
F1049117.S34fastq_ori/SRR27100584_1.fastqfastq_ori/SRR27100584_2.fastq
F1049117.S35fastq_ori/SRR27100585_1.fastqfastq_ori/SRR27100585_2.fastq
F1049117.S36fastq_ori/SRR27100586_1.fastqfastq_ori/SRR27100586_2.fastq
F1049117.S37fastq_ori/SRR27100587_1.fastqfastq_ori/SRR27100587_2.fastq
F1049117.S38fastq_ori/SRR27100588_1.fastqfastq_ori/SRR27100588_2.fastq
F1049117.S39fastq_ori/SRR27100589_1.fastqfastq_ori/SRR27100589_2.fastq
F1049117.S40fastq_ori/SRR27100590_1.fastqfastq_ori/SRR27100590_2.fastq
F1049117.S41fastq_ori/SRR27100591_1.fastqfastq_ori/SRR27100591_2.fastq
F1049117.S42fastq_ori/SRR27100592_1.fastqfastq_ori/SRR27100592_2.fastq
F1049117.S43fastq_ori/SRR27100593_1.fastqfastq_ori/SRR27100593_2.fastq
F556311.S01fastq_ori/SRR9821833_1.fastqfastq_ori/SRR9821833_2.fastq
F556311.S02fastq_ori/SRR9821834_1.fastqfastq_ori/SRR9821834_2.fastq
F556311.S03fastq_ori/SRR9821835_1.fastqfastq_ori/SRR9821835_2.fastq
F556311.S04fastq_ori/SRR9821836_1.fastqfastq_ori/SRR9821836_2.fastq
F556311.S05fastq_ori/SRR9821837_1.fastqfastq_ori/SRR9821837_2.fastq
F556311.S06fastq_ori/SRR9821838_1.fastqfastq_ori/SRR9821838_2.fastq
F556311.S07fastq_ori/SRR9821839_1.fastqfastq_ori/SRR9821839_2.fastq
F556311.S08fastq_ori/SRR9821840_1.fastqfastq_ori/SRR9821840_2.fastq
F556311.S09fastq_ori/SRR9821841_1.fastqfastq_ori/SRR9821841_2.fastq
F556311.S10fastq_ori/SRR9821842_1.fastqfastq_ori/SRR9821842_2.fastq
F556311.S11fastq_ori/SRR9821843_1.fastqfastq_ori/SRR9821843_2.fastq
F556311.S12fastq_ori/SRR9821844_1.fastqfastq_ori/SRR9821844_2.fastq
F556311.S13fastq_ori/SRR9821845_1.fastqfastq_ori/SRR9821845_2.fastq
F556311.S14fastq_ori/SRR9821846_1.fastqfastq_ori/SRR9821846_2.fastq
F556311.S15fastq_ori/SRR9821847_1.fastqfastq_ori/SRR9821847_2.fastq
F556311.S16fastq_ori/SRR9821848_1.fastqfastq_ori/SRR9821848_2.fastq
F556311.S17fastq_ori/SRR9821849_1.fastqfastq_ori/SRR9821849_2.fastq
F556311.S18fastq_ori/SRR9821850_1.fastqfastq_ori/SRR9821850_2.fastq
F556311.S19fastq_ori/SRR9821851_1.fastqfastq_ori/SRR9821851_2.fastq
F556311.S20fastq_ori/SRR9821852_1.fastqfastq_ori/SRR9821852_2.fastq
F556311.S21fastq_ori/SRR9821853_1.fastqfastq_ori/SRR9821853_2.fastq
F556311.S22fastq_ori/SRR9821854_1.fastqfastq_ori/SRR9821854_2.fastq
F556311.S23fastq_ori/SRR9821855_1.fastqfastq_ori/SRR9821855_2.fastq
F556311.S24fastq_ori/SRR9821856_1.fastqfastq_ori/SRR9821856_2.fastq
F556311.S25fastq_ori/SRR9821857_1.fastqfastq_ori/SRR9821857_2.fastq
F556311.S26fastq_ori/SRR9821858_1.fastqfastq_ori/SRR9821858_2.fastq
F556311.S27fastq_ori/SRR9821859_1.fastqfastq_ori/SRR9821859_2.fastq
F556311.S28fastq_ori/SRR9821860_1.fastqfastq_ori/SRR9821860_2.fastq
F556311.S29fastq_ori/SRR9821861_1.fastqfastq_ori/SRR9821861_2.fastq
F556311.S30fastq_ori/SRR9821862_1.fastqfastq_ori/SRR9821862_2.fastq
F556311.S31fastq_ori/SRR9821863_1.fastqfastq_ori/SRR9821863_2.fastq
F556311.S32fastq_ori/SRR9821864_1.fastqfastq_ori/SRR9821864_2.fastq
F556311.S33fastq_ori/SRR9821865_1.fastqfastq_ori/SRR9821865_2.fastq
F556311.S34fastq_ori/SRR9821866_1.fastqfastq_ori/SRR9821866_2.fastq
F556311.S35fastq_ori/SRR9821867_1.fastqfastq_ori/SRR9821867_2.fastq
F556311.S36fastq_ori/SRR9821868_1.fastqfastq_ori/SRR9821868_2.fastq
F556311.S37fastq_ori/SRR9821869_1.fastqfastq_ori/SRR9821869_2.fastq
F556311.S38fastq_ori/SRR9821870_1.fastqfastq_ori/SRR9821870_2.fastq
F556311.S39fastq_ori/SRR9821871_1.fastqfastq_ori/SRR9821871_2.fastq
F556311.S40fastq_ori/SRR9821872_1.fastqfastq_ori/SRR9821872_2.fastq
F556311.S41fastq_ori/SRR9821873_1.fastqfastq_ori/SRR9821873_2.fastq
F556311.S42fastq_ori/SRR9821874_1.fastqfastq_ori/SRR9821874_2.fastq
F556311.S43fastq_ori/SRR9821875_1.fastqfastq_ori/SRR9821875_2.fastq
F556311.S44fastq_ori/SRR9821876_1.fastqfastq_ori/SRR9821876_2.fastq
F556311.S45fastq_ori/SRR9821877_1.fastqfastq_ori/SRR9821877_2.fastq
F556311.S46fastq_ori/SRR9821878_1.fastqfastq_ori/SRR9821878_2.fastq
F556311.S47fastq_ori/SRR9821879_1.fastqfastq_ori/SRR9821879_2.fastq
F556311.S48fastq_ori/SRR9821880_1.fastqfastq_ori/SRR9821880_2.fastq
F556311.S49fastq_ori/SRR9821881_1.fastqfastq_ori/SRR9821881_2.fastq
F556311.S50fastq_ori/SRR9821882_1.fastqfastq_ori/SRR9821882_2.fastq
F556311.S51fastq_ori/SRR9821883_1.fastqfastq_ori/SRR9821883_2.fastq
F556311.S52fastq_ori/SRR9821884_1.fastqfastq_ori/SRR9821884_2.fastq
F556311.S53fastq_ori/SRR9821885_1.fastqfastq_ori/SRR9821885_2.fastq
F556311.S54fastq_ori/SRR9821886_1.fastqfastq_ori/SRR9821886_2.fastq
F556311.S55fastq_ori/SRR9821887_1.fastqfastq_ori/SRR9821887_2.fastq
F556311.S56fastq_ori/SRR9821888_1.fastqfastq_ori/SRR9821888_2.fastq
F556311.S57fastq_ori/SRR9821889_1.fastqfastq_ori/SRR9821889_2.fastq
F556311.S58fastq_ori/SRR9821890_1.fastqfastq_ori/SRR9821890_2.fastq
F556311.S59fastq_ori/SRR9821891_1.fastqfastq_ori/SRR9821891_2.fastq
F556311.S60fastq_ori/SRR9821892_1.fastqfastq_ori/SRR9821892_2.fastq
F598825.S01fastq_ori/SRR10849321_1.fastqfastq_ori/SRR10849321_2.fastq
F598825.S02fastq_ori/SRR10849322_1.fastqfastq_ori/SRR10849322_2.fastq
F598825.S03fastq_ori/SRR10849323_1.fastqfastq_ori/SRR10849323_2.fastq
F598825.S04fastq_ori/SRR10849324_1.fastqfastq_ori/SRR10849324_2.fastq
F598825.S05fastq_ori/SRR10849325_1.fastqfastq_ori/SRR10849325_2.fastq
F598825.S06fastq_ori/SRR10849326_1.fastqfastq_ori/SRR10849326_2.fastq
F598825.S07fastq_ori/SRR10849327_1.fastqfastq_ori/SRR10849327_2.fastq
F598825.S08fastq_ori/SRR10849328_1.fastqfastq_ori/SRR10849328_2.fastq
F598825.S09fastq_ori/SRR10849329_1.fastqfastq_ori/SRR10849329_2.fastq
F598825.S10fastq_ori/SRR10849330_1.fastqfastq_ori/SRR10849330_2.fastq
F598825.S11fastq_ori/SRR10849331_1.fastqfastq_ori/SRR10849331_2.fastq
F598825.S12fastq_ori/SRR10849332_1.fastqfastq_ori/SRR10849332_2.fastq
F598825.S13fastq_ori/SRR10849333_1.fastqfastq_ori/SRR10849333_2.fastq
F598825.S14fastq_ori/SRR10849334_1.fastqfastq_ori/SRR10849334_2.fastq
F598825.S15fastq_ori/SRR10849335_1.fastqfastq_ori/SRR10849335_2.fastq
F598825.S16fastq_ori/SRR10849336_1.fastqfastq_ori/SRR10849336_2.fastq
F598825.S17fastq_ori/SRR10849337_1.fastqfastq_ori/SRR10849337_2.fastq
F598825.S18fastq_ori/SRR10849338_1.fastqfastq_ori/SRR10849338_2.fastq
F598825.S19fastq_ori/SRR10849339_1.fastqfastq_ori/SRR10849339_2.fastq
F598825.S20fastq_ori/SRR10849340_1.fastqfastq_ori/SRR10849340_2.fastq
F598825.S21fastq_ori/SRR10849341_1.fastqfastq_ori/SRR10849341_2.fastq
F598825.S22fastq_ori/SRR10849342_1.fastqfastq_ori/SRR10849342_2.fastq
F598825.S23fastq_ori/SRR10849343_1.fastqfastq_ori/SRR10849343_2.fastq
F598825.S24fastq_ori/SRR10849344_1.fastqfastq_ori/SRR10849344_2.fastq
F598825.S25fastq_ori/SRR10849345_1.fastqfastq_ori/SRR10849345_2.fastq
F598825.S26fastq_ori/SRR10849346_1.fastqfastq_ori/SRR10849346_2.fastq
F598825.S27fastq_ori/SRR10849347_1.fastqfastq_ori/SRR10849347_2.fastq
F598825.S28fastq_ori/SRR10849348_1.fastqfastq_ori/SRR10849348_2.fastq
F598825.S29fastq_ori/SRR10849349_1.fastqfastq_ori/SRR10849349_2.fastq
F598825.S30fastq_ori/SRR10849350_1.fastqfastq_ori/SRR10849350_2.fastq
F756771.S01fastq_ori/SRR15560286_1.fastqfastq_ori/SRR15560286_2.fastq
F756771.S02fastq_ori/SRR15560287_1.fastqfastq_ori/SRR15560287_2.fastq
F756771.S03fastq_ori/SRR15560288_1.fastqfastq_ori/SRR15560288_2.fastq
F756771.S04fastq_ori/SRR15560289_1.fastqfastq_ori/SRR15560289_2.fastq
F756771.S05fastq_ori/SRR15560290_1.fastqfastq_ori/SRR15560290_2.fastq
F756771.S06fastq_ori/SRR15560291_1.fastqfastq_ori/SRR15560291_2.fastq
F756771.S07fastq_ori/SRR15560292_1.fastqfastq_ori/SRR15560292_2.fastq
F756771.S08fastq_ori/SRR15560293_1.fastqfastq_ori/SRR15560293_2.fastq
F756771.S09fastq_ori/SRR15560294_1.fastqfastq_ori/SRR15560294_2.fastq
F756771.S10fastq_ori/SRR15560295_1.fastqfastq_ori/SRR15560295_2.fastq
F756771.S11fastq_ori/SRR15560296_1.fastqfastq_ori/SRR15560296_2.fastq
F756771.S12fastq_ori/SRR15560297_1.fastqfastq_ori/SRR15560297_2.fastq
F756771.S13fastq_ori/SRR15560298_1.fastqfastq_ori/SRR15560298_2.fastq
F756771.S14fastq_ori/SRR15560299_1.fastqfastq_ori/SRR15560299_2.fastq
F756771.S15fastq_ori/SRR15560300_1.fastqfastq_ori/SRR15560300_2.fastq
F756771.S16fastq_ori/SRR15560301_1.fastqfastq_ori/SRR15560301_2.fastq
F756771.S17fastq_ori/SRR15560302_1.fastqfastq_ori/SRR15560302_2.fastq
F756771.S18fastq_ori/SRR15560303_1.fastqfastq_ori/SRR15560303_2.fastq
F756771.S19fastq_ori/SRR15560304_1.fastqfastq_ori/SRR15560304_2.fastq
F756771.S20fastq_ori/SRR15560305_1.fastqfastq_ori/SRR15560305_2.fastq
F756771.S21fastq_ori/SRR15560306_1.fastqfastq_ori/SRR15560306_2.fastq
F756771.S22fastq_ori/SRR15560307_1.fastqfastq_ori/SRR15560307_2.fastq
F756771.S23fastq_ori/SRR15560308_1.fastqfastq_ori/SRR15560308_2.fastq
F756771.S24fastq_ori/SRR15560309_1.fastqfastq_ori/SRR15560309_2.fastq
F756771.S25fastq_ori/SRR15560310_1.fastqfastq_ori/SRR15560310_2.fastq
F756771.S26fastq_ori/SRR15560311_1.fastqfastq_ori/SRR15560311_2.fastq
F756771.S27fastq_ori/SRR15560312_1.fastqfastq_ori/SRR15560312_2.fastq
F756771.S28fastq_ori/SRR15560313_1.fastqfastq_ori/SRR15560313_2.fastq
F756771.S29fastq_ori/SRR15560314_1.fastqfastq_ori/SRR15560314_2.fastq
F756771.S30fastq_ori/SRR15560315_1.fastqfastq_ori/SRR15560315_2.fastq
F756771.S31fastq_ori/SRR15560316_1.fastqfastq_ori/SRR15560316_2.fastq
F756771.S32fastq_ori/SRR15560317_1.fastqfastq_ori/SRR15560317_2.fastq
F756771.S33fastq_ori/SRR15560318_1.fastqfastq_ori/SRR15560318_2.fastq
F266382.S01fastq_ori/SRR2064219.fastq
F266382.S02fastq_ori/SRR2064220.fastq
F266382.S03fastq_ori/SRR2064221.fastq
F266382.S04fastq_ori/SRR2064222.fastq
F266382.S05fastq_ori/SRR2064223.fastq
F266382.S06fastq_ori/SRR2064224.fastq
F266382.S07fastq_ori/SRR2064225.fastq
F266382.S08fastq_ori/SRR2064226.fastq
F266382.S09fastq_ori/SRR2064227.fastq
F266382.S10fastq_ori/SRR2064228.fastq
F266382.S11fastq_ori/SRR2064229.fastq
F266382.S12fastq_ori/SRR2064230.fastq
F266382.S13fastq_ori/SRR2064231.fastq
F266382.S14fastq_ori/SRR2064232.fastq
F266382.S15fastq_ori/SRR2064233.fastq
F266382.S16fastq_ori/SRR2064234.fastq
F266382.S17fastq_ori/SRR2064235.fastq
F266382.S18fastq_ori/SRR2064236.fastq
F266382.S19fastq_ori/SRR2064237.fastq
F266382.S20fastq_ori/SRR2064238.fastq
F266382.S21fastq_ori/SRR2064239.fastq
F266382.S22fastq_ori/SRR2064240.fastq
F266382.S23fastq_ori/SRR2064241.fastq
F266382.S24fastq_ori/SRR2064242.fastq
F266382.S25fastq_ori/SRR2064243.fastq
F266382.S26fastq_ori/SRR2064244.fastq
F266382.S27fastq_ori/SRR2064245.fastq
F266382.S28fastq_ori/SRR2064246.fastq
F266382.S29fastq_ori/SRR2064247.fastq
F266382.S30fastq_ori/SRR2064248.fastq
F266382.S31fastq_ori/SRR2064249.fastq
F266382.S32fastq_ori/SRR2064250.fastq
F266382.S33fastq_ori/SRR2064251.fastq
F266382.S34fastq_ori/SRR2064252.fastq
F266382.S35fastq_ori/SRR2064253.fastq
F266382.S36fastq_ori/SRR2064254.fastq
F266382.S37fastq_ori/SRR2064255.fastq
F266382.S38fastq_ori/SRR2064256.fastq
F266382.S39fastq_ori/SRR2064257.fastq
F266382.S40fastq_ori/SRR2064258.fastq
F266382.S41fastq_ori/SRR2064259.fastq
F266382.S42fastq_ori/SRR2064260.fastq
F266382.S43fastq_ori/SRR2064261.fastq
F266382.S44fastq_ori/SRR2064262.fastq
F266382.S45fastq_ori/SRR2064263.fastq
F266382.S46fastq_ori/SRR2064264.fastq
F266382.S47fastq_ori/SRR2064265.fastq
F266382.S48fastq_ori/SRR2064266.fastq
F266382.S49fastq_ori/SRR2064267.fastq
F266382.S50fastq_ori/SRR2064268.fastq
F266382.S51fastq_ori/SRR2064269.fastq
F266382.S52fastq_ori/SRR2064270.fastq
F266382.S53fastq_ori/SRR2064271.fastq
F266382.S54fastq_ori/SRR2064272.fastq
F266382.S55fastq_ori/SRR2064273.fastq
F266382.S56fastq_ori/SRR2064274.fastq
F266382.S57fastq_ori/SRR2064275.fastq
F266382.S58fastq_ori/SRR2064276.fastq
F266382.S59fastq_ori/SRR2064277.fastq
F266382.S60fastq_ori/SRR2064278.fastq
F295501.S01fastq_ori/SRR2914373.fastq
F295501.S02fastq_ori/SRR2914374.fastq
F295501.S03fastq_ori/SRR2914375.fastq
F295501.S04fastq_ori/SRR2914376.fastq
F295501.S05fastq_ori/SRR2914377.fastq
F295501.S06fastq_ori/SRR2914378.fastq
F295501.S07fastq_ori/SRR2914379.fastq
F295501.S08fastq_ori/SRR2914380.fastq
F295501.S09fastq_ori/SRR2914381.fastq
F295501.S10fastq_ori/SRR2914382.fastq
F295501.S11fastq_ori/SRR2914383.fastq
F295501.S12fastq_ori/SRR2914384.fastq
F295501.S13fastq_ori/SRR2914385.fastq
F295501.S14fastq_ori/SRR2989657.fastq

Please download and save the file to your computer storage device. The download link will expire after 60 days upon your receiving of this report.

Raw sequence data download link:

 

VI. Analysis - DADA2 Read Processing

What is DADA2?

DADA2 is a software package that models and corrects Illumina-sequenced amplicon errors [1]. DADA2 infers sample sequences exactly, without coarse-graining into OTUs, and resolves differences of as little as one nucleotide. DADA2 identified more real variants and output fewer spurious sequences than other methods.

DADA2’s advantage is that it uses more of the data. The DADA2 error model incorporates quality information, which is ignored by all other methods after filtering. The DADA2 error model incorporates quantitative abundances, whereas most other methods use abundance ranks if they use abundance at all. The DADA2 error model identifies the differences between sequences, eg. A->C, whereas other methods merely count the mismatches. DADA2 can parameterize its error model from the data itself, rather than relying on previous datasets that may or may not reflect the PCR and sequencing protocols used in your study.

DADA2 Software Package is available as an R package at : https://benjjneb.github.io/dada2/index.html

References

  1. Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJ, Holmes SP. DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods. 2016 Jul;13(7):581-3. doi: 10.1038/nmeth.3869. Epub 2016 May 23. PMID: 27214047; PMCID: PMC4927377.

Analysis Procedures:

DADA2 pipeline includes several tools for read quality control, including quality filtering, trimming, denoising, pair merging and chimera filtering. Below are the major processing steps of DADA2:

Step 1. Read trimming based on sequence quality The quality of NGS Illumina sequences often decreases toward the end of the reads. DADA2 allows to trim off the poor quality read ends in order to improve the error model building and pair mergicing performance.

Step 2. Learn the Error Rates The DADA2 algorithm makes use of a parametric error model (err) and every amplicon dataset has a different set of error rates. The learnErrors method learns this error model from the data, by alternating estimation of the error rates and inference of sample composition until they converge on a jointly consistent solution. As in many machine-learning problems, the algorithm must begin with an initial guess, for which the maximum possible error rates in this data are used (the error rates if only the most abundant sequence is correct and all the rest are errors).

Step 3. Infer amplicon sequence variants (ASVs) based on the error model built in previous step. This step is also called sequence "denoising". The outcome of this step is a list of ASVs that are the equivalent of oligonucleotides.

Step 4. Merge paired reads. If the sequencing products are read pairs, DADA2 will merge the R1 and R2 ASVs into single sequences. Merging is performed by aligning the denoised forward reads with the reverse-complement of the corresponding denoised reverse reads, and then constructing the merged “contig” sequences. By default, merged sequences are only output if the forward and reverse reads overlap by at least 12 bases, and are identical to each other in the overlap region (but these conditions can be changed via function arguments).

Step 5. Remove chimera. The core dada method corrects substitution and indel errors, but chimeras remain. Fortunately, the accuracy of sequence variants after denoising makes identifying chimeric ASVs simpler than when dealing with fuzzy OTUs. Chimeric sequences are identified if they can be exactly reconstructed by combining a left-segment and a right-segment from two more abundant “parent” sequences. The frequency of chimeric sequences varies substantially from dataset to dataset, and depends on on factors including experimental procedures and sample complexity.

Results

1. Read Quality Plots NGS sequence analaysis starts with visualizing the quality of the sequencing. Below are the quality plots of the first sample for the R1 and R2 reads separately. In gray-scale is a heat map of the frequency of each quality score at each base position. The mean quality score at each position is shown by the green line, and the quartiles of the quality score distribution by the orange lines. The forward reads are usually of better quality. It is a common practice to trim the last few nucleotides to avoid less well-controlled errors that can arise there. The trimming affects the downstream steps including error model building, merging and chimera calling. FOMC uses an empirical approach to test many combinations of different trim length in order to achieve best final amplicon sequence variants (ASVs), see the next section “Optimal trim length for ASVs”.

Quality plots for all samples:

2. Optimal trim length for ASVs The final number of merged and chimera-filtered ASVs depends on the quality filtering (hence trimming) in the very beginning of the DADA2 pipeline. In order to achieve highest number of ASVs, an empirical approach was used -

  1. Create a random subset of each sample consisting of 5,000 R1 and 5,000 R2 (to reduce computation time)
  2. Trim 10 bases at a time from the ends of both R1 and R2 up to 50 bases
  3. For each combination of trimmed length (e.g., 300x300, 300x290, 290x290 etc), the trimmed reads are subject to the entire DADA2 pipeline for chimera-filtered merged ASVs
  4. The combination with highest percentage of the input reads becoming final ASVs is selected for the complete set of data

Below is the result of such operation, showing ASV percentages of total reads for all trimming combinations (1st Column = R1 lengths in bases; 1st Row = R2 lengths in bases):

R1/R2251241231221211201
25173.88%74.07%74.42%74.60%74.86%75.16%
24174.21%74.38%74.81%74.98%75.18%75.44%
23174.73%74.88%75.36%75.45%75.58%75.87%
22175.10%75.27%75.75%75.91%76.02%76.34%
21175.41%75.58%76.12%76.39%76.56%76.77%
20175.74%75.94%76.40%77.01%77.21%77.43%

Based on the above result, the trim length combination of R1 = 201 bases and R2 = 201 bases (highlighted red above), was chosen for generating final ASVs for all sequences. This combination generated highest number of merged non-chimeric ASVs and was used for downstream analyses, if requested.

3. Error plots from learning the error rates After DADA2 building the error model for the set of data, it is always worthwhile, as a sanity check if nothing else, to visualize the estimated error rates. The error rates for each possible transition (A→C, A→G, …) are shown below. Points are the observed error rates for each consensus quality score. The black line shows the estimated error rates after convergence of the machine-learning algorithm. The red line shows the error rates expected under the nominal definition of the Q-score. The ideal result would be the estimated error rates (black line) are a good fit to the observed rates (points), and the error rates drop with increased quality as expected.

Forward Read R1 Error Plot


Reverse Read R2 Error Plot

The PDF version of these plots are available here:

 

4. DADA2 Result Summary The table below shows the summary of the DADA2 analysis, tracking paired read counts of each samples for all the steps during DADA2 denoising process - including end-trimming (filtered), denoising (denoisedF, denoisedF), pair merging (merged) and chimera removal (nonchim).

Sample IDF73312.S01F73312.S02F73312.S03F73312.S04F73312.S05F73312.S06F73312.S07F73312.S08F73312.S09F73312.S10F73312.S11F73312.S12F73312.S13F73312.S14F73312.S15F73312.S16F73312.S17F73312.S18F73312.S19F73312.S20F73312.S21F73312.S22F73312.S23F73312.S24F73312.S25F73312.S26F73312.S27F73312.S28F73312.S29F73312.S30F73312.S31F73312.S32F73312.S33F73312.S34F73312.S35F73312.S36F73312.S37F73312.S38F73312.S39F73312.S40F73312.S41F73312.S42F73312.S43F73312.S44F73312.S45F73312.S46F73312.S47F73312.S48F73312.S49F73312.S50F73312.S51F73312.S52F73312.S53F73312.S54F73312.S55F73312.S56F73312.S57F73312.S58F73312.S59F73312.S60F73312.S61F73312.S62F73312.S63F73312.S64F73312.S65F73312.S66F73312.S67F73312.S68F73312.S69F73312.S70F73312.S71F73312.S72F73312.S73F73312.S74F73312.S75F73312.S76F73312.S77F73312.S78F73312.S79F73312.S80F73312.S81F73312.S82F73312.S83F73312.S84F73312.S85F73312.S86F73312.S87Row SumPercentage
input95,800100,468136,548313,320369,714169,33383,81933,82995,79586,433225,056184,00655,775128,465162,618278,58497,103163,072189,048137,40278,11266,811100,22990,460207,555122,25245,37296,13280,547147,204141,03540,854168,464126,01795,876170,977148,890139,29744,165128,65472,563131,39162,772171,469165,234155,64022,714162,45865,419112,75299,049144,183134,470124,73642,842135,10495,271122,45278,891141,660134,833131,95846,88684,924249,816193,197347,518311,635332,38960,935349,962216,52870,84367,635117,80898,560104,45029,02496,21058,900111,373155,357138,234157,712138,621163,568124,77311,679,810100.00%
filtered95,800100,463136,546313,316369,709169,33183,81833,82795,79386,431225,051184,00155,774128,462162,615278,58397,101163,065189,045137,39878,10966,811100,22990,458207,550122,25145,37296,13280,544147,203141,03140,851168,461126,01695,874170,973148,888139,29644,165128,65272,562131,38762,771171,468165,227155,63822,714162,45665,418112,75299,046144,181134,470124,73542,842135,09895,270122,44878,890141,657134,830131,95746,88584,923249,813193,193347,506311,632332,38160,934349,951216,52770,83967,633117,80598,559104,45029,02296,20758,900111,370155,356138,232157,711138,619163,567124,77311,679,600100.00%
denoisedF91,98698,597133,801305,182359,141165,52781,30432,20492,90683,054216,493175,75951,100122,218155,074269,89491,092156,868181,261131,12375,50964,06297,85987,605199,607115,63743,73993,51978,164144,208137,49938,626164,868123,06492,684167,621146,111136,31741,210125,31369,981127,90760,258168,230161,648151,70920,590158,88462,880110,05296,365141,341131,832122,68341,040132,36692,845119,68076,059138,696132,474129,30844,28082,709241,821184,210337,387303,633322,86454,740340,156208,19468,86365,149115,28896,550102,06127,14893,80156,968108,579152,041135,336153,226135,388160,261121,19311,326,48096.97%
denoisedR93,72698,572133,529304,935359,480165,69881,42032,68293,23283,694217,320176,47553,215124,217157,154270,57893,018157,191183,571132,99975,59565,06297,85987,484200,546117,99443,68893,59378,353144,192137,28939,633164,645122,94893,833166,867145,957135,85542,601125,65070,752128,03761,166167,755161,882151,52220,578158,82363,850109,93796,904140,604131,552122,16141,563132,33093,321119,58477,012138,565132,129128,71845,59283,085242,613188,270338,171303,793322,90958,760340,649211,21768,86865,489115,08596,453101,94328,04493,81757,411108,415151,772135,062153,999135,652160,226122,08011,370,47097.35%
merged85,70592,831125,418284,823333,660154,93474,53028,62685,09675,510197,844157,60143,650112,168140,804248,64180,053143,460167,111119,17069,22858,58691,05580,312183,155104,96439,42785,69671,815134,616126,41034,622154,530114,17786,520157,072136,604128,15435,120117,64164,416119,92154,292158,500152,184140,90317,122148,85958,940102,70390,726131,909124,260116,03037,434125,07286,503111,08570,927129,151124,325121,65339,82277,082224,025168,840315,324283,329298,60646,943315,860194,04163,60459,103106,69490,88194,75524,52487,22252,413100,588143,320125,989141,284127,447150,106113,13110,493,18789.84%
nonchim68,77574,817105,760219,069268,019127,95763,46526,36566,94866,994168,492135,45340,446101,356122,150210,04573,426123,384143,743105,40660,76850,66478,50668,361153,48394,19634,72373,44961,581109,218102,80230,763119,63494,91569,936120,564111,179106,16332,69389,63454,33199,03247,029126,939122,931119,96616,497117,52549,17682,15574,661106,013105,53889,75833,30398,96473,06895,69460,502107,456101,49095,00336,06861,487187,200139,185256,273238,415229,83341,469250,257154,07252,73053,06487,94069,62377,71422,39072,09142,91679,366113,585105,197111,81599,963123,76894,0378,652,79174.08%

This table can be downloaded as an Excel table below:

 

5. DADA2 Amplicon Sequence Variants (ASVs). A total of 8296 unique merged and chimera-free ASV sequences were identified, and their corresponding read counts for each sample are available in the "ASV Read Count Table" with rows for the ASV sequences and columns for sample. This read count table can be used for microbial profile comparison among different samples and the sequences provided in the table can be used to taxonomy assignment.

 

The table can be downloaded from this link:

 
 

Sample Meta Information

Download Sample Meta Information
#SampleIDSRR_IDBioProjectCountrySubjectStatusTypeMergedGroup
F73312.S01ERR12711800PRJEB73312South KoreaHTY_01ControlSalivaControl_SalivaControl_Saliva
F73312.S02ERR12711803PRJEB73312South KoreaHTY_05ControlSalivaControl_SalivaControl_Saliva
F73312.S03ERR12711807PRJEB73312South KoreaHTY_07ControlSalivaControl_SalivaControl_Saliva
F73312.S04ERR12711813PRJEB73312South KoreaHTY_12ControlSalivaControl_SalivaControl_Saliva
F73312.S05ERR12711900PRJEB73312South KoreaHTY_13ControlSalivaControl_SalivaControl_Saliva
F73312.S06ERR12711905PRJEB73312South KoreaHTY_19ControlSalivaControl_SalivaControl_Saliva
F73312.S07ERR12712136PRJEB73312South KoreaHYC_04ControlSalivaControl_SalivaControl_Saliva
F73312.S08ERR12712138PRJEB73312South KoreaHYC_05ControlSalivaControl_SalivaControl_Saliva
F73312.S09ERR12712141PRJEB73312South KoreaHYC_08ControlSalivaControl_SalivaControl_Saliva
F73312.S10ERR12712145PRJEB73312South KoreaHYC_10ControlSalivaControl_SalivaControl_Saliva
F73312.S11ERR12712151PRJEB73312South KoreaHYC_16ControlSalivaControl_SalivaControl_Saliva
F73312.S12ERR12712157PRJEB73312South KoreaHYC_18ControlSalivaControl_SalivaControl_Saliva
F73312.S13ERR12712160PRJEB73312South KoreaHYC_19ControlSalivaControl_SalivaControl_Saliva
F73312.S14ERR12712164PRJEB73312South KoreaHYC_21ControlSalivaControl_SalivaControl_Saliva
F73312.S15ERR12712167PRJEB73312South KoreaHYC_23ControlSalivaControl_SalivaControl_Saliva
F73312.S16ERR12712183PRJEB73312South KoreaHYC_25ControlSalivaControl_SalivaControl_Saliva
F73312.S17ERR12712184PRJEB73312South KoreaHYC_27ControlSalivaControl_SalivaControl_Saliva
F73312.S18ERR12712190PRJEB73312South KoreaHYC_30ControlSalivaControl_SalivaControl_Saliva
F73312.S19ERR12712191PRJEB73312South KoreaHYC_31ControlSalivaControl_SalivaControl_Saliva
F73312.S20ERR12712192PRJEB73312South KoreaHYC_37ControlSalivaControl_SalivaControl_Saliva
F73312.S21ERR12712193PRJEB73312South KoreaHYC_38ControlSalivaControl_SalivaControl_Saliva
F73312.S22ERR12712194PRJEB73312South KoreaHYC_39ControlSalivaControl_SalivaControl_Saliva
F73312.S23ERR12712195PRJEB73312South KoreaHYC_41ControlSalivaControl_SalivaControl_Saliva
F73312.S24ERR12712196PRJEB73312South KoreaHYC_42ControlSalivaControl_SalivaControl_Saliva
F73312.S25ERR12712197PRJEB73312South KoreaHYC_48ControlSalivaControl_SalivaControl_Saliva
F73312.S26ERR12712198PRJEB73312South KoreaHYC_53ControlSalivaControl_SalivaControl_Saliva
F73312.S27ERR12712199PRJEB73312South KoreaHYC_54ControlSalivaControl_SalivaControl_Saliva
F73312.S28ERR12712200PRJEB73312South KoreaHYC_56ControlSalivaControl_SalivaControl_Saliva
F73312.S29ERR12712201PRJEB73312South KoreaHYC_60ControlSalivaControl_SalivaControl_Saliva
F73312.S30ERR12712202PRJEB73312South KoreaOLP_01OLPSalivaOLP_SalivaOLP_Saliva
F73312.S31ERR12712203PRJEB73312South KoreaOLP_02OLPSalivaOLP_SalivaOLP_Saliva
F73312.S32ERR12712204PRJEB73312South KoreaOLP_03OLPSalivaOLP_SalivaOLP_Saliva
F73312.S33ERR12712205PRJEB73312South KoreaOLP_04OLPSalivaOLP_SalivaOLP_Saliva
F73312.S34ERR12712206PRJEB73312South KoreaOLP_06OLPSalivaOLP_SalivaOLP_Saliva
F73312.S35ERR12712207PRJEB73312South KoreaOLP_07OLPSalivaOLP_SalivaOLP_Saliva
F73312.S36ERR12712208PRJEB73312South KoreaOLP_08OLPSalivaOLP_SalivaOLP_Saliva
F73312.S37ERR12712209PRJEB73312South KoreaOLP_09OLPSalivaOLP_SalivaOLP_Saliva
F73312.S38ERR12712210PRJEB73312South KoreaOLP_10OLPSalivaOLP_SalivaOLP_Saliva
F73312.S39ERR12712211PRJEB73312South KoreaOLP_11OLPSalivaOLP_SalivaOLP_Saliva
F73312.S40ERR12712212PRJEB73312South KoreaOLP_12OLPSalivaOLP_SalivaOLP_Saliva
F73312.S41ERR12712213PRJEB73312South KoreaOLP_13OLPSalivaOLP_SalivaOLP_Saliva
F73312.S42ERR12712214PRJEB73312South KoreaOLP_14OLPSalivaOLP_SalivaOLP_Saliva
F73312.S43ERR12712215PRJEB73312South KoreaOLP_15OLPSalivaOLP_SalivaOLP_Saliva
F73312.S44ERR12712216PRJEB73312South KoreaOLP_16OLPSalivaOLP_SalivaOLP_Saliva
F73312.S45ERR12712217PRJEB73312South KoreaOLP_17OLPSalivaOLP_SalivaOLP_Saliva
F73312.S46ERR12712218PRJEB73312South KoreaOLP_18OLPSalivaOLP_SalivaOLP_Saliva
F73312.S47ERR12712219PRJEB73312South KoreaOLP_19OLPSalivaOLP_SalivaOLP_Saliva
F73312.S48ERR12712220PRJEB73312South KoreaOLP_20OLPSalivaOLP_SalivaOLP_Saliva
F73312.S49ERR12712221PRJEB73312South KoreaOLP_21OLPSalivaOLP_SalivaOLP_Saliva
F73312.S50ERR12712222PRJEB73312South KoreaOLP_22OLPSalivaOLP_SalivaOLP_Saliva
F73312.S51ERR12712223PRJEB73312South KoreaOLP_23OLPSalivaOLP_SalivaOLP_Saliva
F73312.S52ERR12712224PRJEB73312South KoreaOLP_24OLPSalivaOLP_SalivaOLP_Saliva
F73312.S53ERR12712225PRJEB73312South KoreaOLP_25OLPSalivaOLP_SalivaOLP_Saliva
F73312.S54ERR12712226PRJEB73312South KoreaOLP_26OLPSalivaOLP_SalivaOLP_Saliva
F73312.S55ERR12712227PRJEB73312South KoreaOLP_27OLPSalivaOLP_SalivaOLP_Saliva
F73312.S56ERR12712228PRJEB73312South KoreaOLP_28OLPSalivaOLP_SalivaOLP_Saliva
F73312.S57ERR12712229PRJEB73312South KoreaOLP_29OLPSalivaOLP_SalivaOLP_Saliva
F73312.S58ERR12712230PRJEB73312South KoreaOLP_30OLPSalivaOLP_SalivaOLP_Saliva
F73312.S59ERR12712231PRJEB73312South KoreaOLP_31OLPSalivaOLP_SalivaOLP_Saliva
F73312.S60ERR12712232PRJEB73312South KoreaOLP_32OLPSalivaOLP_SalivaOLP_Saliva
F73312.S61ERR12712233PRJEB73312South KoreaOLP_33OLPSalivaOLP_SalivaOLP_Saliva
F73312.S62ERR12712234PRJEB73312South KoreaOLP_34OLPSalivaOLP_SalivaOLP_Saliva
F73312.S63ERR12712235PRJEB73312South KoreaOLP_35OLPSalivaOLP_SalivaOLP_Saliva
F73312.S64ERR12712236PRJEB73312South KoreaOLP_37OLPSalivaOLP_SalivaOLP_Saliva
F73312.S65ERR12712237PRJEB73312South KoreaOLP_38OLPSalivaOLP_SalivaOLP_Saliva
F73312.S66ERR12712238PRJEB73312South KoreaOLP_39OLPSalivaOLP_SalivaOLP_Saliva
F73312.S67ERR12712239PRJEB73312South KoreaOLP_40OLPSalivaOLP_SalivaOLP_Saliva
F73312.S68ERR12712240PRJEB73312South KoreaOLP_41OLPSalivaOLP_SalivaOLP_Saliva
F73312.S69ERR12712241PRJEB73312South KoreaOLP_42OLPSalivaOLP_SalivaOLP_Saliva
F73312.S70ERR12712242PRJEB73312South KoreaOLP_43OLPSalivaOLP_SalivaOLP_Saliva
F73312.S71ERR12712243PRJEB73312South KoreaOLP_44OLPSalivaOLP_SalivaOLP_Saliva
F73312.S72ERR12712244PRJEB73312South KoreaOLP_45OLPSalivaOLP_SalivaOLP_Saliva
F73312.S73ERR12712245PRJEB73312South KoreaOLP_46OLPSalivaOLP_SalivaOLP_Saliva
F73312.S74ERR12712246PRJEB73312South KoreaOLP_47OLPSalivaOLP_SalivaOLP_Saliva
F73312.S75ERR12712247PRJEB73312South KoreaOLP_48OLPSalivaOLP_SalivaOLP_Saliva
F73312.S76ERR12712248PRJEB73312South KoreaOLP_49OLPSalivaOLP_SalivaOLP_Saliva
F73312.S77ERR12712249PRJEB73312South KoreaOLP_50OLPSalivaOLP_SalivaOLP_Saliva
F73312.S78ERR12712250PRJEB73312South KoreaOLP_51OLPSalivaOLP_SalivaOLP_Saliva
F73312.S79ERR12712251PRJEB73312South KoreaOLP_52OLPSalivaOLP_SalivaOLP_Saliva
F73312.S80ERR12712252PRJEB73312South KoreaOLP_53OLPSalivaOLP_SalivaOLP_Saliva
F73312.S81ERR12712253PRJEB73312South KoreaOLP_54OLPSalivaOLP_SalivaOLP_Saliva
F73312.S82ERR12712254PRJEB73312South KoreaOLP_55OLPSalivaOLP_SalivaOLP_Saliva
F73312.S83ERR12712255PRJEB73312South KoreaOLP_56OLPSalivaOLP_SalivaOLP_Saliva
F73312.S84ERR12712256PRJEB73312South KoreaOLP_57OLPSalivaOLP_SalivaOLP_Saliva
F73312.S85ERR12712257PRJEB73312South KoreaOLP_58OLPSalivaOLP_SalivaOLP_Saliva
F73312.S86ERR12712258PRJEB73312South KoreaOLP_59OLPSalivaOLP_SalivaOLP_Saliva
F73312.S87ERR12712259PRJEB73312South KoreaOLP_60OLPSalivaOLP_SalivaOLP_Saliva
F598825.S01SRR10849321PRJNA598825SwedenOral mucosa from affected regions of oral lichen planus patientsOLPMucosaOLP_MucosaOLP_Mucosa
F598825.S02SRR10849322PRJNA598825SwedenBacterial community associated with the unaffected regions from oral mucosa of Oral Lichen Planus patientsUnaffectedMucosaUnaffected_MucosaUnaffected_Mucosa
F598825.S03SRR10849323PRJNA598825SwedenOral mucosa from affected regions of oral lichen planus patientsOLPMucosaOLP_MucosaOLP_Mucosa
F598825.S04SRR10849324PRJNA598825SwedenOral mucosa from affected regions of oral lichen planus patientsOLPMucosaOLP_MucosaOLP_Mucosa
F598825.S05SRR10849325PRJNA598825SwedenBacterial community associated with the unaffected regions from oral mucosa of Oral Lichen Planus patientsUnaffectedMucosaUnaffected_MucosaUnaffected_Mucosa
F598825.S06SRR10849326PRJNA598825SwedenOral mucosa from affected regions of oral lichen planus patientsOLPMucosaOLP_MucosaOLP_Mucosa
F598825.S07SRR10849327PRJNA598825SwedenOral mucosa from affected regions of oral lichen planus patientsOLPMucosaOLP_MucosaOLP_Mucosa
F598825.S08SRR10849328PRJNA598825SwedenOral mucosa of healthy patientsControlMucosaControl_MucosaControl_Mucosa
F598825.S09SRR10849329PRJNA598825SwedenOral mucosa of healthy patientsControlMucosaControl_MucosaControl_Mucosa
F598825.S10SRR10849330PRJNA598825SwedenOral mucosa of healthy patientsControlMucosaControl_MucosaControl_Mucosa
F598825.S11SRR10849331PRJNA598825SwedenOral mucosa of healthy patientsControlMucosaControl_MucosaControl_Mucosa
F598825.S12SRR10849332PRJNA598825SwedenOral mucosa of healthy patientsControlMucosaControl_MucosaControl_Mucosa
F598825.S13SRR10849333PRJNA598825SwedenOral mucosa of healthy patientsControlMucosaControl_MucosaControl_Mucosa
F598825.S14SRR10849334PRJNA598825SwedenOral mucosa of healthy patientsControlMucosaControl_MucosaControl_Mucosa
F598825.S15SRR10849335PRJNA598825SwedenOral mucosa of healthy patientsControlMucosaControl_MucosaControl_Mucosa
F598825.S16SRR10849336PRJNA598825SwedenOral mucosa of healthy patientsControlMucosaControl_MucosaControl_Mucosa
F598825.S17SRR10849337PRJNA598825SwedenOral mucosa of healthy patientsControlMucosaControl_MucosaControl_Mucosa
F598825.S18SRR10849338PRJNA598825SwedenBacterial community associated with the unaffected regions from oral mucosa of Oral Lichen Planus patientsUnaffectedMucosaUnaffected_MucosaUnaffected_Mucosa
F598825.S19SRR10849339PRJNA598825SwedenOral mucosa of healthy patientsControlMucosaControl_MucosaControl_Mucosa
F598825.S20SRR10849340PRJNA598825SwedenOral mucosa of healthy patientsControlMucosaControl_MucosaControl_Mucosa
F598825.S21SRR10849341PRJNA598825SwedenBacterial community associated with the unaffected regions from oral mucosa of Oral Lichen Planus patientsUnaffectedMucosaUnaffected_MucosaUnaffected_Mucosa
F598825.S22SRR10849342PRJNA598825SwedenOral mucosa from affected regions of oral lichen planus patientsOLPMucosaOLP_MucosaOLP_Mucosa
F598825.S23SRR10849343PRJNA598825SwedenOral mucosa from affected regions of oral lichen planus patientsOLPMucosaOLP_MucosaOLP_Mucosa
F598825.S24SRR10849344PRJNA598825SwedenBacterial community associated with the unaffected regions from oral mucosa of Oral Lichen Planus patientsUnaffectedMucosaUnaffected_MucosaUnaffected_Mucosa
F598825.S25SRR10849345PRJNA598825SwedenOral mucosa from affected regions of oral lichen planus patientsOLPMucosaOLP_MucosaOLP_Mucosa
F598825.S26SRR10849346PRJNA598825SwedenOral mucosa from affected regions of oral lichen planus patientsOLPMucosaOLP_MucosaOLP_Mucosa
F598825.S27SRR10849347PRJNA598825SwedenBacterial community associated with the unaffected regions from oral mucosa of Oral Lichen Planus patientsUnaffectedMucosaUnaffected_MucosaUnaffected_Mucosa
F598825.S28SRR10849348PRJNA598825SwedenOral mucosa from affected regions of oral lichen planus patientsOLPMucosaOLP_MucosaOLP_Mucosa
F598825.S29SRR10849349PRJNA598825SwedenOral mucosa from affected regions of oral lichen planus patientsOLPMucosaOLP_MucosaOLP_Mucosa
F598825.S30SRR10849350PRJNA598825SwedenOral mucosa from affected regions of oral lichen planus patientsOLPMucosaOLP_MucosaOLP_Mucosa
F756771.S01SRR15560286PRJNA756771ChinaOLP 2OLPSalivaOLP_SalivaOLP_Saliva
F756771.S02SRR15560287PRJNA756771ChinaOLP 1OLPSalivaOLP_SalivaOLP_Saliva
F756771.S03SRR15560288PRJNA756771ChinaOLP_HT 11OLPSalivaOLP_SalivaOLP_Saliva
F756771.S04SRR15560289PRJNA756771ChinaOLP_HT 2OLPSalivaOLP_SalivaOLP_Saliva
F756771.S05SRR15560290PRJNA756771ChinaOLP_HT 10OLPSalivaOLP_SalivaOLP_Saliva
F756771.S06SRR15560291PRJNA756771ChinaOLP_HT 9OLPSalivaOLP_SalivaOLP_Saliva
F756771.S07SRR15560292PRJNA756771ChinaOLP_HT 5OLPSalivaOLP_SalivaOLP_Saliva
F756771.S08SRR15560293PRJNA756771ChinaHC 12ControlSalivaControl_SalivaControl_Saliva
F756771.S09SRR15560294PRJNA756771ChinaHC 11ControlSalivaControl_SalivaControl_Saliva
F756771.S10SRR15560295PRJNA756771ChinaOLP_HT 8OLPSalivaOLP_SalivaOLP_Saliva
F756771.S11SRR15560296PRJNA756771ChinaHC 10ControlSalivaControl_SalivaControl_Saliva
F756771.S12SRR15560297PRJNA756771ChinaHC 9ControlSalivaControl_SalivaControl_Saliva
F756771.S13SRR15560298PRJNA756771ChinaHC 8ControlSalivaControl_SalivaControl_Saliva
F756771.S14SRR15560299PRJNA756771ChinaHC 7ControlSalivaControl_SalivaControl_Saliva
F756771.S15SRR15560300PRJNA756771ChinaHC 6ControlSalivaControl_SalivaControl_Saliva
F756771.S16SRR15560301PRJNA756771ChinaHC 5ControlSalivaControl_SalivaControl_Saliva
F756771.S17SRR15560302PRJNA756771ChinaHC 4ControlSalivaControl_SalivaControl_Saliva
F756771.S18SRR15560303PRJNA756771ChinaHC 3ControlSalivaControl_SalivaControl_Saliva
F756771.S19SRR15560304PRJNA756771ChinaHC 2ControlSalivaControl_SalivaControl_Saliva
F756771.S20SRR15560305PRJNA756771ChinaHC 1ControlSalivaControl_SalivaControl_Saliva
F756771.S21SRR15560306PRJNA756771ChinaOLP_HT 7OLPSalivaOLP_SalivaOLP_Saliva
F756771.S22SRR15560307PRJNA756771ChinaOLP_HT 4OLPSalivaOLP_SalivaOLP_Saliva
F756771.S23SRR15560308PRJNA756771ChinaOLP 10OLPSalivaOLP_SalivaOLP_Saliva
F756771.S24SRR15560309PRJNA756771ChinaOLP 9OLPSalivaOLP_SalivaOLP_Saliva
F756771.S25SRR15560310PRJNA756771ChinaOLP 8OLPSalivaOLP_SalivaOLP_Saliva
F756771.S26SRR15560311PRJNA756771ChinaOLP 7OLPSalivaOLP_SalivaOLP_Saliva
F756771.S27SRR15560312PRJNA756771ChinaOLP 6OLPSalivaOLP_SalivaOLP_Saliva
F756771.S28SRR15560313PRJNA756771ChinaOLP_HT 3OLPSalivaOLP_SalivaOLP_Saliva
F756771.S29SRR15560314PRJNA756771ChinaOLP 5OLPSalivaOLP_SalivaOLP_Saliva
F756771.S30SRR15560315PRJNA756771ChinaOLP 4OLPSalivaOLP_SalivaOLP_Saliva
F756771.S31SRR15560316PRJNA756771ChinaOLP 3OLPSalivaOLP_SalivaOLP_Saliva
F756771.S32SRR15560317PRJNA756771ChinaOLP_HT 6OLPSalivaOLP_SalivaOLP_Saliva
F756771.S33SRR15560318PRJNA756771ChinaOLP_HT 1OLPSalivaOLP_SalivaOLP_Saliva
F266382.S01SRR2064219PRJNA266382South KoreaControl1ControlMucosaControl_MucosaControl_Mucosa
F266382.S02SRR2064220PRJNA266382South KoreaControl2ControlMucosaControl_MucosaControl_Mucosa
F266382.S03SRR2064221PRJNA266382South KoreaControl3ControlMucosaControl_MucosaControl_Mucosa
F266382.S04SRR2064222PRJNA266382South KoreaControl4ControlMucosaControl_MucosaControl_Mucosa
F266382.S05SRR2064223PRJNA266382South KoreaControl5ControlMucosaControl_MucosaControl_Mucosa
F266382.S06SRR2064224PRJNA266382South KoreaControl6ControlMucosaControl_MucosaControl_Mucosa
F266382.S07SRR2064225PRJNA266382South KoreaControl7ControlMucosaControl_MucosaControl_Mucosa
F266382.S08SRR2064226PRJNA266382South KoreaControl8ControlMucosaControl_MucosaControl_Mucosa
F266382.S09SRR2064227PRJNA266382South KoreaControl9ControlMucosaControl_MucosaControl_Mucosa
F266382.S10SRR2064228PRJNA266382South KoreaControl10ControlMucosaControl_MucosaControl_Mucosa
F266382.S11SRR2064229PRJNA266382South KoreaControl11ControlMucosaControl_MucosaControl_Mucosa
F266382.S12SRR2064230PRJNA266382South KoreaControl12ControlMucosaControl_MucosaControl_Mucosa
F266382.S13SRR2064231PRJNA266382South KoreaControl13ControlMucosaControl_MucosaControl_Mucosa
F266382.S14SRR2064232PRJNA266382South KoreaControl14ControlMucosaControl_MucosaControl_Mucosa
F266382.S15SRR2064233PRJNA266382South KoreaControl15ControlMucosaControl_MucosaControl_Mucosa
F266382.S16SRR2064234PRJNA266382South KoreaControl16ControlMucosaControl_MucosaControl_Mucosa
F266382.S17SRR2064235PRJNA266382South KoreaControl17ControlMucosaControl_MucosaControl_Mucosa
F266382.S18SRR2064236PRJNA266382South KoreaControl18ControlMucosaControl_MucosaControl_Mucosa
F266382.S19SRR2064237PRJNA266382South KoreaControl19ControlMucosaControl_MucosaControl_Mucosa
F266382.S20SRR2064238PRJNA266382South KoreaRAUAL1UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S21SRR2064239PRJNA266382South KoreaRAUAL2UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S22SRR2064240PRJNA266382South KoreaRAUAL3UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S23SRR2064241PRJNA266382South KoreaRAUAL4UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S24SRR2064242PRJNA266382South KoreaRAUAL5UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S25SRR2064243PRJNA266382South KoreaRAUAL6UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S26SRR2064244PRJNA266382South KoreaRAUAL7UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S27SRR2064245PRJNA266382South KoreaRAUAL8UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S28SRR2064246PRJNA266382South KoreaRAUAL9UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S29SRR2064247PRJNA266382South KoreaRAUAL10UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S30SRR2064248PRJNA266382South KoreaRAUAL11UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S31SRR2064249PRJNA266382South KoreaRAUAL12UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S32SRR2064250PRJNA266382South KoreaRAUAL13UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S33SRR2064251PRJNA266382South KoreaRAUAL14UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S34SRR2064252PRJNA266382South KoreaRAUAL15UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S35SRR2064253PRJNA266382South KoreaRAUAL16UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S36SRR2064254PRJNA266382South KoreaRAUAL17UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S37SRR2064255PRJNA266382South KoreaRAUAL18UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S38SRR2064256PRJNA266382South KoreaRAUAL19UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S39SRR2064257PRJNA266382South KoreaRAUAL20UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S40SRR2064258PRJNA266382South KoreaRAUPS2UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S41SRR2064259PRJNA266382South KoreaRAUPS3UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S42SRR2064260PRJNA266382South KoreaRAUPS9UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S43SRR2064261PRJNA266382South KoreaRAUPS16UnknownMucosaUnknown_MucosaUnknown_Mucosa
F266382.S44SRR2064262PRJNA266382South KoreaControl1ControlSalivaControl_SalivaControl_Saliva
F266382.S45SRR2064263PRJNA266382South KoreaControl2ControlSalivaControl_SalivaControl_Saliva
F266382.S46SRR2064264PRJNA266382South KoreaControl3ControlSalivaControl_SalivaControl_Saliva
F266382.S47SRR2064265PRJNA266382South KoreaControl4ControlSalivaControl_SalivaControl_Saliva
F266382.S48SRR2064266PRJNA266382South KoreaControl5ControlSalivaControl_SalivaControl_Saliva
F266382.S49SRR2064267PRJNA266382South KoreaControl6ControlSalivaControl_SalivaControl_Saliva
F266382.S50SRR2064268PRJNA266382South KoreaControl7ControlSalivaControl_SalivaControl_Saliva
F266382.S51SRR2064269PRJNA266382South KoreaControl8ControlSalivaControl_SalivaControl_Saliva
F266382.S52SRR2064270PRJNA266382South KoreaRAUAL1UnknownSalivaUnknown_SalivaUnknown_Saliva
F266382.S53SRR2064271PRJNA266382South KoreaRAUAL2UnknownSalivaUnknown_SalivaUnknown_Saliva
F266382.S54SRR2064272PRJNA266382South KoreaRAUAL3UnknownSalivaUnknown_SalivaUnknown_Saliva
F266382.S55SRR2064273PRJNA266382South KoreaRAUAL4UnknownSalivaUnknown_SalivaUnknown_Saliva
F266382.S56SRR2064274PRJNA266382South KoreaRAUAL5UnknownSalivaUnknown_SalivaUnknown_Saliva
F266382.S57SRR2064275PRJNA266382South KoreaRAUAL6UnknownSalivaUnknown_SalivaUnknown_Saliva
F266382.S58SRR2064276PRJNA266382South KoreaRAUAL8UnknownSalivaUnknown_SalivaUnknown_Saliva
F266382.S59SRR2064277PRJNA266382South KoreaRAUAL9UnknownSalivaUnknown_SalivaUnknown_Saliva
F266382.S60SRR2064278PRJNA266382South KoreaRAUAL10UnknownSalivaUnknown_SalivaUnknown_Saliva
F1043432.S01SRR26896019PRJNA1043432ChinaOLP 51OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S02SRR26896030PRJNA1043432ChinaOLP 50OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S03SRR26896041PRJNA1043432ChinaOLP 49OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S04SRR26896052PRJNA1043432ChinaOLP 48OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S05SRR26896054PRJNA1043432ChinaControl 08ControlMucosaControl_MucosaControl_Mucosa
F1043432.S06SRR26896055PRJNA1043432ChinaControl 07ControlMucosaControl_MucosaControl_Mucosa
F1043432.S07SRR26896056PRJNA1043432ChinaControl 06ControlMucosaControl_MucosaControl_Mucosa
F1043432.S08SRR26896057PRJNA1043432ChinaOLP 15OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S09SRR26896058PRJNA1043432ChinaOLP 14OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S10SRR26896059PRJNA1043432ChinaOLP 13OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S11SRR26896060PRJNA1043432ChinaOLP 12OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S12SRR26896061PRJNA1043432ChinaOLP 11OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S13SRR26896062PRJNA1043432ChinaOLP 10OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S14SRR26896063PRJNA1043432ChinaOLP 47OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S15SRR26896064PRJNA1043432ChinaOLP 09OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S16SRR26896065PRJNA1043432ChinaOLP 08OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S17SRR26896066PRJNA1043432ChinaOLP 07OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S18SRR26896067PRJNA1043432ChinaOLP 06OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S19SRR26896068PRJNA1043432ChinaOLP 41OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S20SRR26896069PRJNA1043432ChinaOLP 40OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S21SRR26896070PRJNA1043432ChinaOLP 39OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S22SRR26896071PRJNA1043432ChinaOLP 38OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S23SRR26896072PRJNA1043432ChinaOLP 37OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S24SRR26896073PRJNA1043432ChinaOLP 36OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S25SRR26896074PRJNA1043432ChinaOLP 46OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S26SRR26896075PRJNA1043432ChinaOLP 35OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S27SRR26896076PRJNA1043432ChinaOLP 34OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S28SRR26896077PRJNA1043432ChinaOLP 33OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S29SRR26896078PRJNA1043432ChinaControl 05ControlMucosaControl_MucosaControl_Mucosa
F1043432.S30SRR26896079PRJNA1043432ChinaControl 04ControlMucosaControl_MucosaControl_Mucosa
F1043432.S31SRR26896080PRJNA1043432ChinaControl 03ControlMucosaControl_MucosaControl_Mucosa
F1043432.S32SRR26896081PRJNA1043432ChinaControl 02ControlMucosaControl_MucosaControl_Mucosa
F1043432.S33SRR26896082PRJNA1043432ChinaControl 01ControlMucosaControl_MucosaControl_Mucosa
F1043432.S34SRR26896083PRJNA1043432ChinaOLP 05OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S35SRR26896084PRJNA1043432ChinaOLP 04OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S36SRR26896085PRJNA1043432ChinaOLP 45OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S37SRR26896086PRJNA1043432ChinaOLP 03OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S38SRR26896087PRJNA1043432ChinaOLP 02OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S39SRR26896088PRJNA1043432ChinaOLP 01OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S40SRR26896089PRJNA1043432ChinaOLP 32OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S41SRR26896090PRJNA1043432ChinaOLP 31OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S42SRR26896091PRJNA1043432ChinaOLP 30OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S43SRR26896092PRJNA1043432ChinaOLP 29OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S44SRR26896093PRJNA1043432ChinaOLP 28OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S45SRR26896094PRJNA1043432ChinaOLP 27OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S46SRR26896095PRJNA1043432ChinaOLP 26OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S47SRR26896096PRJNA1043432ChinaOLP 44OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S48SRR26896097PRJNA1043432ChinaOLP 25OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S49SRR26896098PRJNA1043432ChinaControl 10ControlMucosaControl_MucosaControl_Mucosa
F1043432.S50SRR26896099PRJNA1043432ChinaControl 09ControlMucosaControl_MucosaControl_Mucosa
F1043432.S51SRR26896100PRJNA1043432ChinaOLP 24OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S52SRR26896101PRJNA1043432ChinaOLP 22OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S53SRR26896102PRJNA1043432ChinaOLP 21OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S54SRR26896103PRJNA1043432ChinaOLP 20OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S55SRR26896104PRJNA1043432ChinaOLP 19OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S56SRR26896105PRJNA1043432ChinaOLP 18OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S57SRR26896106PRJNA1043432ChinaOLP 17OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S58SRR26896107PRJNA1043432ChinaOLP 43OLPMucosaOLP_MucosaOLP_Mucosa
F1043432.S59SRR26896108PRJNA1043432ChinaOLP 42OLPMucosaOLP_MucosaOLP_Mucosa
F1049117.S01SRR27100551PRJNA1049117ChinaHC10ControlSalivaControl_SalivaControl_Saliva
F1049117.S02SRR27100552PRJNA1049117ChinaHC09ControlSalivaControl_SalivaControl_Saliva
F1049117.S03SRR27100553PRJNA1049117ChinaHC08ControlSalivaControl_SalivaControl_Saliva
F1049117.S04SRR27100554PRJNA1049117ChinaHC07ControlSalivaControl_SalivaControl_Saliva
F1049117.S05SRR27100555PRJNA1049117ChinaHC06ControlSalivaControl_SalivaControl_Saliva
F1049117.S06SRR27100556PRJNA1049117ChinaOLP21OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S07SRR27100557PRJNA1049117ChinaOLP20OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S08SRR27100558PRJNA1049117ChinaOLP19OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S09SRR27100559PRJNA1049117ChinaHC05ControlSalivaControl_SalivaControl_Saliva
F1049117.S10SRR27100560PRJNA1049117ChinaOLP18OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S11SRR27100561PRJNA1049117ChinaOLP17OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S12SRR27100562PRJNA1049117ChinaOLP16OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S13SRR27100563PRJNA1049117ChinaOLP15OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S14SRR27100564PRJNA1049117ChinaOLP14OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S15SRR27100565PRJNA1049117ChinaOLP13OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S16SRR27100566PRJNA1049117ChinaOLP12OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S17SRR27100567PRJNA1049117ChinaOLP11OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S18SRR27100568PRJNA1049117ChinaOLP10OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S19SRR27100569PRJNA1049117ChinaOLP09OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S20SRR27100570PRJNA1049117ChinaHC04ControlSalivaControl_SalivaControl_Saliva
F1049117.S21SRR27100571PRJNA1049117ChinaOLP08OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S22SRR27100572PRJNA1049117ChinaOLP07OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S23SRR27100573PRJNA1049117ChinaOLP06OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S24SRR27100574PRJNA1049117ChinaOLP05OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S25SRR27100575PRJNA1049117ChinaOLP04OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S26SRR27100576PRJNA1049117ChinaOLP03OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S27SRR27100577PRJNA1049117ChinaOLP02OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S28SRR27100578PRJNA1049117ChinaOLP01OLPSalivaOLP_SalivaOLP_Saliva
F1049117.S29SRR27100579PRJNA1049117ChinaHC22ControlSalivaControl_SalivaControl_Saliva
F1049117.S30SRR27100580PRJNA1049117ChinaHC21ControlSalivaControl_SalivaControl_Saliva
F1049117.S31SRR27100581PRJNA1049117ChinaHC03ControlSalivaControl_SalivaControl_Saliva
F1049117.S32SRR27100582PRJNA1049117ChinaHC20ControlSalivaControl_SalivaControl_Saliva
F1049117.S33SRR27100583PRJNA1049117ChinaHC19ControlSalivaControl_SalivaControl_Saliva
F1049117.S34SRR27100584PRJNA1049117ChinaHC18ControlSalivaControl_SalivaControl_Saliva
F1049117.S35SRR27100585PRJNA1049117ChinaHC17ControlSalivaControl_SalivaControl_Saliva
F1049117.S36SRR27100586PRJNA1049117ChinaHC16ControlSalivaControl_SalivaControl_Saliva
F1049117.S37SRR27100587PRJNA1049117ChinaHC15ControlSalivaControl_SalivaControl_Saliva
F1049117.S38SRR27100588PRJNA1049117ChinaHC14ControlSalivaControl_SalivaControl_Saliva
F1049117.S39SRR27100589PRJNA1049117ChinaHC13ControlSalivaControl_SalivaControl_Saliva
F1049117.S40SRR27100590PRJNA1049117ChinaHC12ControlSalivaControl_SalivaControl_Saliva
F1049117.S41SRR27100591PRJNA1049117ChinaHC11ControlSalivaControl_SalivaControl_Saliva
F1049117.S42SRR27100592PRJNA1049117ChinaHC02ControlSalivaControl_SalivaControl_Saliva
F1049117.S43SRR27100593PRJNA1049117ChinaHC01ControlSalivaControl_SalivaControl_Saliva
F295501.S01SRR2914373PRJNA295501South KoreaOLP2OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S02SRR2914374PRJNA295501South KoreaOLP8OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S03SRR2914375PRJNA295501South KoreaOLP9OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S04SRR2914376PRJNA295501South KoreaOLP13OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S05SRR2914377PRJNA295501South KoreaOLP5OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S06SRR2914378PRJNA295501South KoreaOLP10OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S07SRR2914379PRJNA295501South KoreaOLP16OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S08SRR2914380PRJNA295501South KoreaOLP19OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S09SRR2914381PRJNA295501South KoreaOLP3OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S10SRR2914382PRJNA295501South KoreaOLP6OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S11SRR2914383PRJNA295501South KoreaOLP12OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S12SRR2914384PRJNA295501South KoreaOLP14OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S13SRR2914385PRJNA295501South KoreaOLP15OLPMucosaOLP_MucosaOLP_Mucosa
F295501.S14SRR2989657PRJNA295501South KoreaOLP19OLPMucosaOLP_MucosaOLP_Mucosa
F556311.S01SRR9821833PRJNA556311ChinaHC20ControlSalivaControl_SalivaControl_Saliva
F556311.S02SRR9821834PRJNA556311ChinaHC19ControlSalivaControl_SalivaControl_Saliva
F556311.S03SRR9821835PRJNA556311ChinaOLP21OLPSalivaOLP_SalivaOLP_Saliva
F556311.S04SRR9821836PRJNA556311ChinaHC12ControlSalivaControl_SalivaControl_Saliva
F556311.S05SRR9821837PRJNA556311ChinaHC11ControlSalivaControl_SalivaControl_Saliva
F556311.S06SRR9821838PRJNA556311ChinaHC14ControlSalivaControl_SalivaControl_Saliva
F556311.S07SRR9821839PRJNA556311ChinaHC13ControlSalivaControl_SalivaControl_Saliva
F556311.S08SRR9821840PRJNA556311ChinaHC16ControlSalivaControl_SalivaControl_Saliva
F556311.S09SRR9821841PRJNA556311ChinaHC15ControlSalivaControl_SalivaControl_Saliva
F556311.S10SRR9821842PRJNA556311ChinaHC18ControlSalivaControl_SalivaControl_Saliva
F556311.S11SRR9821843PRJNA556311ChinaHC17ControlSalivaControl_SalivaControl_Saliva
F556311.S12SRR9821844PRJNA556311ChinaOLP38OLPSalivaOLP_SalivaOLP_Saliva
F556311.S13SRR9821845PRJNA556311ChinaOLP36OLPSalivaOLP_SalivaOLP_Saliva
F556311.S14SRR9821846PRJNA556311ChinaOLP34OLPSalivaOLP_SalivaOLP_Saliva
F556311.S15SRR9821847PRJNA556311ChinaOLP33OLPSalivaOLP_SalivaOLP_Saliva
F556311.S16SRR9821848PRJNA556311ChinaOLP44OLPSalivaOLP_SalivaOLP_Saliva
F556311.S17SRR9821849PRJNA556311ChinaOLP43OLPSalivaOLP_SalivaOLP_Saliva
F556311.S18SRR9821850PRJNA556311ChinaOLP41OLPSalivaOLP_SalivaOLP_Saliva
F556311.S19SRR9821851PRJNA556311ChinaOLP39OLPSalivaOLP_SalivaOLP_Saliva
F556311.S20SRR9821852PRJNA556311ChinaOLP46OLPSalivaOLP_SalivaOLP_Saliva
F556311.S21SRR9821853PRJNA556311ChinaOLP45OLPSalivaOLP_SalivaOLP_Saliva
F556311.S22SRR9821854PRJNA556311ChinaOLP47OLPSalivaOLP_SalivaOLP_Saliva
F556311.S23SRR9821855PRJNA556311ChinaOLP42OLPSalivaOLP_SalivaOLP_Saliva
F556311.S24SRR9821856PRJNA556311ChinaHC10ControlSalivaControl_SalivaControl_Saliva
F556311.S25SRR9821857PRJNA556311ChinaOLP27OLPSalivaOLP_SalivaOLP_Saliva
F556311.S26SRR9821858PRJNA556311ChinaHC4ControlSalivaControl_SalivaControl_Saliva
F556311.S27SRR9821859PRJNA556311ChinaHC3ControlSalivaControl_SalivaControl_Saliva
F556311.S28SRR9821860PRJNA556311ChinaHC2ControlSalivaControl_SalivaControl_Saliva
F556311.S29SRR9821861PRJNA556311ChinaHC1ControlSalivaControl_SalivaControl_Saliva
F556311.S30SRR9821862PRJNA556311ChinaHC8ControlSalivaControl_SalivaControl_Saliva
F556311.S31SRR9821863PRJNA556311ChinaHC7ControlSalivaControl_SalivaControl_Saliva
F556311.S32SRR9821864PRJNA556311ChinaHC6ControlSalivaControl_SalivaControl_Saliva
F556311.S33SRR9821865PRJNA556311ChinaHC5ControlSalivaControl_SalivaControl_Saliva
F556311.S34SRR9821866PRJNA556311ChinaOLP35OLPSalivaOLP_SalivaOLP_Saliva
F556311.S35SRR9821867PRJNA556311ChinaOLP31OLPSalivaOLP_SalivaOLP_Saliva
F556311.S36SRR9821868PRJNA556311ChinaOLP32OLPSalivaOLP_SalivaOLP_Saliva
F556311.S37SRR9821869PRJNA556311ChinaOLP22OLPSalivaOLP_SalivaOLP_Saliva
F556311.S38SRR9821870PRJNA556311ChinaOLP23OLPSalivaOLP_SalivaOLP_Saliva
F556311.S39SRR9821871PRJNA556311ChinaOLP25OLPSalivaOLP_SalivaOLP_Saliva
F556311.S40SRR9821872PRJNA556311ChinaOLP28OLPSalivaOLP_SalivaOLP_Saliva
F556311.S41SRR9821873PRJNA556311ChinaOLP3OLPSalivaOLP_SalivaOLP_Saliva
F556311.S42SRR9821874PRJNA556311ChinaOLP10OLPSalivaOLP_SalivaOLP_Saliva
F556311.S43SRR9821875PRJNA556311ChinaOLP13OLPSalivaOLP_SalivaOLP_Saliva
F556311.S44SRR9821876PRJNA556311ChinaOLP19OLPSalivaOLP_SalivaOLP_Saliva
F556311.S45SRR9821877PRJNA556311ChinaOLP14OLPSalivaOLP_SalivaOLP_Saliva
F556311.S46SRR9821878PRJNA556311ChinaOLP16OLPSalivaOLP_SalivaOLP_Saliva
F556311.S47SRR9821879PRJNA556311ChinaOLP9OLPSalivaOLP_SalivaOLP_Saliva
F556311.S48SRR9821880PRJNA556311ChinaOLP12OLPSalivaOLP_SalivaOLP_Saliva
F556311.S49SRR9821881PRJNA556311ChinaOLP6OLPSalivaOLP_SalivaOLP_Saliva
F556311.S50SRR9821882PRJNA556311ChinaOLP8OLPSalivaOLP_SalivaOLP_Saliva
F556311.S51SRR9821883PRJNA556311ChinaOLP2OLPSalivaOLP_SalivaOLP_Saliva
F556311.S52SRR9821884PRJNA556311ChinaOLP4OLPSalivaOLP_SalivaOLP_Saliva
F556311.S53SRR9821885PRJNA556311ChinaOLP17OLPSalivaOLP_SalivaOLP_Saliva
F556311.S54SRR9821886PRJNA556311ChinaOLP20OLPSalivaOLP_SalivaOLP_Saliva
F556311.S55SRR9821887PRJNA556311ChinaOLP29OLPSalivaOLP_SalivaOLP_Saliva
F556311.S56SRR9821888PRJNA556311ChinaOLP30OLPSalivaOLP_SalivaOLP_Saliva
F556311.S57SRR9821889PRJNA556311ChinaOLP40OLPSalivaOLP_SalivaOLP_Saliva
F556311.S58SRR9821890PRJNA556311ChinaHC9ControlSalivaControl_SalivaControl_Saliva
F556311.S59SRR9821891PRJNA556311ChinaOLP37OLPSalivaOLP_SalivaOLP_Saliva
F556311.S60SRR9821892PRJNA556311ChinaOLP26OLPSalivaOLP_SalivaOLP_Saliva
 
 

ASV Read Counts by Samples

#Sample IDRead Count
F266382.S281,263
F266382.S302,421
F266382.S512,516
F266382.S082,516
F266382.S222,569
F266382.S382,618
F266382.S232,717
F266382.S212,897
F295501.S043,214
F295501.S093,815
F266382.S584,606
F266382.S335,051
F266382.S545,265
F266382.S425,334
F266382.S465,386
F266382.S295,452
F266382.S095,474
F295501.S115,560
F266382.S195,637
F266382.S555,670
F266382.S055,783
F266382.S565,885
F295501.S135,927
F295501.S086,120
F295501.S126,153
F266382.S536,227
F266382.S526,398
F266382.S456,415
F266382.S486,460
F295501.S106,757
F266382.S446,852
F266382.S047,022
F266382.S367,036
F266382.S177,133
F266382.S247,203
F266382.S377,219
F266382.S327,331
F266382.S577,367
F295501.S057,420
F266382.S137,503
F266382.S407,523
F266382.S277,725
F266382.S027,772
F266382.S477,823
F266382.S508,070
F295501.S148,257
F266382.S498,326
F266382.S118,528
F266382.S168,807
F295501.S018,851
F266382.S418,982
F295501.S078,989
F266382.S609,114
F295501.S039,163
F266382.S399,237
F295501.S069,256
F266382.S319,312
F266382.S039,367
F266382.S019,720
F266382.S189,814
F266382.S349,873
F266382.S1510,018
F266382.S2510,224
F266382.S0610,755
F266382.S1010,847
F266382.S2610,982
F266382.S2011,251
F266382.S1211,424
F266382.S3511,680
F295501.S0212,165
F266382.S0712,759
F266382.S1414,096
F266382.S4314,134
F266382.S5915,193
F73312.S4716,497
F1043432.S2422,193
F73312.S7822,390
F73312.S0826,365
F756771.S1026,686
F756771.S2226,992
F1043432.S1327,070
F1049117.S0729,202
F756771.S2129,704
F1049117.S3829,711
F556311.S1330,419
F756771.S0530,444
F756771.S1730,478
F756771.S2430,560
F756771.S0630,700
F756771.S0330,711
F73312.S3230,763
F756771.S0730,782
F1043432.S5631,179
F756771.S3231,487
F1049117.S4131,546
F1043432.S1731,602
F1049117.S3531,606
F1049117.S3231,707
F1049117.S2931,784
F756771.S2031,830
F756771.S0432,239
F756771.S1132,249
F756771.S0832,309
F1049117.S3432,477
F756771.S1432,549
F73312.S3932,693
F756771.S1332,865
F756771.S2832,908
F556311.S5032,912
F1049117.S3932,922
F1049117.S1133,128
F1043432.S5233,262
F73312.S5533,303
F1049117.S1433,392
F1049117.S3333,463
F756771.S1833,496
F1049117.S0634,098
F1049117.S1534,107
F756771.S2734,162
F756771.S0134,175
F756771.S1234,245
F556311.S3134,405
F756771.S2534,454
F756771.S3134,526
F756771.S3334,677
F1049117.S0834,698
F1049117.S4034,719
F73312.S2734,723
F756771.S2334,746
F1049117.S3635,260
F1049117.S3735,282
F756771.S1935,439
F1049117.S1035,726
F1043432.S0335,788
F756771.S2636,021
F73312.S6336,068
F756771.S1636,108
F756771.S1536,419
F1043432.S1536,504
F556311.S2636,807
F1043432.S3636,918
F1049117.S1236,976
F556311.S0637,420
F556311.S3837,487
F556311.S5137,501
F1049117.S3039,085
F756771.S0939,465
F756771.S2939,510
F1043432.S0639,764
F1049117.S1639,967
F73312.S1340,446
F1049117.S1340,483
F756771.S0240,887
F1043432.S5941,174
F756771.S3041,241
F73312.S7041,469
F73312.S8042,916
F1043432.S1642,993
F556311.S2943,027
F1043432.S5444,372
F1043432.S5745,080
F556311.S4345,363
F1043432.S3445,416
F556311.S4545,474
F556311.S2246,230
F1043432.S5546,911
F73312.S4347,029
F1043432.S1447,097
F1043432.S0547,132
F1043432.S2747,378
F556311.S4847,538
F556311.S3247,689
F556311.S5347,879
F1043432.S2247,997
F556311.S5448,357
F1043432.S4448,489
F1043432.S3748,678
F556311.S0348,828
F73312.S4949,176
F556311.S1049,449
F1043432.S1249,809
F556311.S0149,813
F556311.S2850,083
F73312.S2250,664
F1043432.S0850,993
F1043432.S4551,016
F1043432.S1851,421
F556311.S3051,892
F1043432.S1152,042
F1043432.S2952,381
F73312.S7352,730
F556311.S1252,832
F556311.S4752,841
F556311.S2452,868
F556311.S5652,904
F556311.S0452,924
F73312.S7453,064
F1043432.S2153,420
F1043432.S1953,521
F1043432.S5353,617
F1043432.S3153,744
F1043432.S4853,767
F73312.S4154,331
F556311.S3754,388
F1049117.S2554,520
F1049117.S2454,660
F556311.S2754,878
F556311.S2154,884
F556311.S1555,102
F1049117.S0955,253
F1049117.S2355,363
F1043432.S4655,775
F556311.S4255,903
F556311.S0556,006
F1043432.S2356,318
F1049117.S0256,772
F1043432.S0456,975
F556311.S5857,026
F1043432.S2057,240
F556311.S3457,438
F556311.S3557,658
F1043432.S2657,712
F556311.S0257,911
F1043432.S3857,955
F1043432.S0958,078
F1049117.S1958,232
F1043432.S0758,243
F1043432.S2558,423
F556311.S4458,453
F1043432.S5058,762
F1043432.S3959,031
F556311.S4959,088
F556311.S3959,409
F1043432.S5160,068
F1043432.S3060,210
F1043432.S4060,229
F73312.S5960,502
F1049117.S1760,553
F556311.S5760,628
F73312.S2160,768
F556311.S2060,781
F556311.S5961,130
F556311.S0961,322
F73312.S6461,487
F73312.S2961,581
F1049117.S2061,935
F1043432.S4362,022
F556311.S3362,247
F556311.S0862,670
F1043432.S5863,071
F1049117.S0163,082
F556311.S1763,183
F556311.S0763,233
F73312.S0763,465
F1043432.S2863,673
F598825.S0663,683
F556311.S6063,749
F1043432.S3564,085
F556311.S4664,198
F1049117.S2164,417
F1049117.S1864,454
F1043432.S4964,546
F1043432.S4164,687
F1043432.S4765,026
F556311.S5565,145
F1043432.S4265,287
F1043432.S1065,485
F1043432.S3365,594
F1043432.S3265,912
F556311.S1666,035
F556311.S4166,158
F1049117.S2766,759
F556311.S1166,770
F73312.S0966,948
F73312.S1066,994
F1049117.S2266,998
F1043432.S0167,646
F1049117.S2667,803
F73312.S2468,361
F556311.S1868,694
F73312.S0168,775
F556311.S3669,333
F73312.S7669,623
F73312.S3569,936
F556311.S2570,189
F598825.S0970,997
F1043432.S0271,270
F556311.S1471,593
F73312.S7972,091
F73312.S5773,068
F73312.S1773,426
F73312.S2873,449
F73312.S5174,661
F73312.S0274,817
F598825.S2277,104
F73312.S7777,714
F556311.S5277,849
F556311.S2378,227
F73312.S2378,506
F73312.S8179,366
F556311.S4080,870
F1049117.S4380,955
F598825.S0381,528
F1049117.S2881,659
F598825.S2982,123
F73312.S5082,155
F1049117.S0482,280
F1049117.S0583,585
F556311.S1983,907
F598825.S1384,443
F598825.S0484,564
F598825.S2184,845
F598825.S2687,169
F73312.S7587,940
F1049117.S4288,075
F1049117.S3188,127
F598825.S1589,043
F598825.S0789,328
F73312.S4089,634
F73312.S5489,758
F1049117.S0390,540
F598825.S1691,098
F598825.S1991,163
F598825.S1491,765
F598825.S2091,890
F598825.S0293,680
F73312.S8794,037
F598825.S0894,096
F73312.S2694,196
F73312.S3494,915
F73312.S6295,003
F73312.S5895,694
F598825.S1296,096
F598825.S1796,157
F598825.S2896,277
F598825.S0598,722
F73312.S5698,964
F73312.S4299,032
F73312.S8599,963
F73312.S14101,356
F73312.S61101,490
F73312.S31102,802
F598825.S01105,091
F73312.S83105,197
F73312.S20105,406
F73312.S53105,538
F73312.S03105,760
F73312.S52106,013
F73312.S38106,163
F598825.S30106,327
F598825.S10107,451
F73312.S60107,456
F73312.S30109,218
F598825.S18110,882
F73312.S37111,179
F73312.S84111,815
F598825.S23112,623
F598825.S25113,329
F73312.S82113,585
F73312.S48117,525
F598825.S24118,682
F598825.S11119,612
F73312.S33119,634
F73312.S46119,966
F73312.S36120,564
F73312.S15122,150
F73312.S45122,931
F73312.S18123,384
F73312.S86123,768
F73312.S44126,939
F73312.S06127,957
F598825.S27128,972
F73312.S12135,453
F73312.S66139,185
F73312.S19143,743
F73312.S25153,483
F73312.S72154,072
F73312.S11168,492
F73312.S65187,200
F73312.S16210,045
F73312.S04219,069
F73312.S69229,833
F73312.S68238,415
F73312.S71250,257
F73312.S67256,273
F73312.S05268,019
 
 
 

VII. Analysis - Read Taxonomy Assignment

Read Taxonomy Assignment - Methods

 

The close-reference taxonomy assignment of the ASV sequences using BLASTN is based on the algorithm published by Al-Hebshi et. al. (2015)[2].

The species-level, open-reference 16S rRNA NGS reads taxonomy assignment pipeline

Version 20210310a
 
 

1. Raw sequences reads in FASTA format were BLASTN-searched against a combined set of 16S rRNA reference sequences - the FOMC 16S rRNA Reference Sequences version 20221029 (https://microbiome.forsyth.org/ftp/refseq/). This set consists of the HOMD (version 15.22 http://www.homd.org/index.php?name=seqDownload&file&type=R ), Mouse Oral Microbiome Database (MOMD version 5.1 https://momd.org/ftp/16S_rRNA_refseq/MOMD_16S_rRNA_RefSeq/V5.1/), and the NCBI 16S rRNA reference sequence set (https://ftp.ncbi.nlm.nih.gov/blast/db/16S_ribosomal_RNA.tar.gz). These sequences were screened and combined to remove short sequences (<1000nt), chimera, duplicated and sub-sequences, as well as sequences with poor taxonomy annotation (e.g., without species information). This process resulted in 1,015 full-length 16S rRNA sequences from HOMD V15.22, 356 from MOMD V5.1, and 22,126 from NCBI, a total of 23,497 sequences. Altogether these sequence represent a total of 17,035 oral and non-oral microbial species.

The NCBI BLASTN version 2.7.1+ (Zhang et al, 2000) [3] was used with the default parameters. Reads with ≥ 98% sequence identity to the matched reference and ≥ 90% alignment length (i.e., ≥ 90% of the read length that was aligned to the reference and was used to calculate the sequence percent identity) were classified based on the taxonomy of the reference sequence with highest sequence identity. If a read matched with reference sequences representing more than one species with equal percent identity and alignment length, it was subject to chimera checking with USEARCH program version v8.1.1861 (Edgar 2010). Non-chimeric reads with multi-species best hits were considered valid and were assigned with a unique species notation (e.g., spp) denoting unresolvable multiple species.

2. Unassigned reads (i.e., reads with < 98% identity or < 90% alignment length) were pooled together and reads < 200 bases were removed. The remaining reads were subject to the de novo operational taxonomy unit (OTU) calling and chimera checking using the USEARCH program version v8.1.1861 (Edgar 2010)[4]. The de novo OTU calling and chimera checking was done using 98% as the sequence identity cutoff, i.e., the species-level OTU. The output of this step produced species-level de novo clustered OTUs with 98% identity. Representative reads from each of the OTUs/species were then BLASTN-searched against the same reference sequence set again to determine the closest species for these potential novel species. These potential novel species were pooled together with the reads that were signed to specie-level in the previous step, for down-stream analyses.

Reference:

  1. Al-Hebshi NN, Nasher AT, Idris AM, Chen T. Robust species taxonomy assignment algorithm for 16S rRNA NGS reads: application to oral carcinoma samples. J Oral Microbiol. 2015 Sep 29;7:28934. doi: 10.3402/jom.v7.28934. PMID: 26426306; PMCID: PMC4590409.
  2. Zhang Z, Schwartz S, Wagner L, Miller W. A greedy algorithm for aligning DNA sequences. J Comput Biol. 2000 Feb-Apr;7(1-2):203-14. doi: 10.1089/10665270050081478. PMID: 10890397.
  3. Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010 Oct 1;26(19):2460-1. doi: 10.1093/bioinformatics/btq461. Epub 2010 Aug 12. PubMed PMID: 20709691.
  4. 3. Designations used in the taxonomy:

    	1) Taxonomy levels are indicated by these prefixes:
    	
    	   k__: domain/kingdom
    	   p__: phylum
    	   c__: class
    	   o__: order
    	   f__: family
    	   g__: genus  
    	   s__: species
    	
    	   Example: 
    	
    	   k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__faecis
    		
    	2) Unique level identified – known species:
    	   
    	   k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia;s__hominis
    	
    	   The above example shows some reads match to a single species (all levels are unique)
    	
    	3) Non-unique level identified – known species:
    
    	   k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia;s__multispecies_spp123_3
    	   
    	   The above example “s__multispecies_spp123_3” indicates certain reads equally match to 3 species of the 
    	   genus Roseburia; the “spp123” is a temporally assigned species ID.
    	
    	   k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__multigenus;s__multispecies_spp234_5
    	   
    	   The above example indicates certain reads match equally to 5 different species, which belong to multiple genera.; 
    	   the “spp234” is a temporally assigned species ID.
    	
    	4) Unique level identified – unknown species, potential novel species:
    	   
    	   k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia;s__ hominis_nov_97%
    	   
    	   The above example indicates that some reads have no match to any of the reference sequences with 
    	   sequence identity ≥ 98% and percent coverage (alignment length)  ≥ 98% as well. However this groups 
    	   of reads (actually the representative read from a de novo  OTU) has 96% percent identity to 
    	   Roseburia hominis, thus this is a potential novel species, closest to Roseburia hominis. 
    	   (But they are not the same species).
    	
    	5) Multiple level identified – unknown species, potential novel species:
    	   k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia;s__ multispecies_sppn123_3_nov_96%
    	
    	   The above example indicates that some reads have no match to any of the reference sequences 
    	   with sequence identity ≥ 98% and percent coverage (alignment length)  ≥ 98% as well. 
    	   However this groups of reads (actually the representative read from a de novo  OTU) 
    	   has 96% percent identity equally to 3 species in Roseburia. Thus this is no single 
    	   closest species, instead this group of reads match equally to multiple species at 96%. 
    	   Since they have passed chimera check so they represent a novel species. “sppn123” is a 
    	   temporary ID for this potential novel species. 
    

 
4. The taxonomy assignment algorithm is illustrated in this flow char below:
 
 
 
 

Read Taxonomy Assignment - Result Summary *

CodeCategoryMPC=0% (>=1 read)MPC=0.01%(>=2122 reads)
ATotal reads21,813,23321,813,233
BTotal assigned reads21,228,04521,228,045
CAssigned reads in species with read count < MPC0549,139
DAssigned reads in samples with read count < 5003731,660
ETotal samples386386
FSamples with reads >= 500384377
GSamples with reads < 50029
HTotal assigned reads used for analysis (B-C-D)21,227,67220,677,246
IReads assigned to single species16,993,88816,715,623
JReads assigned to multiple species3,492,5863,426,041
KReads assigned to novel species741,198535,582
LTotal number of species2,377416
MNumber of single species1,516322
NNumber of multi-species30735
ONumber of novel species55359
PTotal unassigned reads585,188585,188
QChimeric reads87,72287,722
RReads without BLASTN hits75,80875,808
SOthers: short, low quality, singletons, etc.421,658421,658
A=B+P=C+D+H+Q+R+S
E=F+G
B=C+D+H
H=I+J+K
L=M+N+O
P=Q+R+S
* MPC = Minimal percent (of all assigned reads) read count per species, species with read count < MPC were removed.
* Samples with reads < 500 were removed from downstream analyses.
* The assignment result from MPC=0.1% was used in the downstream analyses.
 
 
 

Read Taxonomy Assignment - ASV Species-Level Read Counts Table

This table shows the read counts for each sample (columns) and each species identified based on the ASV sequences. The downstream analyses were based on this table.
SPIDTaxonomyF1043432.S01F1043432.S02F1043432.S03F1043432.S04F1043432.S05F1043432.S06F1043432.S07F1043432.S08F1043432.S09F1043432.S10F1043432.S11F1043432.S12F1043432.S13F1043432.S14F1043432.S15F1043432.S16F1043432.S17F1043432.S18F1043432.S19F1043432.S20F1043432.S21F1043432.S22F1043432.S23F1043432.S24F1043432.S25F1043432.S26F1043432.S27F1043432.S28F1043432.S29F1043432.S30F1043432.S31F1043432.S32F1043432.S33F1043432.S34F1043432.S35F1043432.S36F1043432.S37F1043432.S38F1043432.S39F1043432.S40F1043432.S41F1043432.S42F1043432.S43F1043432.S44F1043432.S45F1043432.S46F1043432.S47F1043432.S48F1043432.S49F1043432.S50F1043432.S51F1043432.S52F1043432.S53F1043432.S54F1043432.S55F1043432.S56F1043432.S57F1043432.S58F1043432.S59F1049117.S01F1049117.S02F1049117.S03F1049117.S04F1049117.S05F1049117.S06F1049117.S07F1049117.S08F1049117.S09F1049117.S10F1049117.S11F1049117.S12F1049117.S13F1049117.S14F1049117.S15F1049117.S16F1049117.S17F1049117.S18F1049117.S19F1049117.S20F1049117.S21F1049117.S22F1049117.S23F1049117.S24F1049117.S25F1049117.S26F1049117.S27F1049117.S28F1049117.S29F1049117.S30F1049117.S31F1049117.S32F1049117.S33F1049117.S34F1049117.S35F1049117.S36F1049117.S37F1049117.S38F1049117.S39F1049117.S40F1049117.S41F1049117.S42F1049117.S43F266382.S01F266382.S02F266382.S03F266382.S04F266382.S05F266382.S06F266382.S07F266382.S08F266382.S09F266382.S10F266382.S11F266382.S12F266382.S13F266382.S14F266382.S15F266382.S16F266382.S17F266382.S18F266382.S19F266382.S20F266382.S21F266382.S22F266382.S23F266382.S24F266382.S25F266382.S26F266382.S27F266382.S28F266382.S29F266382.S30F266382.S31F266382.S32F266382.S33F266382.S34F266382.S35F266382.S36F266382.S37F266382.S38F266382.S39F266382.S40F266382.S41F266382.S42F266382.S43F266382.S44F266382.S45F266382.S46F266382.S47F266382.S48F266382.S49F266382.S50F266382.S51F266382.S52F266382.S53F266382.S54F266382.S55F266382.S56F266382.S57F266382.S58F266382.S59F266382.S60F295501.S01F295501.S02F295501.S03F295501.S04F295501.S05F295501.S06F295501.S07F295501.S08F295501.S09F295501.S10F295501.S11F295501.S12F295501.S13F295501.S14F556311.S01F556311.S02F556311.S03F556311.S04F556311.S05F556311.S06F556311.S07F556311.S08F556311.S09F556311.S10F556311.S11F556311.S12F556311.S13F556311.S14F556311.S15F556311.S16F556311.S17F556311.S18F556311.S19F556311.S20F556311.S21F556311.S22F556311.S23F556311.S24F556311.S25F556311.S26F556311.S27F556311.S28F556311.S29F556311.S30F556311.S31F556311.S32F556311.S33F556311.S34F556311.S35F556311.S36F556311.S37F556311.S38F556311.S39F556311.S40F556311.S41F556311.S42F556311.S43F556311.S44F556311.S45F556311.S46F556311.S47F556311.S48F556311.S49F556311.S50F556311.S51F556311.S52F556311.S53F556311.S54F556311.S55F556311.S56F556311.S57F556311.S58F556311.S59F556311.S60F598825.S01F598825.S02F598825.S03F598825.S04F598825.S05F598825.S06F598825.S07F598825.S08F598825.S09F598825.S10F598825.S11F598825.S12F598825.S13F598825.S14F598825.S15F598825.S16F598825.S17F598825.S18F598825.S19F598825.S20F598825.S21F598825.S22F598825.S23F598825.S24F598825.S25F598825.S26F598825.S27F598825.S28F598825.S29F598825.S30F73312.S01F73312.S02F73312.S03F73312.S04F73312.S05F73312.S06F73312.S07F73312.S08F73312.S09F73312.S10F73312.S11F73312.S12F73312.S13F73312.S14F73312.S15F73312.S16F73312.S17F73312.S18F73312.S19F73312.S20F73312.S21F73312.S22F73312.S23F73312.S24F73312.S25F73312.S26F73312.S27F73312.S28F73312.S29F73312.S30F73312.S31F73312.S32F73312.S33F73312.S34F73312.S35F73312.S36F73312.S37F73312.S38F73312.S39F73312.S40F73312.S41F73312.S42F73312.S43F73312.S44F73312.S45F73312.S46F73312.S47F73312.S48F73312.S49F73312.S50F73312.S51F73312.S52F73312.S53F73312.S54F73312.S55F73312.S56F73312.S57F73312.S58F73312.S59F73312.S60F73312.S61F73312.S62F73312.S63F73312.S64F73312.S65F73312.S66F73312.S67F73312.S68F73312.S69F73312.S70F73312.S71F73312.S72F73312.S73F73312.S74F73312.S75F73312.S76F73312.S77F73312.S78F73312.S79F73312.S80F73312.S81F73312.S82F73312.S83F73312.S84F73312.S85F73312.S86F73312.S87F756771.S01F756771.S02F756771.S03F756771.S04F756771.S05F756771.S06F756771.S07F756771.S08F756771.S09F756771.S10F756771.S11F756771.S12F756771.S13F756771.S14F756771.S15F756771.S16F756771.S17F756771.S18F756771.S19F756771.S20F756771.S21F756771.S22F756771.S23F756771.S24F756771.S25F756771.S26F756771.S27F756771.S28F756771.S29F756771.S30F756771.S31F756771.S32F756771.S33
SP1Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Dialister;invisus3051225791210103926241313742416132514266528025100432872650211401954206241762030455610234237160134182025586818353331377377713174279966210354900017038591351050342623246659236613738211006004780198160000000000000000000000000000000000000000000000000000000000000000000000000001334327141351161004704771471182431971086022167311396571485302601541615733001572022813701749025000161113973610009669123852134131931291511196120166911081150008084213301911665033793023112942186453217500311290131181451422045461321120671081994588844943139353393124392620192704014814264045221071712200414903599220218715738436542535293039361617714117012901527020831190078250149016898942901700600603763382110060052807406220492800011108
SP10Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_3138603778551009850108000013531600096012430082400003729100192937026827180151358368571924116444143014577450884809273029686322000249140000460001320181059501800201776390414516007540419340257203200000000000000000000000000000000000000000000000000000000000000000000000000001181702134660811052290000000287885530003787900171001265520020017728218201279670017501327964811140000011402040014304920037407300000666991000015023904200058130370003338203218628715811903253312513178871218286385402881242831003020132350719077438223717600171314004621014184637514383073214103865549231200821772945118023731275521171716743801688411456108819572136002904358431472041287525099416002900201900113427242409583028000009220320008018
SP100Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_47200600100004000150120212422208305500001700000041001201305603300140000011000014035630000800280140009000382400005700024000000001029000000000000000000000000000000000000000000000000000000000000000000000000000000006617800004711200014413500000007800000000800005006400000000000053053020000000000000000531000000000141429180000321926230019004513001803300000000283623216500000000085018010000080000111000028000000003249174030310001117600035045000015001500048005250000000080000901712229000
SP101Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;infantis0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026800000000001250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002270142617941672867133438247312611236153130373479176011021318772795623733438168346228462315588108541914228119551700122236832016152211165015366456531206223361225863793989581238227541235346751418190716586733137214215407442977421932438385106616922550167190995910865271113171302708342825120298398024323181321826253543267360532733671000000000000000000000000000000000
SP102Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Haemophilus;haemolyticus20045010431171860516055978511870867962266351547839463942286274330606354084117276898920755344582652396624423161388121429053938326002246352532521998764061670165871628401626427096891185428731630573200270132254781150674039226561342782243669810942903772161502721200372001236120000000000000000000000000000000000000000000000000000000000000000000000000007812167000000278110160087055135000695116305411764362902920000101310540000000550027384366001181000054661212500006372610000003946200695522470951300093170001700785700034067475753103146862922517500001104310832000280310304300223132344043149000001616000023902200007463589400387528491842000152800932056011625401711510001098037921720027212004020000731610450002705140
SP1033Bacteria;Firmicutes;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus;faecalis00080000000000010200537500000000000000000000000000000000000000600000000000000000023900021800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000040000000000000000000000000000000000000040000000400000000000000000000000000000000000000000000000000000
SP104Bacteria;Firmicutes;Bacilli;Bacillales;Gemellaceae;Gemella;sanguinis355911011972403102582025073240240000033013336003800107055029027099000430625538026760721065200000647661312641003521401506694796602715165206145332711749339592054135964031932931427342321519287164103830000000000000000000000000000000000000000000000000000000000000000000000000091524071934137026025217667972913981621467849854250861577224111927643823473271598780188011700384564422572442657100332339139898822478048348914810899860226446208544912248180291127115203013724996746765181215024621951753857461454601291741151412763424315613378028241043193319343568881365206120834461960392126724401793845239238752132104394356020244036222714812362803252812655783419287240216271033321500772785749125106346013712331716110734156155726112511031248655229913926034058683381865436135548896317078542817473810229646215263051903340514101888629421247459343021896271520056137041310293144734232154948916493437372140689719816601130
SP1043Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Peptostreptococcaceae_[XI][G-4];sp._oral_taxon_36900000000002200000050000000040010570120004500070058000000005015964111608100237001530150200070000056012020614617000041013813000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118000250115109690000000023000240032012146000001100002201003711940000032825903500000028000716531000260018401700207080140054500230012302100047245656700910516060000021400026020019000020016617000044013330100250020156016036
SP105Bacteria;Actinobacteria;Actinobacteria;Corynebacteriales;Corynebacteriaceae;Corynebacterium;matruchotii372629520451901231738523376240872830224127276847001202644615207928144175103276913368232382275065249916191646144151241683457440031063630210540086500260943205520100129018656111463102444523140250440670160000000000000000000000000000000000000000000000000000000000000000000000000000830503112817169213544008728324333802180831773411852621740127005728801220680050900924403474512780003303481075862062272416005820001631775105195500129281108011607410673292119815714079251121601691141600613327183181448208471421459078146188028617410921413653127442753810579571770138611562984609612605337177650124152110521948055117106114450134571114192664230586884150732876051135852346036570270021000647004613170260460680220312100806700270
SP1050Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Comamonadaceae;Comamonas;aquatica00002152757000005001693051373862600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP106Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Selenomonas;sp._oral_taxon_149000000000000000000000000300000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004100323424430019046410593337622568163200340190000011102200022000012276511000150055003700000000375030116340050501052302401800174416900300000000000000000000000000000000170
SP1061Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Peptostreptococcaceae_[XI][G-6];[Eubacterium]_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
SP1063Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._Oral_Taxon_B6600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000526115000066861393000053402716000290001230000000000002400000330000000180300004500000002600550000028000000000000000000000000000000000000000000
SP109Bacteria;Bacteroidetes;Bacteroidetes_[C-1];Bacteroidetes_[O-1];Bacteroidetes_[F-1];Bacteroidetes_[G-3];sp._oral_taxon_36560000004000003000200000002000300640096500013060553000000500040000014090309006140000000000000140005000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002361915000000000004412300000002300000000000000002920003900010190000000000000000000112000000000700007923000149230001507900016104060440140016191910290850000017090272750000174900800008000230024000000000451100614018000014000500009000015093055900089
SP11Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Porphyromonas;catoniae14000000029212300000001412150130000000020000000235547043032200000000000160210000002788000450000000013032220700000000012002931000022470000000000000000000000000000000000000000000000000000000000000000000000000000000001870000000000000046019000005000000000315059040004818000370000003800000101110000000001322000050000000000096179163038501161513370505215930218260196420501861290000571291012680033000001904469053504300000000002219018012626126724715013500164190190031005203900000100000000012005231000000000903000000
SP110Bacteria;Proteobacteria;Gammaproteobacteria;Cardiobacteriales;Cardiobacteriaceae;Cardiobacterium;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
SP111Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;oris154094304818620421281000106632741662137452120916229463750753600441991121155178119324285200441146148197159278213124770279688369078112748154658829218141910512259477404715711017130514171353160771352113575142159349975163201974915660132020453213853830150630000000000000000000000000000000000000000000000000000000000000000000000000024808209000000006211104480168011602922531407625301258805400014968044730018115100900059104312116227031645915654055007113889024020915221034445613627488414082416120842275321216838140163002645230345513619316120730630445206249747154201232152896313142575288062434599934221292111021103927235044646236961894686347971052878051883318114903451065282594668151340175418412242592833155122235391031152648121215848207331163177541640139560010550227114002025381377400153044511620159228527171383572
SP1132Bacteria;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;faecis000000000000000000000000900000000000000000000000853638557427624212167730100200700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP1144Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia;pickettii0000090171226626773757038347149691641016519821200014016181646415500620018210010320433123947023015519583320610934600000063900000007637434967434130763164770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP116Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium;sp._HOT_2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000048027881654100299212914504787790140590314301087052094032025450237237243450490373321980208068022128001027783169212815819321338671698510022923615214026677139000001930604631000000000000000000000000000000000
SP117Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Lachnospiraceae_[G-2];sp._oral_taxon_096120700000000000000000000000000800068000000000000210064000100007000003400000000001400000000000000006007000581600000000000000000000000000000000000000000000000000000000000000000000000000000460068017467224866000000029004338200000000005110260187944900026138427282008100000900004920078000000008073360000000000700000800096353124140517225444615071431301035539900002326020400112090067170006000155560008901500000334312000064339261318108114145020007002078201070140000000006007000621700000000000000
SP118Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium;periodonticum522514377139724872621465191687211201549671299417278835224606413724826507833931781242171065649024029770767526425752326118726130546226755325592699684468085853422391624192576718223586548116907716234862022642456386054418561070199925014415619206363830143382909069457367811410271117511822097027751235526053241000000000000000000000000000000000000000000000000000000000000000000000000002122677974211673368125568781426397324115963363597259542870211117536242347198796752139415153541681238561749110461341967139411027722157933932008601018071100242902354819314132454019871508012360252731692660387737812167299314041134716272752030371263142221511463751870014131441051540176852551153982662812057766551017652419601410654225432352234091682575116411311533889109222031525189944319514011433082194725616951445838733266293827201162065116010701668981588979860262247140920117871069197148037642177625751855307159368522296653963511056131831782863823426699737474287145531933938233116254403068223379054910184911676083645387001639437980674750114105894762188209702775143572370568117406245092619726524804150
SP119Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Anaeroglobus;geminatus0000000005000000000000000000000000000000000000000000000000029012332200000120000801120000000223000233234000000017281100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000045199740000016000701540900000035987900000019029000000410729743019540250001541710000800800031013800003900121201200530018608537000034204524237048230570001360076443318220802000000034350000000171800000125600000
SP12Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_49816108000053532052700720393110140221850180000154354003109000018028101028550190251658902553960040346265041184126001100000001335100256190012152932110023230002300017001800000000000000000000000000000000000000000000000000000000000000000000000000710010317111101239000391130000000022000360000000000000430008631700000112120008006880000159414016200000000000000000000009031000042000013066570943951322001610053932004108190019001000003147034370000000000001009000049964207740000000000013000028000015000110002300000000031000000000000
SP120Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium;mortiferum000000000000000000000000000000000000000000000000000000116577026710780000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP123Bacteria;Bacteroidetes;Flavobacteria;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sp._Oral_Taxon_A4800003390661023280000000052170000000140000000000000000000000400000002116174410202306431716400175629128143319612171000143612000800003116600000000000000000000000000000000000000000000000000000000000000000000000000050300005014515021432000270001000311000780001380000045190310000086022393341191780000000000000001661700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000038000612000800000010200640327165587
SP124Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._oral_taxon_06600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000514295328033611050127918623371059912178063338951230850102711280292103362257199951525157431171715329111029260527329671815116521006811965443157255216801883624541869392762746934714773219156124891732996137572739801279555547723383319770062085511126838329471136157124288772515389000000000000000000000000000000000
SP126Bacteria;Firmicutes;Clostridia;Clostridiales;Ruminococcaceae;Faecalibacterium;prausnitzii13038706448329341500111602017934519150050932632162721794866200330650550155565243322240264436038900001224887016236242553450000021800000001396771636000348016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000047000000000000000000000000014120000000000310043000019000337305600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP129Bacteria;Actinobacteria;Actinobacteria;Corynebacteriales;Corynebacteriaceae;Corynebacterium;durum3015123700020917015156151219101680701102600001298002113500014151710130001118974136903511001720301416090420043054109000018213422136016622905141022146200001700013000000000000000000000000000000000000000000000000000000000000000000000000000002650175168623383300003520129001452941595628015213810019557720000205002710014314900000000106113000011801871321056000300163128281900575304855644871576012500002654341462161608149931665535314315823335322446617710421342160109293736560103568207474068225706524562048124559065054037261160470760425139402243012526629646605421294619401518005600284638544925000023001450014630000170000043000681110300240
SP13Bacteria;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Granulicatella;adiacens933135129603221166195136295176764574430821071406477665067133465081939134371367321572785949933548555241165128981173072566814843602261592267711414899236164705361016123419133775701103783281525185922129040920862878415984013309523216007375139747919072241461230422226187207223151555327348272688103000177000000000000000000000000000000000000000000000000000000000000000000000001732143691812338103393472236711681183850164418772617136712785288149044247282190426122161212842832267114522115623983387788571430319572110161616297710462261136359839746593162526967789218806512235279481422441104126332575211981412787318174177626081544732615237121015621705311130812237331540131922472698510425693932931425166927911283911458317624507045842747429943921115125942501321117582220502932441658240338232448845120118081935129017022553108531372743428721271485177939046561835430815048080332522823372810155124083254437395627698207692265611686532373274385863922381076292337145568577614138402352717671397185520112119584134661076817172451200120931802174341520998634494753152172321461976436229188211226153562366356278223679385579111344155018818892813185081312
SP130Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Selenomonas;noxia1100000082000130321752916513332912340005200130800001100918171001226140821902118000171381149497124000360383120310016160014100019373154151962011516010000249413800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140000000000000000000000000000000000000063707435339008684558737419286997144521168794483983026425427021000046000315710374020402504503804520871552404901526002702437450431423155105345016034002200002206500005201044331021810847200000000190000045310070004615021215250100002690001200407335000
SP1301Bacteria;Actinobacteria;Actinobacteria;Micrococcales;Micrococcaceae;Kocuria;kristinae0000000000000000000000400000081192420119110004060013723170101500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP1306Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Cupriavidus;gilardii00000001984764029924970972731612513910415690355361000360303003400000000001940400000000000053500000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP131Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Lachnospiraceae_[G-8];sp._oral_taxon_5000400000025510000020400400000088525710501215205861514955332920004530056027122324763197111217044018031024649101041516606904326860007094027417300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004208000262600000000005654000000000000000060870250001213160000000000000000089418623020000000001500004700000000002900000000000000000002289000000000012700000000000703924001600084001400090140003261860004508600070990293202071117019450182096
SP1320Bacteria;Proteobacteria;Alphaproteobacteria;Rhodospirillales;Acetobacteraceae;Gluconacetobacter;diazotrophicus000000000000000000000000000000039843700600000005219540400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP133Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Catonella;morbi33000161519000000000000000001440000420000070000000000001541000000000035961648222380364130000320083268042128005711681132008302603701611615143120100000000000000000000000000000000000000000000000000000000000000000000000000006000002900355601920410003413929770001230431600001555915301326111214357411072000054000032011901044010000000000018312300001052120951080004254590170251954307420217044551384300148302911299781932680758459241261612175010297177018102532844450322010241023861349240332018001865326476696013303313321218715330603441326010232537930192477882695526757380000070000470390171266654614904004331000000
SP135Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Peptostreptococcus;stomatis1441523305210371043278382813347130305682248502820561370042251830125523258126695135312425284760602212442211830884355636411877099293925745679233714355926233757215414955246983897303185144972030396613952446181560000000000000000000000000000000000000000000000000000000000000210000000000004732104028175843113597759686259600398145321837638566827113943144041102341881341180110242211869372855019754400092150219217753190110058186010816143520021144301719326246316720920914130071451524458106011941191777958280766555321469734848304113911214741421323538935149742357347712555187143821664049004610951484155677170291590836162953421844919983870882203856614231481575133842939922476383651818436482266595122725189147028023364280194155643983912542611823757899622661207432410323045802232398414962456273243043262689534339143677162
SP139Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Haemophilus;parainfluenzae6015215383613067936217361623268725599661671129422698112516073585473246752002308618019997741522646190381156856121255584535132736737631543656198624503598162184916177959853817311328392499914866595714642559327011201609431211607041373193676512606552467461772227315443332246282250229845805174177501188657792048399896805639259418533908507950956808173415261399139371941266413971557145639593771791271387018086000000000000000000000000000000000000000000000000000000000000000000000000004542704058142469416010931454466413093180494162742151758024943116216064282151271528134213698780489284356372021774104421553133828563386012692395284022972419828127605320433542223449585585052623367191113521661851564671944462914522657561312661261268191933543995121443902200412046581279128710994480148140246943361189526412646426237197669876092560545546476339881300259132234416428950030752021455047529061880832554240938316626277071476468740239824436573030161729769753176458335766613100191202102436195601110788149697820288619621084850119241309499765445935880919973858688497694534115082148615368986440258595211887987437931906126051006810939108342558431012394515974505446767756655680301810977377985256547837394836534102971015942295072951400179737601601744150822063941192926781393158614803936385183828387511781781236414929463722553062304452751621730
SP14Bacteria;Actinobacteria;Coriobacteriia;Coriobacteriales;Coriobacteriaceae;Atopobium;rimae0000000000000000000002200000000000000009000000000000000022000190134490000000000270000000000817003700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002926000005103839792235000000049000005837090175215502202826912614835431215673411637243110318042843607762226440115999103201801140623581319685132147068115136163871130649835324763084292024272161727142311575867185791116201279121193414783189432170270000000000000000000000000000000
SP141Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Alloprevotella;tannerae15149901520080197013510875108452192249644825271704543107279516302279453146040849297194721751166511713045428622415211233051947017090324832441683762712537023002216276151805447186108769415712432216545910468624834952301663251043075200000000000000000000000000000000000000000000000000000000000000000000000000227143816146641320291239758144244911337801670331517127826803915001940062026447435098205500508491712800242404897856228010402761591300912541842027000221495411114534198055640225466813861104008401110257188865301627181771022374024333519843244147362562239550383137451514628298207833532211067852661314632211602532216404228067011601309369319032616163649346772018077173813613971594029214478660372332715136304801615078405221115224315721801601417218460165979110735248389724016752513080086281493323961280552718
SP142Bacteria;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;vaginalis0000000000000000000000000000040000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003800000320110000000007014600000000000000000031378000000083000000000000000002200030013110039100006280000530190002000009205053000601700000000000000000000000000000000000000000000000
SP143Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;nanceiensis673483457193720945456701006243677892726619230913263010020118204710373419110171184173491212711635564466165171242423022470351568373442494715362946320390197514199953171349157942756447503201024566678263412208959162694901479287729634610934361281651584392000000000000000000000000000000000000000000000000000000000000000000000000002524233625818178472106174939550375581065104172137100220504075564439660546747108281517031552114380741398383122633060372355375852392054099462169774990332417122121447100382449976431013110009212131892300784116801672241925106014039153830119998255114181697206034112726133970141279532735277117511731197429141022923672851386349131839152874881348193854963020999880253601870440801671151154207065379833372614232352515556131798380642739238939634337131802128256342578425722411715409100182930989960578138549357210046503186409940051349287092001026428261162734301719467929934910954381263654517431567201988151720995487980
SP144Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;sp._oral_taxon_231000000000000007000000000000000000000000000000000000150000000028310003001800015010400012120022000016000000270002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000780103000000000000000000010121000000130001935000400001560484101839165122860009006605296640308708118000043000332030632605926522300019005210066040023313502505894855255044300017000205048203026552100190100000017000000280000000000140002
SP145Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;sp._oral_taxon_2370401680001491913400400060000001700022122112814440014012144121320470033241116982406201110031232417990287910798145020363080280695628804100003303537370390000781002834000000000000000000000000000000000000000000000000000000000000000000000000007856054265670000010141004934041340309014720943140041065000184511659701001331790003712386867127270888227601138225701201240000000000000000021578000100001603553820057069844301097751630205342750760485700002601600441303194828159240000180180368900050076163346005714841235138109012738010300002416237634158322372602905518000380390410000801006400799402443368000185
SP147Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;constellatus9102000003526192211850000131600006000000070000610190081210390156000000380122294205990841008704110982300000710015131901417003419038160000600001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067000000000000233000000230019000340002800044000100019000000000000000121243293337580079800012138510411182792560953352494953510066083280901886023002503601210952510443200017145418330670015465302802447381025824514966824186190120710584531591620790002010000340038160000620012008701100982300277
SP148Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Porphyromonas;sp._oral_taxon_285190000107255800000000000000000060300147000069000003802700000000000030000002864996155911035000000052031524724200132107197660013409200010000712876000000000000000000000000000000000000000000000000000000000000000000000000000147000000031302400632640000062300298950015393000447038717436901026717800440001553060000024908520294000000000000000000000000000000000411000000037000000000000000000000000000000000000000000000000000000000087600000000002734700820000012050000079000100007002116000000000
SP15Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;sp._oral_taxon_17100000500000000000000000016000000000000000110000000000000501000001910000000000014026331400000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005100000000000000000000000000000000000000000000000008576600003839000000000000000014121029000481000001235356531830000130000000028000002200000310000000800000204000096001711501104900000000703200470000000000000000000000000000000000
SP151Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium;nucleatum_subsp._animalis489003000146391143006350006004055660143120001131602439012367208711984416832410466144216826959302582107904977013701671231440570000000303026523087095329903512214623717932132000036200748403568000000000000000000000000000000000000000000000000000000000000000000000000002280140000000146010007200602456009301510490117000026511106620004181150000021591361841926574155105000013828434500000970674645218470259106156003061251851580050054271042894431006843191168385383641662884421742812262693035201501176585541375988102179082018915255223293126574193150258621753260413320775397523242244014840333520472450238128841705403344380129474435174495519582794164572111748316863698913431301067280015619000000200927801261710510047640007072
SP153Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Alloprevotella;sp._oral_taxon_9141110004293292947048050750202004913316728145000630222000040134132059841843021531337066273503700200220501000270113529448859955250017522416194796322287510212019241427392041933613043349600484487071242141180102878520351000000000000000000000000000000000000000000000000000000000000000000000000005155141780551386514694655310532311202414001311220001390166124218739176150157627011438201650554315321177300006111299161370238133391230160797365001300000011800120006861489000000000000014019713251427035000444627314105310523311000140443650045722167500472546201147000002232600233270000000865848600842500014172449982334125543118000114001647001470908911211900140225801301180137700005471112481733500286824415555002311601845965640
SP156Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Lautropia;mirabilis175713173965440202017729512492361072515410311144239353346842449058230613343406266904461560439765223557107925619616914217913919019924361684253421493129652112751662234324234010102657183173111568331088103726574085592252191231005233292229255614303151101511232601795818741205161707160721116517104611420122911912192178021500000000003000015900000000000000000000000000000000000000000000000000000000025517132502712138315521141444290180135428471541301219231366340516908411221105242030127783951181173482835686104212112949661097917652121611712882644132218246283218122483131731155615391124712016510532122146243443847121183049961812138854004623207775654571124710797874678647915114101334396931531259163256858914062969654923316100422761671223127482539126012322042484757550125071579286592632848953580457417129111571975532912965279316692204871591487297011508354944327591461647191307310249515316123226331393473540294471986003171726729472790113143391711623683082319053983095584017698425310072370197457396123216520161771176518504711424126112138471092117724225655221861912311115
SP157Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium;nucleatum_subsp._vincentii2001768246026471365403906889028148042021815314502902072624872110137164837739825840594795252402681171474077463507252753217886237784526338912757850447690156899353489338312188391197144372180028017773712618110265930727818613069620363035534312962592501222700001038141794643570000000000000000000000000000000000000000000000000000000000000000000000000001064282070250099000016134601200022607994475016113384675891140037550000429266571820049154500001353703950019801852075148302571852070136171794876545729642123252293037687310219811700277718020038059587237927016918732346229651647269941409611303275357331528127184141422598180914624660182239529898285075728496526116340193018549232208498555084130232753306159284223120550347333879743812065623766189114487602671481641107712260172193186797011500003671314262272024300001069173692990318297393169592072179034417941321
SP158Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;buccalis6011530206405217452680725581945572580879006700038121110780270522447004417312412807661750385358624021311800292333738701235885926820506555001002380391416919802778077501001006500880560040062095082107000000000000000000000000000000000000000000000000000000000000000000000000000010927500010500002096692040000930015600116000000000024897076000261105000008824822301340391000063651762980012000063266000023025000000927269180007412720290300158234004981067504235068145500045140124004800180013023009212802704600008000000000431957602550103004200000000042026632410022080006600006000420650940158091241055000110870
SP159Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Haemophilus;sp._oral_taxon_03698557712213199138118932435872891434885942015070337977635810878783041641376022417547431255437878094115115120714731454216147979234383821311181893143948427914452915419344529963048568129411140029240031013503360813412851551981362351481601683531133613440301900281802715144144000000000000000000000000000000000000000000000000000000000000000000000000000040000000000066021002353005057911561572948602200001627006400000025580000133000184000082045666430001702989214500742174806102008826153058700000316559040008807000003800008100210000015000000000000000000003300000000000000000000000009400000036000027000135050130301436204130260024180291504115000017203103370
SP16Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;denticola135052379701402637011788211054644123288260601000121091704331586218914480155483767631276643420130415401041701454426038384820977686170330000000009415008001128358300249025002300320618735000000000000000000000000000000000000000000000000000000000000000000000000000000040460000000069100029012100429804000000084760179000050020000001170373410208085000104263142000000019456631151517981577002615713867630700508114142201541452714070581161310492292124399491590914621504725172702802597000119053121803447755220150520051100403062230954824502741183226176620501391186291143700061606823123651472222400033000000000023003300410003300720001374
SP161Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sanguinis92193951820038110304103314111301961061742941511411596621701781788012800326313627541402955741179189434701133211221895052585850811576728497859154196916753063282531901212435115469111925272263879501421409245424111238411100201282555319857317251411413722113030277236577221627539015328000000000011800000000000000000000000000000000000000000000000000000000000001835962472926801211280819901535413757192370456059513108732401163155013430112025515400002773840147450458675890446013080721327383328145142115588050307168295113342736494785237649419549214261184564414210261196636468558691071157261772081053021811511301151427331510435167727611664154726563802103712816186664751734312731393600140268463872556207265184349470411410217533511142017037877910525212674217469387724257906122926742682520525137458235421216609357110411628117046434923884002671253881214617333218017810756285479601118451261804863311317150142379210311028423659222516343120243547011391112552226351270
SP163Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Haemophilus;sputorum14025160114130000335355560615062176225128003925014713101014900006000176840720721629003972200051035226529254143550019501587189000018013901702991861620330196176135026415208328628263174887487134880286000000000000000000000000000000000000000000000000000000000000000000000000000965790009919919307422113558233301253163470000178357362741062601385000272600813203056137010440000026112901663952461001528003517511721319400019249000000000000032137400364272031821827932181323123364495315781323546917113911901861851516832031234052403233318701062105101500333371950256257430140170216185445902229112016137366105122453106842264001842659625102151533219940319800024059200252862084284262641748884871350055000158625186001530
SP164Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;multiformis31000000036245630001080140000045900114079039620270775236463826196115610731400110000001356140259500000000000430122100000000000412324000000002520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006200000040000200004400797300038001530000000000069000000000000000000000000001004800000000003224000001946036000222090000140000000140003000480251000275000000230000052125000041224142460462405114000130000030060043076290000012442000000000000000242000037
SP165Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium;nucleatum_subsp._polymorphum2063231435970051198462137283922414314813611502164201123221160634263900145273818533165703143777177382150944501961832074046982171302982091629182895146101963486974551715131945401029914046045419612411421891407018147516611646172250529460291712922722813046016014449363615000000000000000000000000000000000000000000000000000000000000000000000000000129185159800037900047904689513570127364243025393801741417815802051020000279122150124113096100000137122224941633621122204321331358760127114259273000209560505256136736465723905119638320845718248832921075763175510218870510496271031125474898052206601204322150669015001415410855051377561201432570104639616523924981560194617359229016108646600721508963901031721490354405214412401197433454162404614094253002429029762280193130174113583442498867702628170852723900450160133393540463620151335045519711518216
SP166Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_3173116450009403818060291702211219172820165000175334205061062262889120423723743535413340362444442582130154441991110331928233360240653700218140243000018160133245131143469912097007321453915000000000000000000000000000000000000000000000000000000000000000000000000000000006300000000138000004189000109000000000001100000000000009800191000000027560000291539101933000000014020944121072902500030170146100910136128255365022722133703622131793514853982165605810025259367711906344001387241595014311508140359180314450152192218561246110602462301063928422630361103641276403508200573415012516738228120300002541409435140108003911515603638008021370012025
SP167Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;parasanguinis_I000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129158000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010194966551890139043147409314330611237154108717302656122056119490000119313605011146247041634022310824212209301663516500954880530338001493684167850319673925149022900460777015124119853024633000000000000000000000000000000000
SP168Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;odontolyticus0000011924000043000000019000000000000000000016000000002600000000000000001000000320000000000000000000025700000000000000000000000000000000000000000000000000000000000000000000000000000000000002870000000000000000004000003300000000000010200019700000000000004400000000000000005077170000002653198000084963292551642934244080531020234602417115489860417113493346106041431127391160709105226671490460918133827739694591510325017881950301814395352756587116562013131650113159710437205981370165993037933948272231151962112228341968579103156223678192139841923112444499314691321169014732462324199310521354148311701612236131973710090000000000287000000000150000032000
SP17Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Micrococcaceae;Rothia;mucilaginosa1403213241459611113918699420324112924219829289630969235357812157130109881422193891052445209495552122751156511616810176216382081638023497761116983357774628132411222804901316008312965021978081491284073891126813752205378498427624236823228754342593122024245511680102210103043801542158108690852012213813531255593258572000000000000000000000000000000000000000000000000000000000000000000000000003831638872113811265614389111521471791281823051218261097816297713577987927763269695106025513256284914407242770848432347665226345629576791923212079269964206256034441317322359515225347301006209810733160248821881619112847106481897125511211820191109019994022786061400530551122271223071761150928263719290768125292102411451418966152455651195418224761674737601733085078277807618171050544609881764724404172625518558450865658268617952434108493748579875460326364572288863814737348238873831556371796996831216947084589475364705163324980863361947934786291328125009710977963656961745772903237110629721881152317489756177828119631057810123329018011180728452870241537934790147545551148438233904454482644046819701350747001714977557466310283083341673158110391952513414812711262604410796167528701041286165138322453853160
SP173Bacteria;SR1;SR1_[C-1];SR1_[O-1];SR1_[F-1];SR1_[G-1];sp._oral_taxon_34553500551321509040000000280011502039005400001000374122101609000140046000000050061781453353200400006000010043000486917502101440032000001235700000000000000000000000000000000000000000000000000000000000000000000000000160000000200379169700133007601615903220000000000217284963004300000009008600001460459261000233723000000024000000007250515000000038010650390140018357139212915600732323336318507927600270114167017001503400240870003230410190000107800000079879033935857510101244040002223018201211530191476009490050001460042000005503533040000000
SP174Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Escherichia;coli1261441667443095934911114695082522110116851281174028633114241465806885090224012000202318143420040240269286389643214022560000063000000016124608801855200600600000000009000000000000000000000000000480000000000000000000000000000000000000001090000000000000000000000000000000000300001770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP175Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_2211110072750250000001211706063013002311367029192338190126191013690077452613044354417622000130004394843237472800340000055017282913100249300267136981784002916000121771835940104330000000000000000000000000000000000000000000000000000000000000000000000000032384220410376993437125033917019050621037176196441046223261101283201200003940571436317411462258001155468362720417206950003395218005619735940914800390009412517228050641700471670562603190120213354555201301047904120266010641085266113337741644648194104514440200415186604315331011313248145900189000072441612492046448487162970019051451647001119027285059022115685913643000000191202000633803464680001600400016000121801835940002900000000280
SP176Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Peptostreptococcaceae_[XI][G-7];[Eubacterium]_yurii_subsp._yurii_&_margaretiae0000000000000205007055000190001200060315000000000071461124001000140110017000300192503022021000000000001910001500000001802700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000004036013000171671430000000001003035251201413686603534136308144592301623702001020014299250027000312000618029010002100000564121580065160785007000161900000507303900000000019110017000000000000002202503080
SP18Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Micrococcaceae;Rothia;dentocariosa94143401193141361041016816771662342302860219187188821686262723380062173412517651376243086082414238151141830213320781254646573979691744941072965333291512206002193000720121650114171822103325555606840275835016383801945635117200000000000000000000000000000000000000000000000000000000000000000000000000013700510006352290159000002770003000940176000000150000000000270157201491830000003081941070572044902891425084249820002836051095811340145681244171466283114611818622152725967421963001184810174662691080133725426610437336719801445280129367117045758358078564101991982929421570537234354404268039417130210410416109750333180153268372063311512418111773212097382671092482252631498415222133601008786109318218811271732401061091480155685592491853343835272057200975200694005936003939019656752300522200219032001390
SP182Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;lingnae_[NVP]4800111012000000270230000000000025028000000000000011000000192440000130000000000000056220000000000000000000221701160099000000000000000000000000000000000000000000000000000000000000000000000000000000000000027300000000000000000000000000000000000004230000000000000037200000000065760000611060440000014715800002633573107551342487251935061342875270153953869029842340925508954828423644296351978183386933532562359233533026262230033928911659844809504742593741116120687160992861660545834279014450744157520412611511942163054188627041812512020223546721718126838714900000037400002801270010200001740000590440000
SP183Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._oral_taxon_058000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000088727598391105132012693957570146106175423239276164890201285716960135221263109671900613601230247823075913719444023751167501417474421290226310100479412413527625654822245266608138066033303303094310265508132939180520000000000000000000000000000000000
SP184Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;dentisani00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002780000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013777239318352167001101074189362434851911911852558131155512681518244710094310656283350390615190610419500663700450972611724019116784007315857107872280457121461480273402450955536034389285351331768313702161621485543331303124455000000000000000000000000000000000
SP185Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;tigurinus00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001911819100020000005883000250158001429059000011500210095003205300350002000000000721970001312275081678409437000000210230054000000000000000000000000000000000000
SP186Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._oral_taxon_06100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722012354114281205306300001317212101561140731002314603400294357515982402420000880024588580163802770220000191251000860000057221241000000250260022171510000000000000000000000000000000000000
SP187Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._oral_taxon_42300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009510000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000296706211289557144921667131653109592214349749696269784936637650470376195664450292110748327575414212750127010367163094131551267273312088902872496575078154401995210902704543796115942595360816101996936019297371051230708844901949220738143379342612175000000000000000000000000000000000
SP188Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._oral_taxon_070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000038000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000006135048286143108423180000423570020095000000000000001801210000225000026100110140120000000080000690013101581430000000000000000000000000000000000
SP189Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;oralis00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005400000000000610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004302861178612330024166135029310811651280149556601044161948577071268027275013043019339122600045297164307744504430034531112513011900111261324184242003057703100690100173621429821270314000000000000000000000000000000000
SP19Bacteria;Firmicutes;Bacilli;Bacillales;Gemellaceae;Gemella;haemolysans11823587669672432331262449960417442316393325658355222887946971433112259637851913920323820645582541143811798288181909160541313105497841632736920921309797826604054730145432912812038143886144249154012021326815249558241443533383106416206446071346755665177411923953242022571804253482691498313076351793162412056172427331239561257199733491997427563000000000000000078000000000000000000000000000000000000000000000000000000007115931351668917601483251183018569562742898505464164530317642738543655214207929013611026016098100630102461965346358313419362375421461526775321797269311227428727320540411229787369819179319638613161173981562924025062651560290655048141346142972009138867922240394474721256675225328135422413918999140013514014899497985303671914305232218716622006663126680077068362931168675479391266274438685284429455080670031916761239931329271815371573437575286329917515890346472111883161015318195020104162121282756193916918539844446312990187018341231345100584179412132411496371581318001638216182487541289621267391003359201545201138610671647772907348763674143711
SP190Bacteria;Actinobacteria;Coriobacteriia;Coriobacteriales;Coriobacteriaceae;Atopobium;parvulum5500169223682000007144700153516400013601000570135322711351693114141126402388181007168070236371052455726116474816000200172118133473290522814435200873241085332120311712375800000000000000000000000000000000000000000000000000000000000000000000000000076502985712669754703808248409383031205694314480872726603116109559455179510010891374205136237761020422145294137054104283980614422206670443188688301205810300000545525310917864282429101207303141509017300002263561527971252611758288651545368683265711159803652476450147730021580286181486357235465943253750557191846307350216471863202198857045433348269453411899014721850396540313282918682774218019414616844375431712346223581661216261252616189789093336430875868148901342377183327725042474492813472260106721025000240003544089342122321812647928065117000000
SP191Bacteria;Firmicutes;Clostridia;Clostridiales;Ruminococcaceae;Ruminococcaceae_[G-1];sp._oral_taxon_0758000178701020006643030029180240005001906450107563230005549146088435272325161037049056626177441240370313530009211291145100314030523924011941190119600127024103670000000000000000000000000000000000000000000000000000000000000000000000000086134275300401171423948023473413799131327655058499031159618904045126338002625183291293461657484881531110174800367732389317422012987270658723520801182917101280000532500016011298322105854412323190103683101211601851453164221985333214740627291229107938955035701144106401050700013203565196610483173570340015044310370103514466261641534939751819345360110221223813916108203000871896025004219011101001284244605812600311736303211
SP192Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;vincentii8000004000000000000012002800000000000001060100007000000083000015016005761490001070000000019036024000111418000000900000013700000000000000000000000000000000000000000000000000000000000000000000000000920620000001600264025800022500000000076000031604222610129002900470006999001075904810647515393000000000000007000000000000000009000000000000120000000000000000000000000000000000001130000000000180000160250000000160015003000000000000000090000000000000000000
SP194Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;wadei22000000340180500701425100000001250000371371302930592001203536277002832538643443808590189491102241010803648351000000180000027000160000363367010723270043000000190000000000000000000000000000000000000000000000000000000000000000000000000000000002560000000000000204000000000000000000000000000000000000000420980100004804496110853130000000067217200703111800132155000432692225570181478281016271177219310025143195059077112302061159007964820304551312083115345501040440021258013001323013841057346866190123384263025630723723301204509500627716522000000006900025004300000290000000130000
SP195Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_417612003321535022458548350203569731185665730313912601423401790134192833915000032295841291125802764112323791287172011264529118111880569681983110716942110120840109000137074158754882111471456912031290100217440080219711412381719110900000000000000000000000000000000000000000000000000000000000000000000000000199441619958370891811939611030023103606411122600243970400049000012680367180131128142400067680818749000348120015301481510317621890103357291118000321187156522500306822052354486000572907340775132220284219680743669039835483471667327613369976849652733457122360977377582704209703670138950001271162000130247176511679911390112014217204104939002060127843187956783546090606149363207590850456346587782458401112366136001517021000450066211071141264180000009352000500
SP197Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Comamonadaceae;Ottowia;sp._oral_taxon_8940010500048586076929013214420401915123000120000000102110100120910007670128137414251523114320310111020730216348401417814422971184371193465366908204005001800777300000000000000000000000000000000000000000000000000000000000000000000000000012651414090000120145859400395137390019337002761781044500280228120003204650000103021820001090148421370017830070000011000000000000000130800709164122323140180331122231632451881202992421052268013115115225484538221249189423723172300207044302131513553103061515902211034136235202001927116226691211410740261942012096023515622130290144500084023040050019009612102002106758506
SP198Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Stomatobaculum;sp._oral_taxon_097140032216320000000601600500305570000000700110370000022010058131500711000000592349983011826010946002011183362004337272260050000160005109433400000000000000000000000000000000000000000000000000000000000000000000000000144003483572003300038011603925210350151158580500102001060030810100331146922847542300000185770008333131040295001691410000137856490009664061340013247673001215796421713810233734589239133516417443232168191232321484216186021263224692719401066935351101148076960191150800043724600326202472557282001311635823302326601857535124790119932121926368000130002745499643228786865744364600003477000000190005401226151086092600101000
SP199Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Peptostreptococcaceae_[XI][G-5];sp._oral_taxon_493210402124112003000000000110000040005000110004700070000030000000005023924631343906001100023017361760143027420501165600610372722060214085877000000000000000000000000000000000000000000000000000000000000000000000000000000000000092000000028000000000080000000000041000000000000001580000000000000000001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002300051200000392923060224081404490012000000
SP20Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sputigena69141007513871332208157212228332667281952437173091620190550001011201400015231002313001100000001500568913711613545741427025717915041289313222473211134849549350859812152358196362434211005759291022894121000000000000000000000000000000000000000000000000000000000000000000000000001433181191691962702731341505484301947703771128124627938546454069102336026512367726780622154262707671101745405514257405286095554180833720031849661763246848051042178000017110033222900160680026280201700042823128163630157416804666191563118199210540723723142490417157854310243745212034131628731229307227683158937561185318651413871616118254187124149464358496311753161286115736190340538135229535180511631066249231657104698082214947112298683139135392914373523211969161431301115538296786252159566195133924753586852858953624362110268613010326333881374674552760179151213117419
SP200Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Bacteroidales_[F-2];Bacteroidales_[G-2];sp._oral_taxon_274132211020061338200100222511203115192910302440042801313122410436332312223263416109111221137522814256949156327601932552348183114068003612193695311671103417565264036276004902421089560000000000000000000000000000000000000000000000000000000000000000000000000075411401481645116270881175126067726736212371201721772242491044664110346340639210618374650452510595133531711944700621433472281432306015815002271531825006876121900408469801510402401361954031000802501500376679836141092121862930115139104383153888623018266491341436404208561878811706340870898107218169841527004810310330106614181491911511962511563392200693344524216534600570200380664418413452730361242200064002760049024220263234819150156900626
SP202Bacteria;Firmicutes;Bacilli;Lactobacillales;Aerococcaceae;Abiotrophia;defectiva2314827351416127206345665316856772954441145455291421093021262038291913002111634819193228203012875041739111232064049961585305835267563226010003439532750162511381736118208125017002045000887136700000000000000000000000000000000000000000000000000000000000000000000000000092095001601199004012455175151003321086012206610038370390890000180922901305600560010617812200639662037436779095001091474282344457599620034312560600031215111200046631116541029093000147196511403241711910204356062143513253097011606821020002601615363141017251003021000257901481795137307682180002770303920301240208915271823110163423090670151600001515260323324000329100020839301700205500077222754047358864236270103660
SP203Bacteria;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;aeruginosa0000001200000000000016069000000000000000000000000000000000000000000000000000000000800003400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033166504003230525878260326452934109942241819631160295782661160223802306016909235312195111774138631742790388422322151368671503381874385743138180000000000440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP205Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Veillonella;atypica71010109921443134123116202326211819901300822557610776597034430482978406171319820512808230723528254951141058751812441674330203411901330252121238110112422001276090000112047793322621611456043100743223355132496200037012858425814475616230221400000000000000000000000000000000000000000000000000000000000000000000000000000360087260000000002600056000000520000280000000600103793400000002700100006226516619100000202121201764471708975794160124599476335921133138672202075149178243302407571764515153257158433135758141012402011691920105625813791644132259294201382959282421158001748910139716015830421363132092145108201848825908919601835569552152922388235502972291037391435992216023614617061406494648992155334801130289440082757130602003721475912581297331612325230033900000350
SP206Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;socranskii001063420032000020000010120000009040003600000003006190011875610893261280438754200136003900017024008600070921035000000000092400000000000000000000000000000000000000000000000000000000000000000000000000006401043119290371830107824467012400010002021181000010206102071835949074076000004262424556010611979474800093941000001001695140000905077711261020026400036202227062541816301292759068382374391512148892229201736046201722390018115361620658501845170025700880237203600046484341829676011442035180001230231216206193519017090002100000000000038000140094200029
SP207Bacteria;Saccharibacteria_(TM7);TM7_[C-1];TM7_[O-1];TM7_[F-1];TM7_[G-3];sp._oral_taxon_35112000846300000002000504051607160098500000800000050901405260000000030079711411700011040816065276102303220070150590021253419663444306658271189500000000000000000000000000000000000000000000000000000000000000000000000004000000000000000024000000000000000000000000000000000000000000017353249000806828606700516309910819378991921501713001130231100166712818216713767033740430539268322849691967929015270850242172319812551421223401225762258214063901166525228818150558158172737569147613121000115165972671168116333325613013221742152230376620261191566385425230000025351967364532676828440190011255298160039
SP208Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;peroris000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303065000000162280001780000006600238430000009000004601323340003200000000000000000000006508605800000000000330011490000000000000000000000000000000000
SP21Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sp._oral_taxon_9010000000000000000000000000440000000000000000000000000000000000004900210000000000000000000000000000000000017000000000000000000000000000000000000000000000000000000000000000000000000000322000000000000510000000019000000000000000000000000001345580000000022600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022000000000
SP211Bacteria;Proteobacteria;Epsilonproteobacteria;Campylobacterales;Campylobacteraceae;Campylobacter;sp._oral_taxon_04441000003911624249030400000557500000000109000164716220132158124104629145510021344860057163400000000000017000000146201360025400180000009416000000000000000000000000000000000000000000000000000000000000000000000000000550000000440000107001320000430018960554000205353360000590000075000450018300001350000000000000000000000000000000001401300004881001404317290000000001250018002321000040007018000005100420000320000000450120000002115600087500588108240000015000000000180000000000000000000
SP212Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;sp._oral_taxon_1801348375115510516581600002230025108533470624323274228391510078000670621560951944441010292324067260873779131622576870338403159139639533703536740820144089330830534839017128138677102012701072272100531751520116606200000000000000000000000000000000000000000000000000000000000000000000000000054310954022287831606383010062940460034359613379291617193935887948718309024610115145180002216184674687030413301561013874187100128902137456794419527601313717198117371073700944963002042241078100330921990179017414125870189282000046780991047138734973239912301858977012212967141013651705114535135948622585342803040704325648114966506034419718000329710517108782066333310152031336204024335619559501002007662452812117619203756425016917396015102304581803277353312812994681148302301934771302010095607496562791550970980100497037143155211560790
SP214Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;sp._oral_taxon_238050000000000000000000110000000002802400160128000390011367000016000016601076621346000003000000270000000000000026000000000475725000000000000000000000000000000000000000000000000000000000000000000000000000035000000006000000000000000121000111000038400102000000000000009502964500000133700000000000000000011100000000001400000000000150006300180000000000000000000000006000000000000000000019000000000000000000002804300000000000000029490000320390000190
SP216Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sp._oral_taxon_8630000141001516100060000000000000000000000060907040000080000010000828462450360180090000011510025250000209220080600091400000000000000000000000000000000000000000000000000000000000000000000000000800227800184000666120938600000362675200000000900231429811180230000000037517326630441953500753000317000000030000005150000000000000010200003847482424000000000000054004100000000021220000055013901600000151463000000005000000041000000000002500003210020022008060001500360000100000
SP220Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Lachnospiraceae_[G-3];sp._oral_taxon_10015040227358417200000757457061300026000077021190142171801491451815200140290723090150005335440390180014007002570001701503926370130001101000002020000000000000000000000000000000000000000000000000000000000000000000000000003100070000000004300052010800150084007300152000000127340000000350000053007738090023060111540030094240001316018460001000000512107766255001634292028457033924571012020804015562503001214021515110011001333281922701116053000057252600021582193268935175360011000016015361700161261970000221900000012011000014016380000150000
SP222Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Porphyromonas;sp._oral_taxon_275000000000650008001100000000000740000000001700180000000000000000000544628135120000000043004820021400039480094026702200055000029190000000000000000000000000000000000000000000000000000000000000000000000000003400230105000078474000036050000000000000005800900900006200001510050064000000000000000880022250000000000000190326154124100858063342017686219381307065340216938017126128624029527772082127758730170240407473301978192466058521988510661622903127689113628014901741161682156105157015483984253435930204972327923633014084523667594334300111111120930002200055000011038121000000000
SP227Bacteria;Saccharibacteria_(TM7);TM7_[C-1];TM7_[O-1];TM7_[F-1];TM7_[G-1];sp._oral_taxon_348000000000027370000500002800000004200000000000000000000520000312160190188053011053004700270000800000038026012000000240001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006500000720001364070330007012727024000802900350005424216639061434355156494961032902001195761073538464208272041432441411064132123834340331224967345801404022502680140210064801321946010152752401260210532454613356502900180271138162757192800000027000000002400000000000490000
SP229Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;gordonii000000076169763000115000490810003272000032675300000000720005622746900425909905524706503718604700023500003452100053013000013829545090000164700000041000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000093000000016100000000000000000187000840454527093366754622339399165011679307206414006200151820212092339401800331501023211173639064124112004032171240240137237800410220310142099480351700910550002415000395221017819128542012514001572902422333001601666512331333347200253800002015200025500000079930023500003641642100
SP23Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Porphyromonas;endodontalis3001653435402173178196167745403649577224874801605519949689313232018913696573587751224231325716141611052371989827351862616701435308441028315421720692354415227616634857595219391514517276301676626806813930106344226243615914411361699253698269821810490551332641770000000000000000000000000000000000000000000000000000000000000000000000000016710016278287628163392002073293343815201351115714413721882191711905021010546800344141706571376643126290372240136196315841025939134410413340222041100106000160009701843144801008120614765600000016000194311501330047885085145495011235197442674579229323470124166168140456136814604510325442959500570705711114124292111607031059401162654608632723822850293933112074613207836853221594600413293156255005492870001097302944362486165623944376625011386130012627070611527983191149256134249179922664471721548280172882041
SP233Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;leadbetteri3200040933127109428512848616323477334829363810126670025490340202104345525782714616701428002040000001782484275227212200228142066751712957484272438412594321337156514911541851931771711901099519831618156610823731871082490000000000000000000000000000000000000000000000000000000000000000000000000062416381532243351737473426441916384514622771727117132324804818561201127127671315801071212264121233194159612132701339444236488111677729703710922813911268107567657026882642032356144503210385011705416670106145220143612016129450110112171515311000000331535105561323146711726112711765521311296609322162928217914141278991350455963147109010104583971726741434141743707431022502231644371088186480532931306342440659052121149214344436583593927481230067811081292072992318133512257208772777363213743729506461071048083281379852558963411812824525432321311571899127196915181566109237419012457420123214675261911157593280590
SP234Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;sp._str._XB1A34240930000008130000000000000187002613000701100241062057000000963233165246365350604600000048200000000630000298017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000336000130000000000300000000001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP236Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;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
SP237Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;sicca00000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003681490682198226059187000370138002090000000000003851298065000000000000000000000015982000000610000063560001577485000000000000000000000000000000000
SP238Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;flava000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752727900690233947297014014344816217395867070662571151150007200425202048700000099932200560287000099000319000003771465464604434585392484207300014800000000000000000000000000000000000000000
SP239Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;oralis00600000002000140030030202000012010402700301200001030110420115002000140010000000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000190000000000000000000000018000000000000000000000700000000015490006000277221600500541322000813154207193401113806127201000001002911004520187216916141832045152800070296024061114251617011226618000044000131003008114680300000000000010000000000000000000
SP24Bacteria;Firmicutes;Clostridia;Clostridiales;Peptoniphilaceae;Parvimonas;micra23019000049485910880151020130332691882171218000002716200062627331415242322421157357012160001516704917113603214037452517479660352010410141260345120051505020036558431062503200206034280000000000000000000000000000000000000000000000000000000000000000000000000000018005100000000029000001610001700000005000000005300003900143129009710302020890264175171014105620610232381482310600372114244277051004800052251592142971151723311034361391556707402604662812102852115501901518124838953424638177073231671202305648354880841332388219964925148172291822714350926037724446992589215720133315300184525013857883564556785287235241609233842498531423697255231143783400037418551072603200214036990038471849098303653726
SP248Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Aggregatibacter;paraphrophilus0000000002250200000000002500050013000000000000230003600000000150000000000240101228000000000150000000000000000000000440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007105000000000000000000000000000000000000000000000000951100000000000000360000000024000000195000000000058000000000000000000000000000000000000003000000000000000298406000000000000000000000000000250230000001090
SP249Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_314660010134321713404000014003178130261108000041138540020361718703044104311349507027453049902501949054542803054813014490000200030008910001202021125431090117067012322117551410715528000000000000000000000000000000000000000000000000000000000000000000000000000032000442183161830046003140524000239650213334000000013366531301974170151102200185003843077800239050400001513701700000000000171500013291150001400000023102100014137401196052259531050062000000000670000108007110000000000779000287000001840164212140000001018600570130001599000000000437140461697800090004101122305564109801300034711900055
SP251Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;shahii14800175123161868000000061018482614400460551010016001803031014011154814228000000000000001308643951692777093814000354034112813226945910601989332773600441819082143609166221782700000000000000000000000000000000000000000000000000000000000000000000000000111952722584210923522573448276921218712646210023285418459009140045739254435721986234237573462260042313213561110627214990636562750420268117763074264457824000000000000000531380000000000000820103031325951390001174503504503864330073000012947901820029100160604140380000143504790800000033002760083800003563982014306400340000771059235840804710360003847169520001921011915440966824170288009140000430
SP252Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Klebsiella;sp._Oral_Taxon_A36000000000701300000000000400000401102800610178000502180300000000000013157040000290000000016116718015900200128520681083386006000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000770000330002300000000000000000000000000000000000000000007000190000000000000000000000000000000000000000000000000000
SP253Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;australis000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000056000000000083000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000086191361140745734051876220330712027710337211262941341175270013857147879742117319888214054020213853000104500052301943859110107620600264016722029712260242116108151811337264673152220020312789390119128240398591513451239297000000000000000000000000000000000
SP256Plantae;Angiosperms;Magnoliids;Laurales;Calycanthaceae;Calycanthus;floridus_Oral_Taxon_D0749606000213143537300004730000190800030001000000000003020000046000411000000130020050000500000000000000001813252358543313160381100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000001623000004800000000000121124000000000000000000000220000000000000000052000000000000000000026900000063400046000000040000000200000000180252358663313160401100200500005000
SP263Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Alloprevotella;sp._oral_taxon_30836830791182213423401350001311800729140110011199001119434204325663716389259115123412533315310535888725810650157201422149230203891162300011301127341441110450013853800482176453452317904748013517182542875914320000000000000000000000000000000000000000000000000000000000000000000000000000100232606485025866146375520030281302270894186576001050575004500512342932095689639533402294208521300099008368612200182358729040000000299400005515560142811553170368389007419187175319766513977028901643833362938476787553356403129890713813011881306366527664432195566891803249230554499438158161214544516403060304022991208773655851268662109247227321143373072051720322699154581781271358633821823293523210909653330211441423933281004164401032821606204411210322002902418005048013617182553017114015923001130401127842230
SP265Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;oulorum1300000000500010170000100011010700014331143602332481816146393069272233254380150112421001434057211930766966200014000000020014034223100280000270159009008100522300000000000000000000000000000000000000000000000000000000000000000000000000480160000109000000015204500021001700000000000470180000000000000122001530570000048584900000433010952106782045031180071184414003800101048421118025276569152171943134552431701725551000002902232674933030207248038151027433091186119290257582468214753220473677093491222291094701660381401901422000180000002214001000610000000002800080
SP266Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Oribacterium;asaccharolyticum001100300000000000000000000000000000080000000007003660000000000047000000001900000000000003415300000270000228330000000000000000000000000000000000000000000000000000000000000000000000000000000000300104108073000005266152000176000000000000000445000018970370000000162068000000055043000010473168334200971320101850153936559380001143483781493093324113879253102622074632491134163262510457320514736631154764101511157314202066910077066001063720019701136829861049014115102221050573218510510041262311802019327503261743001586207141168693102137860000000000000000023334000000000019000
SP267Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_306000039962044770001100131173060455700000009210365507700202217003200810076533214595518181354090000025004300000000028333100774601310492643400034001335474751210470000000000000000000000000000000000000000000000000000000000000000000000000000059909518785541862445400000361210005820380270046400611410268001425108001394292550548100837860004471900187000000000000507900000720820008110710130800000007225515124016160159166619934521354115871311204940003005591231400361409670141229390044043700103012271151310000169184290015001493385214315923399317111335580421311202127165220037000010700530000013715410771422600005300000003450
SP27Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;salivae24917229019913972220001200811101103617215966045117021433447960462191410951335361221184237543241446270602140140397491444015329721701061991500480300006103951111102877137081425487912117185452804461528884204932041152000000000000000000000000000000000000000000000000000000000000000000000000006494785675831216621096619155826005956024711441123096783074655204472738453900448828503781444788045104912335771031357759202639100662445080047666408491029434900005935137230617440191913681069480141091181111660169826111717382212586536761031094041988242498479452578293586284016142881361141195171186310520144184581062151951947612897720314422151066284667821063236050020620145249637984600529445643714641530340562960017721093132842522232216607451971186622240230251684188108122310207711176404403500221704628044715811585211932013173150004740000500
SP272Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;sp._Oral_Taxon_D259766162003000347550016007000000200114211251534156149062568722472543631136830128201960000193948910617317730408802400010000000005554504960001430290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000017000000132300000000000000000000000340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP273Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;oralis90134299764109384441235790731714221701166364517020429240336172456031463728917746737870401042177137022830425377911448539111194202711426584040227151529814810301802605611430038601161238551098547665382559685369002967424734119803310365812244720000000000000000000000000000000000000000000000000000000000000000000000000005237125970576000004624325578110591550196610000504000485301193203005813418236502105900453880011302702681035224006691321070082300012057104532000531237113319832070501754145510113609734001036407125015706662055327112355599129945423517011511037063251853753018429863316261017211100246003109318124294106002150039227000520382344201210020313525620411673743317266170351730542602292039600371283760063500000055249323098033103649016001299702605767110700910
SP277Bacteria;Gracilibacteria_(GN02);GN02_[C-2];GN02_[O-2];GN02_[F-2];GN02_[G-2];sp._oral_taxon_873000000003565400020000130370000004000000000000100000000000000000001447276038180159001900001911219830037100070008310660500005451527200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000361711001309948065017026171310025143850350018006012068306608434220000021400000608000033114141501100460040100403001480000241600000010660500005580038190000190002
SP281Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;sp._oral_taxon_020000050416929880133018020218305800080032170002051503829331961044052461311205442601860013186278440001120013300002290350030120151617284015200000021612039118000000000000000000000000000000000000000000000000000000000000000000000000000000000154000000008800570078107000000000000000090000024600014390260000001000000000000000000000000000000000001102424800076581770054827010136000270560011001391105502502667007200220027001990053602730241825037005586591992106780018160152230000023373018800000017828800000000016110000000001310000
SP282Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_526220120005000002500000304450860000008028000104000201111195439270090000701703101461581047029000607304902490176990301802900110000121513000000000000000000000000000000000000000000000000000000000000000000000000000016000000000000000000033000000000001400000000000000021000049066037000000000000000000000000000000003022180052236230410458384111313353141010438720006290060011151108123000470000120383100000189027170010110230411913556130297500093001671106139007033500003000300012000012650110709075006017
SP283Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Aggregatibacter;aphrophilus000000014572900000160000070000030130800038000338249540000100000027004911031131100750000000430486000049200014100004902000013536760000000000000000000000000000000000000000000000000000000000000000000000000000000002630000000000000000000000000004000000000000000000000000000000000000000003400000015340432100000000000000012905100940000000550000000000440000056000175000057000000000180000012508020011000000020285017000168000000001300000005022000000120000000010
SP284Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroidaceae_[G-1];sp._oral_taxon_272000000000000000000000000120000000050011300070006530441040641495741701513160000000500000300000000200160000000000229000000000000000000000000000000000000000000000000000000000000000000000000000000270000000274008003000000000800000001308000000000000000019000250000000000000000000000009000000000082370764136281194242011204934310090101870000100101001184103936520046000000112100346251621311003135127383572072701352700051051401931190004000000000000000016000000000000
SP286Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;nigrescens1091586270060410327859251273143097224081830016101243873914290340019223310086136114771242961221179343708724143447306881155653114117251414469357140112411331173060444524222123616518010238183865076140941439114120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000029302901105433009900000000000244000635300000007200004009300016315400000122254928040206318201215863238510629315210235102813941992561974333516734323301241321954823217611235744723313525195142512334217569169632365132440166611543616991439203432521535532161315692472956538973710530411916279362132026728823127115038015725581117366374469941125461201830018388018790507814094143957026141404622181500233
SP288Bacteria;Firmicutes;Clostridia;Clostridiales;Ruminococcaceae;unclassified_Ruminococcaceae;sp._str._D162659793400000590015000000000040000000000002900000000000572196381124174324115020400371500000052000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP289Bacteria;Firmicutes;Bacilli;Bacillales;Gemellaceae;Gemella;morbillorum0040000106413014648470113143173029271612311116143900381501073501930186292939159591450391064012404139555233077222206237935171182275045423543411008089766110369033345520443906725015730418012126171255483049513557139309012000000000000000000000000000000000000000000000000000000000000000000000000164510053540279227488413723526724836314711336819823680223025109700000455002578204503559149213481283018503667512711941634056817923411810543334417117000677538361921050092153027440394102195000324202638626120055588034093941482341205403045853857444646453956113751155137459513644481691319049614233743613928612000106472764172614211606261657110308911737901850450757415110407737724144750113542338400731038622581050106041443620930737817431003661110100571501900261712554830505135565102420458253511556080928344349
SP29Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Selenomonas;sputigena10000030348000015001370033189350000700001707616100098002612061155100003002010250330476575002901853000622450140016146112724371001171393500967065401186630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014187136362000001505319426421316401301324004633214154080190005830000521297314076073165910601739330000000507511603662011805632056630021180020000477185600015069011344138206350708000211022191630211200630210001100179360010700864111380000018186000061
SP290Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Alloprevotella;sp._oral_taxon_4732011822521812872255236993987958183070660164470221529725717272804600185059039986120915572276460278157767371132864370074352235159629013751078512912003971533918603460274018815002342662698351414476195834321431352903962056252906778312020007829839000000000000000000000000000000000000000000000000000000000000000000000000000183243143042052019979799930801704771054700005783125781510815003300307650018808122503201309601523781893232400256175380932189022300017018000000000004032838700074520000593572341028373749405001391011771433886112003503611343000401090000018060287000014034000000820021005000200047439272894010123395170224089034192005646300282500006729030400399068534068883125200044222693870028686018715106234
SP296Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Dialister;pneumosintes1671317000611425078558710700280090000123312185140301301656811131916196967421089443131823619220201049157140000600105030181134491108170082926014550120004449097865000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004480000072170732610400003100038530210002901510000563420000196081000182210000003316410900116300910208912216016814000001344298700111618018033033000011010290008208021872805626039001803133000900003200730222491104790063053242230562232130001912010732371255040001801600001500130004449093100000029105030183
SP297Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Alloprevotella;rava109134014971500000917231000220384004690031380170432919615585361041175020537612763065101502528012659570916827800070640001628120007240022116948062494909342983305890115210000000000000000000000000000000000000000000000000000000000000000000000000056029530500038850035000660810345722000017738312611703264721711951263047002550467260097330001700008008400833220000078150102600101900000157000007000172618119724005700778429231191724471610017801510000280085110204171918095301800252910635400001910691002402183017513633058914101133729013011701427429218195019916360280250070952010053374600901700920007644000489
SP30Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Porphyromonas;gingivalis419185104884112121531452702926027185173677337971406427621971950326235242922692322256454904567182421914601752621653571639170782018112111092921580112086734393794202219592770197200344200820020235185285221511693531047982678109092612229043415010312024315032917612500000000000000000000000000000000000000000000000000000000000000000000000000995518890116417532241136165903810916241395051813161318481148948772935122935407291032338331420334637172711061497477218000000056427563216580006024974171062000000032381300000000000000772808117800002345168117171529142944772343324853928067712314616119090191156220941327413737108064372484577752012111774115405420206326202326416945621462835551431052990558037416938091202920811330647135366106332652083267369033372060417000093002915841601081202436513344683078019620120412859600205174294
SP302Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Peptostreptococcaceae_[XI][G-9];[Eubacterium]_brachy845002012031500000003805000000041500850046000268092711000034010032118116070614558304830219460013862067181619563441220200905243512000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000470000060000000000000000000000000004340000085794700070407075315420250272434621417123432900215101431908060880272911532001332689380647774132271069241645821201618148104919254398202641332159449025011458752613111710144798441152419610492691164662100422111019128260220640643238528758689590238007351014202209052465122406146930048902128156
SP303Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_2180000000000000231160080000000000053000000000008221000000373170000002306600447486100000000160000000000017018200261600800003840420000000000000000000000000000000000000000000000000000000000000000000000000001361717531120104747538300000000028460000350000000216974149134180189149002941372185600000000430000147002520016000000021400000000000000020000000224000011000981506490269588250068000002810000000000000000163590005100000001580000000429260000012900200000089000160000000001600900003860006200000000190
SP306Bacteria;Fusobacteria;Fusobacteriia;Fusobacteria_[O];Fusobacteria_[F];Fusobacteria_[G-1];sp._Oral_Taxon_A71250000003501113190000000000000012007001001200403023010412005416030066000140091290000000000000000000000114170008000010700000118000000000000000000000000000000000000000000000000000000000000000000000000000008310000000000351000004250000000000260000124409130000000000002377066600000000000000000000000000000000000001201021381911020220120034450363343000020177000000169551001100000000000000000001661000000000014071800000000000000002740000000000108000000000000000000
SP307Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Veillonella;sp._oral_taxon_7801000110200270259370139711231760157503114157226676112331140016917127123501803719690025450247919028576319833382840500140750133164167080150000000371480630880242501301208600106370000019123387400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241180110090011255010822170000000010426696372124000000000000000002400000000000000000700000000000000000000000000000000000000000000000000000000440000122700109390000020130000800031800000
SP310Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium;sp._oral_taxon_37014917202260010904416001600134000100175243005250003133173076800247934472811768119018425310199039270071511243575029010200390027407105546794166807412200480900000110031628300000000000000000000000000000000000000000000000000000000000000000000000000072000000179000011319248509515400023900024000100000012303200015700000000287000000017501030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000240000000140000011003124203577001030002671109
SP311Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;intermedia1814133973151402510311406059261151162917438414993211170253887300018022015682919221213392681916015043220301763337176067848200098125231109266214174845602110216155761181303339132254216366236124004720010501022881369899331690909147322104243000000000000000000000000000000000000000000000000000000000000000000000000000000310003200510075560000012132000017500002400000000000000004815305704243750153037026397791170000000000000720239000000029464742232957325129115530201373462326366392124931676596445855013315505004370211240021842341149014973104502945330025013782123527180260318296349225108005651417341671335277052524730642672628195532590731305584370232632398034441220001050452921401008134263091914831912510177556612204085958111813395438
SP312Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;copri227000807902535800400200000400000191885080117610047814800002426040010000010190225400350202813871000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP313Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;heparinolyticus2000000000000000000806003000000000000000000000390000000669024183174000000000000906000000004801835900000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000067000000016400000000000131370000000000000000000200000000000000000000000000000000000000000000009702080650100700146800000000000075002100000000000000000292000032140697112170350000000650060017000908000018010000000000210000000000068
SP314Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Megasphaera;micronuciformis000000000000000000000000000000000000000000000000000000000002535153258340002902300024025183011154777104558602710087667019121730115503686100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000160000000000000000000000000000000000100000669971000003073231026801148440211501410040485700121412568121129497908675163989138335902602995062397166037134840106142205020350060526602213181711134716915247024500353740853462748903132304013827915724435816058958105510233230523031319377017173622170940574240250000000747021421740117000000005414000190
SP315Bacteria;Saccharibacteria_(TM7);TM7_[C-1];TM7_[O-1];TM7_[F-1];TM7_[G-1];sp._oral_taxon_349000000000030000505000390000000000000000000000000000107071000000143001511804106021000900000000000072606940170000000201400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021265800000017063530137136904804503762150132136104001901600406405601195810919302986768708753836433230449413900140803802412283043146712987162564129047198002166719025305919920418003816677276184316901579805310150190047367921454018000215200280095000000000000420022170009627
SP316Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sp._oral_taxon_412000000000000000000000000000000000000900000000000000000000000002310000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041000890097000000150000055000000000000005297000000000000000000000000000000000038820000000000000000000000124000895011000404837353102539019614200000006356000031902601960220008106500000000000001111903714840173000570570480002162920560101300000000000000000000000000050
SP317Bacteria;Synergistetes;Synergistia;Synergistales;Synergistaceae;Fretibacterium;sp._oral_taxon_3600000000000000000000000300000000000000046001208000000000000008900000000003200000000005000000000034000023031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004337500000615001249240000000015817411004000004639001581010156013439686273697426021137310313170313782221022001130191029210280160001668000100012922200016492211931096007471009700320025452138281000000000000044000026033390000000320000
SP32Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_879000700002001100000000000000000009280000000000140005800011000026000800003015000000000000042000010046000016000000231000000000000000000000000000000000000000000000000000000000000000000000000000000001450000000001570000000000000340000000000000000000430019700000004460000000000000032000000000000000400000000000000150000000000000000000000000000000000000000000000000000049400000000000000000000000000000027000000294037000000000000
SP321Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Lachnoanaerobaculum;saburreum00000000000000001200000000000001518000000000000004524002300000051032008953000000000000160000000000004500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037000034234500000000965371000936243630531700431937000165399026262950141850500704945159670610338612000020036180127444056022270486603300000002500000000560712961000118422700000003700024040000000000000000000000000000000000
SP322Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;sp._oral_taxon_172139227392861471473167170001590691702541397602403110147006626540470005800000290000908442764416579002533360268647037000000000001920000002900085055250011900000300130010200000000000000000000000000000000000000000000000000000000000000000000000000074208430001138697908004530150600006070015101069000000492991785481966000000599905686628114927034800002930519006840640900000000025316512487001842074401070001642383562972794320525108140825014821626323213711948916141362960512227520143021516220813471016797452001426252520153622320887144025483614774803220694045932310022004351100630242337950798210233511019611800406001271390450114286481267197000000000126000000013009300000000001040
SP324Bacteria;Proteobacteria;Epsilonproteobacteria;Campylobacterales;Campylobacteraceae;Campylobacter;gracilis007000016516522000000000111732024000070447527015497140001712174362321925163153126191405801620841781060180800350010605001100000002162018631010000031801351800000000000000000000000000000000000000000000000000000000000000000000000000410112377733234500007563061010910520430344366000048000736660192044027009600000497811901472812701720340175147170060230213653204141161022646818381425132901451050070152547493263338863321139645838938991983198231121212535611883174492197156157100271791612813022772012373942232634098316621401001167513386064982499587620219565548212366118100618942555943813699599210940154153055551954139750701000062003201000003112516001800073500015
SP326Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Micrococcaceae;Rothia;aeria1291693042154933422440150683851929218171509701346859652256241080662244596212311786745927340503810711901282523515243660114209891711218382152431607035267831723554610825346520127176752200182113385663911053616416638872125719393141311115626619111701536391038781071910000000000000000000000000000000000000000000000000000000000000000000000000002171520239000000763076906880115712513133067208173460002272050490044950603090007061340839228634017404348660095554520019936104481017110717365646861937610752372302681671858366973005419513518537340253721154701023645851498567143147367681153415883298388238109798216696254604583342001113589998962128347206441071993101065091679825250310513347666906290568140360127354142225026637256954971331895087205262490132568311813781450803212753862131591100018714017410550221718311032321355777343950312117326841031330138640104180370253476281786189517002570
SP327Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Mogibacterium;diversum0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000063857411632271413983917511543184911483268361060218492111518810785716861275561192527082696694095241826129042127526523304457010901086412338649210408914128133214931481613490951741060228333805123042411296119892306802394711513870251707000000000000000000000000000000000
SP33Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Porphyromonas;sp._oral_taxon_28400000000000000000170000000260054000016011005100431100230371302770480000001601410002900035104004317000013330027334140118030010404223920000311400000000000000000000000000000000000000000000000000000000000000000000000000039050360010349000000006206904605605783000000001636000000000237130975401250700075220001032161500295454618001300009800000000160772478043693912513660525472313102396510401561146041233402023518717170289149914401763492202149186654003424601147147324310212943272020681420036032742109037233201343791592262173126283163076782103690032401663833164791217168120164517120120011901701050022392200000029003525107001900
SP330Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;gingivalis14081526831291133814435102201092115481501701940018034014080020040021161400200001400006100050308612726278550941916747343539716243287611217363844747671431542013900000162239367568182000000000000000000000000000000000000000000000000000000000038870000000000000083286730192007814916026001182965173004421692691572550547653209261415825624468462544481831282499910454950460500018072613313616643051123066395120153190458000000032959032000224900363035288500050004773762186480360510535701758059895883293426546313769351263204988546064112231021552111651931516018151210394286134761184893035419366919311508784440204258802531530207160260824751424366761126528146158513291516771480592106143722764977783423284186906810241726786382594442372235106012881486322397404230144914931000000180393675752979550191680493636250
SP331Bacteria;Actinobacteria;Coriobacteriia;Coriobacteriales;Atopobiaceae;Olsenella;sp._oral_taxon_80700000000071000080000000110000000000000000000000015000370140004107011000000000000007000000000060400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035203500000005400280000005170246100000453345016029227471016949904159201437283977914141202301518020321908209015151001200061100100163627130006225813268208120090070410251462516248000000060000000000000000000000000
SP334Bacteria;Proteobacteria;Deltaproteobacteria;Desulfobacterales;Desulfobulbaceae;Desulfobulbus;sp._oral_taxon_04100000000000000000000000000000000000000000000000000000000000290404001700057030500000040000000620000001500400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006620360000000000000000052443239200000081501500196437220181223310152130001094619886820024226116191013306001233480001501811700891121019900211624534220392809120100119001191192370500000000000000015001400017000570300
SP335Bacteria;Firmicutes;Clostridia;Clostridiales;Clostridiales_[F-1];Clostridiales_[F-1][G-1];sp._oral_taxon_093850700000027000030104200000000000701200071100049017772930850780057131541014223270060038040000353950057012021130000000005201700000000000000000000000000000000000000000000000000000000000000000000000000000224900000002606312900170050025290440002700004723000000000001035401500920605000009140000000000000000051260000000001011191302456280501470322301020138050984000080000010255212012000700030730000000300161081611671502716050000490013001330000017000021000000000050070000283806097
SP337Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_44337325024762621137277800652526059634713298142210500180013731160343523030183735265930462400201410370083201221013129683315035210000000572322326321710206156188233010435058020045000283322000000000000000000000000000000000000000000000000000000000000000000000000002374009651001181070531280114138052000285013100212430410017501096913900131290003600239000000056313711469000000070000000000000000000000000128028000225828210180430010000000590006390000441300000000000000000000000000250109135130000520000000107044018900016145000112006102204700028103033180210910009276
SP339Bacteria;Bacteroidetes;Bacteroidetes_[C-1];Bacteroidetes_[O-1];Bacteroidetes_[F-1];Bacteroidetes_[G-3];sp._oral_taxon_28050000000001100000005054570500000000000607000600780002000040381600141420440320160709008000400004081000000001300890000000000000000000000000000000000000000000000000000000000000000000000000000005300220002540113126069120512133300029700000008866400400800007805400266521941037000000000000000000000096000000000120000612321531011900000000000000004069063400114362001600008000009800830130001101884117032001013000124011240351224909060000800000000130026040020131608053
SP34Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;graevenitzii2189032173515400550000502757943727723829272652589700440007105401730014043008520112172811353139100310131597866121356910015001200161002322155153210645164109005401710361901520911034965000000000000000000000000000000000000000000000000000000000000000000000000001561982496681664212413334010180952110006575781329102347042446408300000023575096802271625620147455181800196186401859171200000001092476171911109815330000046535589340012921907078352821912851150000199541013527273195820072967163713323813658031693695585299065531135325213268244851791130195059841404379295701130403133085513771995805091031751299942034165661960585023371024328522518527135117704204310804660652928671729071551952366164000000000019103919016609210519167147000001200750
SP341Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_3157000721100040000004000110027000000001100007506500007000200010080160027500000036006700000900777190900160000090008000000000000000000000000000000000000000000000000000000000000000000000000000000000006200000000000000000001600062000008900004300547200000045630000000000000000000000000000000201403371418800250003700000003400008230085076004859600016330800320201000000033000000174510639373010001385400000028140241411600060009001700000110016000000173600019
SP342Bacteria;Bacteroidetes;Bacteroidetes_[C-1];Bacteroidetes_[O-1];Bacteroidetes_[F-1];Bacteroidetes_[G-5];sp._oral_taxon_51101360000002900909401079131177000000405000511260841100140076673161201380031373702131000012011560000613200311597013123500141005090033802550000000000000000000000000000000000000000000000000000000000000000000000000000118173441000000180020900266808000300250000023066188000093000000482615642530791090147840010841400000000300000000140130213731002500001553200000440016203119350141550200271188900006700814006203700000005000000015610000046039180140211501800002930080750000050000010050900338014000001195700015
SP35Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;sp._oral_taxon_16952250675000111740286012100332703200083099000065014000343230002640004077009052363352179052221217200009800000119000310000000000233806100320000043390080000000000000000000000000000000000000000000000000000000000000000000000000000000016100000000000000265000000000000000000000000000000021900000337002400530000076000864988770340460210033000077656929527069173181421166930533903003317312514381933102329931581645233438417318720871221524447955715562293872482431039017602473610405869066332693399362561069766966911604137695228210283784981413974088351056151531003269232000390062003300000040003000000131000000
SP350Bacteria;Saccharibacteria_(TM7);TM7_[C-1];TM7_[O-1];TM7_[F-1];TM7_[G-6];sp._oral_taxon_8700370150003301300000003705000000021032700050000121314390000000000000002220971369823817022000102653274301601086101618112524118121170431171620544232411629724671764400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000250000000000000000000032243215000000037280002506362000295954711800161008137300016126787214342818963218361124410073802497557023207477257569094330060000000135100730360400101280033004014062041152156816726622014190021202581121217961093127830012736831501700125151054823301193072975069253200001200103632680
SP356Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_30417085124111230448079045195652013822810354890398376183203416014926906931196131202773914699562087965440091164050171150456137378818392101175114702573430289077334909826100376904114859702157157240390440001816986100000000000000000000000000000000000000000000000000000000000000000000000000733219163211821794122001294113724402614800001674869303521330169005324347179196157000590000251841614960000144318700000000000000000000000000000000011609918701752992627052179211533255352550186292250115827116111341013146162015567601611182350150270011000021183915118370116366880169823420153157132121021462211922270686673467123712101202170592484005200018162400869426000598295066402880
SP358Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Selenomonas;flueggei00000000080000000000000000000000000000000000000000470013000001802195200000016000000000000000000017900000000033000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027000000000501347790000000000000002725023420180002769000002825000000250036036036000000260500000000000770000033250210025018876560117000000022000000000000000000000000000000000021000000
SP359Bacteria;Proteobacteria;Epsilonproteobacteria;Campylobacterales;Campylobacteraceae;Campylobacter;concisus182101182103344187013251375633891055111519123001330033207147180105141988291645283326282203113739412154645677373242146444321683241563525736005934803200118014197231934077103040832305655741818124345936131107855120062916400000000000000000000000000000000000000000000000000000000000000000000000000816348360118516954117122794352177510563161542166158118930065735572775296542773311863204774355481460811114833701613469192663312571866521688650355636203221601931190756687215154210317317625104827610600025189468340463331622615726003443694261861111138716232141173531662132225170411993142581974069514952644371021444408495167477212432321764415727773761038129649263280417666134944101193174228531132281567072990680155733164414289018617650224506673293376051022817268506211826482027606014494512669753419639921833826223614436091584071194012271406100752434593613110885910812178436120346203300307
SP36Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;flavescens|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
SP364Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_2190000000080600000015006000000091501900004000014000100000017000000023020863720210330053190130142111103112101060330521640001300145604401000000000000000000000000000000000000000000000000000000000000000000000000000000214729005200000220472531000090420016000000002800000000033562925326414900000095001201700043170009643006000000000000045010364170010191016101707233541665130151632324206000014011077001213013461900025070066010041880293812243782812221570000000004600412130000001610001300140605602002022000055190160
SP365Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium;sp._oral_taxon_203000023001821020000055860200527003005000000000230003600004100009004800234151005300027003710100005100000000000000360171200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025677296000114011662114231000340330467000000001130000115400001701331430144377104280300020701230000180017800000000000531650003000000140000000000128197004393600000061000000000510000000000120000000600027037101000000
SP37Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_3003008800000500093000101400175023000001002001002125111960015001523000850712070020453655791900000000000129700007000125200481580090000046100000000000000000000000000000000000000000000000000000000000000000000000000000000026000000001670810005800000000000007301390002900000000360047000290002410015000001292537472233917360139001191341150000012055138200044246237020555300570241070166641161600004884990134603190821391223289039027001220017801818932254002114101323986003323202220000268017011017265184900028000000188009000001400000057000012
SP373Bacteria;Proteobacteria;Gammaproteobacteria;Cardiobacteriales;Cardiobacteriaceae;Cardiobacterium;hominis907500080375981512221109190720680004261122097187991491882001940989630012162109815591176123530270860221800066012245221455161327394550487321627200248103193907855000000000000000000000000000000000000000000000000000000000000000000000000000276600710880040091061450351247630748033103177442830000074000001355000000043038032420240001022451000155474937905820023200827136246613273006285363731355330107883716334157265186121132314179659185169200245601066761307991206861802876111812812001661103024185866831075314212805346914888301121599026100568135208041181487965527564901168064811811805020275942892385367710008008121076002691061939022030310022318600170
SP378Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Enterobacter;cloacae00000000000000000000000000000000000000000000000000000000000000000000000000000001222172006872540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP380Bacteria;Bacteroidetes;Bacteroidetes_[C-1];Bacteroidetes_[O-1];Bacteroidetes_[F-1];Bacteroidetes_[G-5];sp._oral_taxon_505000000000223000000000000000420000000000000000015000000000004200112424682100110000800313500461900417909004000000003522000000000000000000000000000000000000000000000000000000000000000000000000000821179002001900002593091075000000986000000000000472296376000000000000000032722000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000001500009004000000002700000040008033
SP381Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Comamonadaceae;Diaphorobacter;nitroreducens_Oral_Taxon_A0700000000000000000403000000000000000000000000000000000000000000000000000000000001235106009001080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP382Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;sp._oral_taxon_25807000000002100000054001400120200500000280804004009600000000078110007014150006507040011000000060016050007009028120000000000000000000000000000000000000000000000000000000000000000000000000038375730710000001939044172183900900831104200020060151820000000000021282170190004206406600000000000000000000007300000000000170001524900195030001800000000000230000010001900680000000600280000000000017512740444304224000000000800018004051000016050007009022000141500166604061
SP383Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;lactarius18917385275183459225947284325845819320111892675811421162721234663039445166388863294911972123415785118371931212000482345664259119179436613732322110116000005031120861321691737175000000000000016318046558332730681538659000000000000000000000000000000000000000000000000000000000000000000000000000077437849440220274250111492613011168022104146461413221162791713551730336396114242210048824376108335689659252511291499054000011475245000000000251976347221538000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017308582182081631730547598329930791598661592048271889135109173173912710
SP385Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Veillonella;sp._oral_taxon_91700000000000000150000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000130938400000000202442000000001900000000000000100020034000000000000000801000000000350000000000000006210000030000001900000049000000000000000000000000000000000000
SP386Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;naeslundii00000000000201000270001541015900000033340040350000000360000000052000010380133011023031002500340016000012800000000002580000000000810000000000000000000000000001700000000000000000000000000000000000000000000000000000210000000000000000000000000000074000000000000000000000000180480000730000000140000040000100000060147221623207517441433405513525020715613910910606111423672371506401276069540702219305616823354531216069011426475354018105752832934051274896181213350037920123392711820000049013230180000000000000000000003400000340000
SP389Bacteria;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;reuteri_genosp._233159180000000000200030003000000410006670800400000090019186423489514224047901450000000620000000357005002380700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027700000000000000000000340000000000000000000000000050000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000
SP392Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;micans00000000300006500180655190380020100000142217425190035130150018231928624532053981865807541015360700000981013906710005161736408000000800000000000000000000000000000000000000000000000000000000000000000000000000000000039002500001600760143638000170000000000064100000130000003003044312162391401700091700000000000000110000000400000111412000091617016211220129001970131003705040014004000007000002600066000054000180023029662220212605300030705610190980600037009000000800016470001500007
SP393Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;hongkongensis3974024000354614460120213585223233118103267141342002012361912705928396821037506030652515238018251818901220456004517002610021859470903913400990178614111073061443425126103924131543615270017194028506300000000000000000000000000000000000000000000000000000000000000000000000000000510492110034700000008062590252068737253000000002209100000011720309600001051091140000511667715327474801624471607468255883251174336517727313836731141041299647142011865344174961831776324733010411107188728507922169730401340125317415626010242031601982302264390181234341504422510297238152503059737410282321961671891752101014802283251576461484710995226293371593901024541189230147641684812846117156181157902943251000110000930133038027001719502820240996200380147001379
SP394Bacteria;Actinobacteria;Actinobacteria;Corynebacteriales;Corynebacteriaceae;Corynebacterium;sp._Oral_Taxon_A16000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010341083745006924715401064580015633553338163164160186700032290002901501400721590350000013012016088000014206635211302500034000031040135818430000000000000000000000000000000000
SP396Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Kingella;denitrificans1503124013581824540343119410272918216163228258202299254170156926252566010134371849811953375023727523924933178206472156717161901440235104416691054215823054264745513612118414261179175502390112820000000000000000000000000000000000000000000000000000000000000000000000000010411202255081175129160660842451363979735033714754169320481562584675003384286693212594800056147010901703321671523634598632742368761200000034100111125700386316184528145243383614700002134035011011181155706404303422170000641500005301331002300010121440692180880241160111650000361022800056848106111618424010292652382001100160128000186959677001271222311076127113347085016250023039044515
SP398Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;shahii600000028000001230001500000036000061612264704660017132841511960243139580911619062129101523428000220000027007200000000326030083000016000001000000000000000000000000000000000000000000000000000000000000000000000000000000005700178000000000000006000000000000000000000000000000000116000001512430000001600701184022000140283314470070000025000000000001400000000000000000000100000900000000000000000000002200334000370000000000000002700000031000000160000000000000000360
SP399Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Porphyromonas;sp._oral_taxon_930457431018211402966117137142802353622113910400340030134890123089165192900221511610417088233707411721183157156349788947633767171661814282718801723629900356200256114000000133009405000050780464421003018576600001006122351210000000000000000000000000000000000000000000000000000000000000000000000000000000016701890000000000000810019384000000000000000000000000000000000104000000000008000028000031000283620000000000000000025063171500000000000000000000000000000000000000000000380000012000020000000000000039006031077900001006120026514100082001353046
SP4Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Bergeyella;sp._oral_taxon_32219138102551538741200162211126690020193101605000051552245401713675500116550400158217380108132691286952693041424011122241704712112919305311243109486617218929371630369820000000000000000000000000000000000000000000000000000000000000000000000000000201653344423712023129240203909831615565160751469597441976612948135706722369067194671881297255882120307221561246805757232519639045369254183764240345039120286495348352341343046501039349205016563162371312280017133822431067320171073272168859119232853714525281289780467339809406202137734841670473774666539563958221016410433940682353975575082139294616817454563206072953552672115472001272326721444269338558559524112465720377011633736466010112316594615436915520746307387671791504594172788445310644645966172189293818313618381335927952106930426919
SP401Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Oribacterium;sp._oral_taxon_07880000000112000000000007000000070005001701104060602811681422414110015090612300000000000576400070000000296000000000710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252600070338100592011770000000022393600210050424216170550395701738114017360290813820101300150181390375208508113112550000500800082013382190012225128305187670567808000011023001110150000030000060000000000000000000000
SP403Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Stomatobaculum;longum000007000000009700000000000007700000000007023000011481108000015000010600000000000129000014000003154001810000001001702100000000000000000000000000000000000000000000000000000000000000000000000000011600801091142300220000012207300011500000000000109600065600000194000000000730005700232515390000097922134217019000010002503650002700008594033000371360113381711404410623202304773647405900990645000114807011613996705110111900061300360002600078000350054913925024705708018028586304720030700243013300000000100000011017006300000000000
SP406Bacteria;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;pseudoalcaligenes00001917000000140027019177210938500000008000000000000000000000000000000000000000000000001930500014403124000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000
SP407Bacteria;Saccharibacteria_(TM7);TM7_[C-1];TM7_[O-1];TM7_[F-1];TM7_[G-1];sp._oral_taxon_346000003000000000700804151805000000160000500090080083805827183501318800132002820431500151582005913000000000111250505870120400032171324250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025788475422019010239200630452015924000160108107234150762146452212251221334117820471217478257369412787568192135217277861191072294413441890112435520972354622440379324715540156101049043018802181536118015389503969441879232111512997435424721204706207520942161514412069601301447005008701205100421713320471301515596400087
SP409Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;sp._oral_taxon_26200000003561530004000000030003000000400021019800111580017300002604005508124101247458000004300000010509011013201208449150001002103819000000000000000000000000000000000000000000000000000000000000000000000000003507100029660000029044000474502166803110648000470220332890000000000000013801677940090014500183400000000000000001259000000000092229000900007021008000801200000170000000350032300000100000000000000012012014810000000000000000000000122800011009150001002100559000004300029
SP41Bacteria;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Moraxella;osloensis000000000000000000000000000000000000000000000000000000000002100000000000000000002111004181270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019000000000000000000000000000000000000000000000000000014002900001300000000000000000000000000000132804800000000000001800040000000000000030002000000000005000030900000003000000000000000000000000000000000000000000000
SP419Bacteria;Proteobacteria;Epsilonproteobacteria;Campylobacterales;Campylobacteraceae;Campylobacter;showae00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000380761941414175001551550320802801029802244301020157268478810703000910140283446446848164160666002923020212044161590014800179153137148633316441478005184804303931026287625000000000000000000000000000000000
SP42Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;elongata2619193266962102895451558105832399528164422054219186231877632530615410544715453693819049927220330113414658262520052187652511063938558549545117510636012860448164004513550171397133152510135985116252170752521314275156202026023479733029419610000000000000000000000000000000000000000000000000000000000000000000000000022317021325916003910068856119372711252424244815855129664432526177446570143189148102318054922323053101293293731758500487576022174744464479311023548623011822355035254023071883701327740000011109832145199244335331911006682171581741810117176275437734921532081238418715247183175828616660713010321014362202144871623514577635467614114163863077156024901483214432743010366720228597461443347575016851265563499717362825961011231530122366165751991092393234513071225002510048562020264234710033050010943004516116400290
SP420Bacteria;Firmicutes;Bacilli;Bacillales;Staphylococcaceae;Staphylococcus;epidermidis00000000081900000040000000000000019220000900000049500006000000093014230000000000110007037621210101055413000080000000000191500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000479932205606020021975001124619962280003009121127000000000000000320000001800000000110000000000060000000000000079440000000000000000014000000001100000000000000000000000000000000
SP421Bacteria;Firmicutes;Clostridia;Clostridiales;Peptoniphilaceae;Peptoniphilaceae_[G-1];sp._oral_taxon_11300000000000000000000000000004000000000000000000800000000000190000001400013000000000000000005000700004808000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006009952029165511202345042040461006013001906365200704003240449256000911806580801912801290538442240161014940160388150000001021314241113714700014000000007000049084000014000140000
SP433Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._Oral_Taxon_B5700000000130000000000000000000000002100001800222101119762927000060018902770260300112790003200000243203094000282000495204225000000069000360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011404800000000610004104800030000000000000000000186051000350970000000000000000220360000000000000001901100165025000000280000000180000000000000000000000000000000000000000000000000000000024350280000430000000069001800000000000178
SP434Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_30900000000000005400001000000000000000000000003100004400990000000000000000000000000000000001403954000000470170037017000000000000000000000000000000000000000000000000000000000000000000000000000524008762434416002830029300001000247000000960057461431250020062929155150189001820000000023400000000000300023700000000000000000000021111111009201100675120504526879800108003973012400900047000280000110075319034340003200000004000071021421821110000000017210110000000000000049017003700000000000000
SP436Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sp._oral_taxon_3260000000006213000300600000000000122900000260002008130816000000000005906715790007000000009003620105150081081217000000100002130000000000000000000000000000000000000000000000000000000000000000000000000000009600320000035051168004700160056000000002254264300009900000048326908101020000014112800010135285159081945000000233100000007821194103318343010113237638524501231563034313719060717261176640774345653320432949903111233063920304352459355284016214890291240213118130651546272942173280844991774179952371456174691838042076332710627952380700900119120000000000001701100000001338
SP437Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sp._oral_taxon_33200007654994163100500010000000600000000000000000300060000000000007290672630250469000680133215091292007439000035044101102500000004100000000000000000000000000000000000000000000000000000000000000000000000000128206519202212300065528424277000012500146300000002841003647634001020720800002111393184433420142362006490045204400000000000000001208921800012000000369600000381130403100402124000030009911010400000000014852000133031061000000015921510000273107380000001900000000004401332015000300010110250000000001700000700022
SP438Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;pleuritidis1705950000007500330504150045701500061318011016600000010270245731501600000650116154797548213318070000000010323119023000490518077006901113500000000000000000000000000000000000000000000000000000000000000000000000000000000240000024000410000000099483400000140000034000690000000014000001920001541261000000000003626000017113208590000000000223120000619753018073053303625214004621127000003400415100000311917030410000254000590000500010102201403300260014034010224748100000310005200220770079011130024431870420001240
SP439Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Lachnoanaerobaculum;umeaense249273964155401231318016823162630169640289182604214000160000382116295842191526122315160020035332535292317041050192203195363007410284806155737793813987318640115881481713018139252507224330562042171175000000000000000000000000000000000000000000000000000000000000000000000000002575905736443571012463354910858025154731043687444385809127099002572559549740981011291114700360800210630200700135115692002300000021143013143140099550705901436000251818082436111249026519939832243481911101251436113014112164012401844237752338034458129158040912706930810027736231012386514443288602201101000175517522245810131372251348015621972022200544810848169836388322124577025684311231181126300882634058214300363000291251063330
SP440Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Lachnoanaerobaculum;orale0000422963200000007000030000000000000003800000000000000347600000000000000000000000000000000000691170026000000000035000000000000000000000000000000000000000000000000000000000000000000000000000107001280708646070000000000001090000000000032771003098000318501373070000000361110000000000000001029128163454200000000038140000550005914810473830010401101298468008419003860360600522600860000073910001591120790650480160016385317701400072677142365005601733015340000161817701043700150000000000000000005400000000000
SP442Bacteria;Synergistetes;Synergistia;Synergistales;Synergistaceae;Fretibacterium;sp._oral_taxon_359000000000936000000090000000000080080006000001100000000040000076270200007780000004500030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000046154000000000000036010608851642171936000000000001170140104032000025090237000000120001689083014001023000800000000390000000033000410000000200230070000560161000000000000000017000610000000150
SP455Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_4630013000002940000000000000000000000140000000000000000000000000002646011153541030018000000004600151300222330340040000000000123800000000000000000000000000000000000000000000000000000000000000000000000000000690000000780000000000000000000000000000000000000000000129000000000000000000000000000000000000000013000000000000000000000000090000000000000070000000000000000000000420000000000000000000190000000000000000000360000000300
SP46Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_305100400100000000716000000000790000005070000700110000270044160000006000010000000000000000000000025290000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000015440036197000000000000000000000000000000100000117004550000000000000000000000009514101700000000018001000000006423310003902554098185127089428393013701402628705914014843000260006000893301282210000007000009120068834634359010003423110080000370685002370000000000000000001100000000000000
SP463Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;amylovorum000000000101100006005052200100000012000000001400009003600360002000300016027096270011400040038000000030083830000000507000000000000000000000000000000000000000000000000000000000000000000000000000003700000000000000000000004109000003217040000000000000016901040002400010825000000000000000000500000000700600017000055038000012000120000131901900085000500000000086830000000000682802538309352501020000189052000000040080008304000000060000960001150000
SP465Bacteria;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;sp._Oral_Taxon_C61101514000015785810505023932611165723434523312793663107282108110751722116203392194160229617537203214245475312853117261650172866666711219215616115539210001000000001400054542366111054707464914200035000000000039650000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013106900008771391101311700660210975000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000
SP477Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;oris79060000000003363582256500187402500108003200000300640005521914068004012802522007002904999074019300000040310026000001800000014001680790000890002160000000000000000000000000000000000000000000000000000000000000000000000000000000001690000000000023314300000000000000000000000000000000000004220003800011300070010880003703100000589215200000002853646035024432025301080658212937016116112710000000017018000002922320163325000110000036000051126705601892500000000180000003100000000008100001200000000004004100330
SP48Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;mitis000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011550000000000305275400359000000000000000000000000000000000000000000008300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010866175703201662811368302671357482219521208793426250445143512171524842959302195413322761510146865410959142034177613414506238476181560232126201050026022998142735789484564133455045384622915574572717227718114919268665925673866418241947452719244125032521693389503900499151550055812250105214382272162650851969954000000000000000000000000000000000
SP481Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;dentalis0120000400046000000133143100600042317015397418356922081811812702110443055201170164220065000270061800000000902001844101200003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000001400000000000013108500001011006000000000000000170000000006016001624826274001070383119261931019523158000101207000080088015900290120800116001400314000001115355222700190900005304140381206618038000019006120000330000006600122700082
SP485Bacteria;Proteobacteria;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas;echinoides00000000000000000000000150000000000000000000000910021621222383181150800121043350140265070000000000000000810090000050000000000157000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000680000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP489Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Eikenella;corrodens001000000010173507010060902000290000000000961101901111004002001046000015000047236702302200017000015241519162190170000610000000701930320000000000000000000000000000000000000000000000000000000000000000000000000000001410011800000680167003373001900000000054040108000290000000012367000000000005122690008117002353000002309028000000038223003116478138173878183220069126259851731212388465236628096311172071716505142246423587703141382511265885323818017301815368288165033502160513710416193159128259873131012666861143203822541201865786781283849139200066040000000701928100254010021600
SP49Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Haemophilus;sp._oral_taxon_90811640605502632517393025812255982771070504346320849201400140364758431183718123433611690296351770168982321032771252110154215144607179591266003093014605243356639311285943510746018916303041412371188300374578002785952970000000000000000000000000000000000000000000000000000000000000000000000000000020000000058000003701500026023732021300000063260000000047000132831992500132200002602137980003325000000000000000005881670051804616317967026019755332101173222222881781320293203378216113118410194446026000111714703672029015000582570000553900011411369160450571360732350000053240069620352605900285001198300374578002770060001461100524200
SP490Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Shuttleworthia;satelles0000000000000000000000000000000000000000000604000000000806120251216160004060000060000640007700330000000000018000000000000000000000000000000000000000000000000000000000000000000000000000055000011000000090000391800000000000085000000000209000006000000102900041003000000124134300000002816131000080400240001701280011120002301002450090000087000150013013141433001002504000190001000003102192801923021000040806100444127280005500000000000000001300000617000178
SP491Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;sp._oral_taxon_2575760000000000000010000003105060202819100258260006212041158000601301300184664023849241002060000001414006880100013005100322502226326002001460480000000000000000000000000000000000000000000000000000000000000000000000000031330420013000000001891511949002165005601070002701407595440210250000002122211500036111066010700000000000000000000099100000000001827000002700002603548340046000000000000130000000000000730000000000000013071800000000000002100016901414036121000320022263270020014240110207001370000161
SP492Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Tannerella;sp._oral_taxon_28637019018173670343021492527167147242323493642621003121122977231714166883925186025212828233263213714021347116178750220561682692390001091700570015000250023171639124047212050323100261205000000000000000000000000000000000000000000000000000000000000000000000000000480380061044000380074006317035370000860010200969800003511108100000462490724305929724906801222831100006117119260118917012291120362602116152208224174931936045345761133134073358703091092271961498210325702591951916252017936881381459110365337415163160261282014359153294603801063810644779320001994833236033405232011501315410780064015834507328247905700021010109002121003231002612260249300901800140
SP493Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;sp._oral_taxon_17000000000090000270000000009000000000000500001750000000008421000000000000000043000000000000026000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004900000171156000000032013280106000000033220146229964122710202207637412914501998176200706050180586043470510581805003881440901884247106051037343534240500550121021001717120566616803231763202519004503500313927000000000003300000004500000000000000
SP500Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_225000000007702321930000212900000000220420000002000390000560360000001304500034000021399000138002801600220026000001124380000034000000024700000000000000000000000000000000000000000000000000000000000000000000000000000000000000015300000000000000000000000000000000000000000000000000000170000520089410000000000000260001500001811986105704508003400078320038002800000000000000074111000000017914800000542960360470660110370000025270037440001320000000003400000007600000018280161300
SP501Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Peptostreptococcaceae_[XI][G-5];[Eubacterium]_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
SP502Bacteria;Firmicutes;Clostridia;Clostridiales;Eubacteriaceae_[XV];Eubacterium;rectale0561004650143001007001091211812000000286168321012540048109753778035220131500106000000017127170000000000000000001900430300000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP507Bacteria;Saccharibacteria_(TM7);TM7_[C-1];TM7_[O-1];TM7_[F-1];TM7_[G-1];sp._oral_taxon_95200000000198280000000000000190000000000055039000001000000145000000110530241622106860000000220000000000086900580000002600101700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133345515900000008418500075085777765118000104000388016312618040012681000202961700600466300713018002452125100101001492346603300500000000000001018358641578311214801200003302417014017002200006700060000000260000069600280003136
SP510Bacteria;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;brevis0000000000000000000000030000000000000000000000000000000000000000000000005000000000000000000000397729200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132102114001450683133150001800000012700044672097000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003978692000000000000500
SP514Bacteria;Actinobacteria;Actinobacteria;Propionibacteriales;Propionibacteriaceae;Propionibacterium;propionicum00900000000120091300000000000005000000000000000021090004001200148041191801100002500500828000016000002200013000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344800000273218026292570751363662824313495163126278137100101604353337754920774305323381940400550503481071142324389812321103219828022910553303337070243923591140198172519468028037833019233624281363451009000230001300000000000110000240005
SP519Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia;sp._oral_taxon_4060000000000000000000000000000000005000001100000000380000000012000000000000000000000011711162002922500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP520Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;vestibularis00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004415790154257030214331370252143024037901504973150220020126605750122065000000001228134011220791880001070437317000119002650257618032060253131194023000068020905100181001610970000000000000000000000000000000000
SP526Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._oral_taxon_05700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000565304196129079553487898751643125483314174713415134101373988109296520213124613628675016425105043803202366002396304600550037014800450328098462830744375901002120004411364611723131000000000000000000000000000000000
SP527Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;sp._oral_taxon_4480000000002830409630964002000000001220000000000000030000300000001500000000000000000000060000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024012012000000000000000001008612218151021138371030453510120361622006982411915130001322010542141902394911320140800270012025038000019021659662011468407070003811018080000000000000000000000000000000000
SP53Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Porphyromonas;sp._oral_taxon_27932816687843270761226255213526517571061253671641334098008151124601222528412410109482336516617523112430115816319674617133915189003983681372414413928785102243078133207224213508385292113625201438399131159177121237651051058731858107851519746996681551831642742133313964548882990644258582946110514452520116462298154725710000000000000000000000000000000000000000000000000000000000474000000000000000247738862123632811265101219226599859640812931564458738115591897167840098463351156875443255767233348372077337271532483288699922668351543437425015444644427729849501030449015533916911437475723414597074335616129191150622038411820330937681868987151735814161035394635134830612848682494256076465431662817299703329471893345124795112193609703101882114383532544165422113775241184804206570691921466016015921165515526052892788477002278105911050763861260627016922182176191539571442132444399699735632432813710869724551363808602258699162262312103425973986076175385751150193016682138846814438123116364499419631746233121828105947626375666452619153106974440758761659378446847990706592570829261119165826451214653042550146340303177321526138655225920
SP533Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Peptostreptococcaceae_[XI][G-1];[Eubacterium]_sulci7200174970500500000340309101104014120011009010800001059050021025210006120301307191517432120201009004160019018348490273410111074836131445129215271621315150480000000000000000000000000000000000000000000000000000000000000000000000000084602361101232612627368427732760680014921230857645802766311960121271410001131421660180821446608295473677440892070032185166001942813814231400000006953290001521990564101201905000007163470180762810252197305902711461781753494601397654002173801511201741553632705262311521418628052624561575075100284130854525830267278212623196401050242032745603670389191574520695703448182289583722981403510637864571168248239626185221414321601002427125749013153513121561016913170163313010190120400
SP535Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sp._oral_taxon_8640005000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008300000012000000000000000000173000000000000000160019219004410006043044220013503934057000000000000120000000019310200256001995051000020167000023029000000026022000000000000000000000000000000000000
SP54Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;hofstadii45000030370104290001160050000055036000014837700470140000282818830003334400184809337005901520010331029000000001250194100001403801830777000340026077012102400000000000000000000000000000000000000000000000000000000000000000000000000000000540365000008800000000000000000000000000001415500000000000000000861172250140190983723003031310006848125124163110271929003502764102447807870511649394505190840001672821443642321055109809700008905904556831303620151062000590350000158800783938347251203182005363016600110004651001230027117007770003400001110115019303000000000450
SP541Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Mogibacterium;timidum0000000207240000000000130000000000000000000000076000000000000850110007002040000000611000011900019710000000290007000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000620000002900036000100000000000000000000193502800000003000000000000000000000019320000000384643361041941591041600182701926185941479656852673730000220265300279301510249201546142000162124504160330346299633330847833380509462110666039002001359322222231699620000000021011000000310182900072000440009
SP55Bacteria;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Moraxella;sp._Oral_Taxon_B07000000019122271832310000000515004005500400000305930461150179010000000130000001531307942061000000000000000000015350019205980000000017513360000000000000000000000000000000000000000000000000000000000000000000000000000000000000101600760005500000007850005000000000000000006000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000948000000005302192000000000
SP550Bacteria;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Granulicatella;elegans132145512114301034647537016240366150618822120190216273332207015119714821438424328425727711816614669185138223279181722242965545294341162831176964907238765143810071699150621131292032123303310308210051173290213791424362261144588240679106327072565110915002312403116517676300000000000000000000000000000000000000000000000000000000000000000000000000001040001110000022467000022800065248109000016000002431580052081000000077085099539443400012693859180694144419751741120014149916200385800580522703127410716785811061957367011100000000000000063612450000412000001240010500000000000000000000132000000000018520002500190000000000025800334001867400347230531121500241110311701503383440210470051203410
SP553Bacteria;Synergistetes;Synergistia;Synergistales;Synergistaceae;Fretibacterium;fastidiosum1020000000420000000000000000000800002000030000104006011154000000109151590002601503301500007000000000007190290000220138170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407513500000006310001700000261471841420017000016240002000470200330210400141018003808001600000079014019001112000000105030004340000190034786003700000002700161318162000000000007200300000220133200026150041015108
SP557Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium;nucleatum_subsp._nucleatum0000000400000000012700000000000000000000000000000000000000002450000000360130360000000046000000000470000000000149000000000000000000000000000000000000000000000000000000000000000000000000000000017300000001010000000000000000001430000000164000000000000000000000000000000000000000000023680360110050000000323700049217335780065860005901600103700000000002704826801390001748401800022229629023003371802210363024151764761011300000007300002101690015030006530000035000413126100370040000000
SP56Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;pallens871233711711225436704020401011983644312665291332008720054572786136225252841191743218727013738388351171674055711809436138041147137279077286921915462099017042191250678613422484832061316111012668513415516869720471425181266300119321402113000000000000000000000000000000000000000000000000000000000000000000000000003433512895333666417769546735005310947014954603004017452623197616187227521982378362005101149501125119142657800112950913543308618036857302055449171614198226261110430211612000502883451071450025745006237233115540561230019361271151217203662153673759415577636413252301145131010001006248350971130111324643050968916814933391058634254838390827614416522007164727627355017282351615018211503274881400392379129173462649153311163124102154021761836433429119663011056117312022943944163509670453183466233647152955162477113200213002822815339529159063760499447198773310103335922015750001711604319470
SP560Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Comamonadaceae;Delftia;acidovorans00000000000000000700000000000000030000000000005800001503206205340000000000000000000197240003610917251800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP566Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;plebeius5800000000121900000000000000000470032921669201245302021290152830201600000860045641001300000094000000005110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000011000000000000000000000054630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP568Bacteria;Firmicutes;Clostridia;Clostridiales;Peptococcaceae;Peptococcus;sp._oral_taxon_16700000004038000000010700001100001400006175000001112602501100129061119312033240101521051100062861610132600000001107511000013002260180000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000056000004026870001200013696000000000642746142300280152690210651870137475513027046162242415113411416144022006702501203004712001500558021001070411451104965860160738443000125000044901958948430616001200760000014002460120210500250628037
SP57Bacteria;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;gasseri13296865000608180034000000000000045030003302900800000000025239815033198231775800527687205503000018700000006112010050424020030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147000000000000000000000000000000000000000178378221500021000000000000110178153100001091600607433000002000000000290000402732800000000000050400516700001704802101004500000014251816000000000000000000000000000000000000
SP575Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Tannerella;forsythia243612601014213390006160232091532210184002345018103019088613726465534201916316010800181377117050496409384542124577281414220332237443147141426018172322210833320380012413323137000000000000000000000000000000000000000000000000000000000000000000000000006736715951380483400451201810888077022109380907132742300600002115773813321004600201506231190367211301200640212744000180290048050002412101426514819417900150142703321295838158670163205308283621915951471782041632436316936200232156383335852985591601241992214391393608033885160841374228920952902217501455981288001301438973613611606544786027260230220126641103485512876037035300013050203600129133213501245771415252213323126
SP579Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;cristatus2091121022339838482701057021114179717125311832464114719311213121982326910447812902966059245812715712543183981281121491469194552184117108141127587410937854178123575752081691437932812968723743761381905858111531879036617510719615818730734811243023214835210036550387320606216178216000000000000000000000000000000000000000000000000000000000000000000000000000000003341690000000000126000157000000000000321000201264307070300000933221590394017200540657981838168546671106126580123017226165234193340287339739146917791789236136427184933612044927293736367286055162399500801641051891272482473554843897166336148444256825523801085317292348356036427344854611140650327231258141041010105305301392129731420034503699927219137055041016913101571571022131110167213113143223255931292071342708530749337297560145358638733330251341213374201940
SP58Bacteria;Firmicutes;Clostridia;Clostridiales;Ruminococcaceae;Ruminococcaceae_[G-2];sp._oral_taxon_0851300010933000000040000001300600000062000001406330061174392804003011045968163135131802048170028120801323625160231810613900111070101510004996677000000000000000000000000000000000000000000000000000000000000000000000000008658162204622067076042014404011600108350500455573217666004010558023415157581264173272075303436030221692018054380355715484937010013070156642229130034910342617946940000029943388303192221013042174496992556011191113171431101632232377315010307954004097601016109125172242623405644478040216016690735131066001290331302803146031760431327015401318826590441140389939844747258329120714322000000701015100050913513180611780029190
SP581Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;saccharolytica0000000301120000600700640500007000001228001101390002033034260012001604501964730230130040014001300100230000106101001000000001400000000000000000000000000000000000000000000000000000000000000000000000000019041133411048000204026162100000340000011000030121547001217013100000099284211544931322700440100700004000080000000000000000000232430191601017596750385200354636330058120410041002101739001001919010550130320043602200110000105922573750037001161000001437142612150140000006300010000000000023000040000
SP59Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;aurantiaca0002300000000000022013000000208000000000001326140106000008060004500019036513883714052053126000000662066160185153049900007202450220660000915300000000000000000000000000000000000000000000000000000000000000000000000000214350005610540258555793505500034233000024501710010500465023075281077841707300006859404000055205012314810505000000000000000000000000000000016143312800200518002541001547542900001132000000000018002580000120027700009040000000000004894151386919130454800712700000023183491000000411481321300002560223568000000406502060000000
SP595Bacteria;SR1;SR1_[C-1];SR1_[O-1];SR1_[F-1];SR1_[G-1];sp._oral_taxon_8740000796130377018000000012830000360090000000000900000000000120000000715425649000200000800689280228010178651713098022301700003711312000000000000000000000000000000000000000000000000000000000000000000000000000000220058039169000091000000000000076024000000005000001627026291502400172000122002901060714832006326009001014642238000000000643815224000013022000494219210537472313025247961700302463100027000100158000356433158510000110004720490000173157024048680469001901420010278616238700000000130002100000003700000000008150
SP598Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_21215200031000200280221613718881350119240145079605608010800058512707290003500044411002055021210051250106506908134242270115670412000270002706312678044000282822300370040000000000000000000000000000000000000000000000000000000000000000000000000001671058332800000111016321179937100058411824302590460000000104571192511860031171000000025725502311670723280606876761441002380126562210125943000330172400060302657000721019622359370313916916749100675410116776569600292016832451071875009101727000243442252251023220171035014011015036039530261014611614212798017088194844043018000183153492066009900078000380282624100370960668001432420200240820
SP60Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._oral_taxon_4310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000087000000000013500180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002762425015221232627167227243387149963014727266192315487748946603902971361194100611047888632122914958848210071818549228853374532281070437316022721479029110469337159028520360122160031862661482136717237695903042257708518656826019211364822626224301168664365285000000000000000000000000000000000
SP603Bacteria;Firmicutes;Erysipelotrichia;Erysipelotrichales;Erysipelotrichaceae;Solobacterium;moorei68002061633230305010210015110016053619007006090221472416037891013301230182910152090221701410110293792616154216141822512549257266085484332323862012219630142345555882783391520000000000000000000000000000000000000000000000000000000000000000000000000014576548225461381232234671777564146127100831019357584137668194330681054010740802522011230014016222919776530327314343289980297237132165258575101973051741338274331070193819015070627171572057994415910346778340262389228394171710721175325483230338217320333973313635268651197602294645521131214485104926931742301581131016832261675289055312153144424354044220412191146354465104605579330469132552269368161271642326242785131770572697197812145602742340330974797230181332655490952198328436374620019830143355765832892829912716551629141822520
SP606Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sp._oral_taxon_3360000000008043000000000014000000250000010000000019000000000000000660560420000004000000000000000000000000031016000000000000000000000000000000000000000000000000000000000000000000000000000000001200000004200003200000000000000000000000000000000000068470000017570930001600000000000000000070002500466818011470162102455173432067523522034341323923020001236440402330130081178391340046050018170000320000004444423055482085250313503802103716007014000000001000000003102100000000000000
SP61Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;parasanguinis_II6424034182000000022064350000000150860054011122290003130034029021002636406872048397110394823613644168214155600002400170059000250004200097130300066000530244182672511300000000000000170000000000000000000000000000000000000000000000000000000000000001561633541059154420630009602070368520069631960003610400004411000274000036813021531800000013197476000007891952729240002359002628173600487342358430578975145517311377632994016335162303767506442845215021311923918505579320051114233761696557417424513292559615108265640386810058636715832599332271262818775416615488623135178217401000698118412580312479194931711139521078432335715551684132538318530219330141982137629471102366118316103411077420917767101758213967131333869660011500011233007566000530246184673113410770000001700260
SP613Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Oribacterium;sinus7500250013020040011098100200010290110151600170220011801300160011291500814140032213331183681004066074185806101091286926755548851696710134169166740313911696139532220141328797316910700000000000000000000000000000000000000000000000000000000000000000000000000970798513221697109664601120123681788519520217018770499895004900410113153000135172146231015219700000004908775058132015630533188000243615786434748003804890851906233886932093341420927418450120623899670146224939619265036757572310084874732804433325251905256063858712066381981126110017464757306371212142161251943478179157530391418164460460712830457003794992175019029298236779570272462057564614211475687365722444171197211535176353837578242687753712969613950451533442179915101402101443389474620417201909712840112540
SP618Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinobaculum;sp._oral_taxon_1830007000604108390861601021141416125100000022122301160600303356091121000000123601441555011893670050000000072161600421234031705970000050003600000000000000000000000000000000000000000000000000000000000000000000000000000247000000000007600000000000510000000340073000000000000000000310040270000167660470000000000801876000002823151233563173828161103043891186018910846471818432038625341825180203313271139030163214393211205411140188300003432631924001596522619715017216140702801401304219122526000000000170070000050000070000000000
SP62Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;melaninogenica46361421478531691316046413444037269378225531074354158969311291788705405347501004115122548089365789260456134456746416041044295415442861832378748458375013091505678273656691854937910981941128405226381011764350941159021032190348270750284477602033416516420791633692723183666171027108092981950318625337044511251201880433769786250000000000000000000000000000000000000000000000000000000000000000000000000025991696931116892099311163727496208352024708115102102155760040185492115281836584512372749161310052165552891162920315297323105034471109076281738307728352137468659227722913271710954480321235931114654660555893254704243954217541377469314520381229322613981194371151577369114814071630722459266578239825803864516173412412171105957411431229117696107243394442145487037115675306014323910348018181158943514683477764566936609303328913941319267544696892123620616912352575072541812451338939646921049412424014346952358237067443612002441176311109219442923016965869406372102299119308852981388215508366154625286753937181109210616926488148251416542806197454643227731792343941831011303141019782171514072044831719933291133551435412772083873339405879783384730209114732206343210
SP63Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;veroralis2502000017038162102901572235287341263602802251400100205601827340414911329196323888415878758015717243323789431664700106811480141490016000016905820400000029246400114135200138000006357000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067433040000000000039710000051081000340000000015100002160590000630000000000001171760006459745871078000000016381021013083021460300000191803932603099413019011101900000000154003916401225930058002002500000092221400010940201011513110515000000146177990160377000000163900151000006500151350046110042113
SP64Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Haemophilus;parahaemolyticus000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000220717257230643221192535552046843422644015114323922127204713513016900174431110315705547032362202445283225120212237572904370170348985024481504200188126312137011318503848323103259903065187110190000000000000000000000000000000000
SP65Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Haemophilus;paraphrohaemolyticus142361397269000720166894097326820000000000163069272738100033502114603000750430601020100005881004426190010565852016780000000000000000000008600000038520100661000000002350000000000000000000000000000000000000000000000000000000000000000000000000000000000890000000000297000000010300000000000000065000000009501700000019371777600000000000000000000000000001790000000163002733119397045000006226000301618240070000000101800000000000033067000020233073000590000000000018029200000000038500068700000000000000000000
SP650Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Selenomonas;sp._oral_taxon_13612000423437000000023408071020300000000200014081000000090195041018030023159910313000181700001000201119218520035601222070030210076018618237161058390000000000000000000000000000000000000000000000000000000000000000000000000000050160000000000000000000000000000000000000333000600000000000081337214900000189143131706225195601200112200000151100000000000000000000000000000000000000001800000000370013003100003009701010495051059251339000000086032005200240000000220077020419247183000000200000000
SP654Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;pharyngis000000000000000000000002000000000074002000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196000013300001270047900000003751250011600000000000012200000001520000000000000000000000077900000130000000357320000000000000000000000000000000000000000000000000000000000000000000000000000000000000174000000000000000000000000000000000000
SP658Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;sp._oral_taxon_17500000000000000800000000000000000000284322600710000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000530000000000000000000000000000000000000000000000000037000000000000000000000000000000000003738000044118116033083061353200023412100044442102800192200069390031600000000000000017006717671001000855602200300000190001230000000000000000000000000000000000
SP659Bacteria;Actinobacteria;Actinobacteria;Propionibacteriales;Propionibacteriaceae;Propionibacterium;sp._oral_taxon_194000000000207270290490000100009000000006000120000000000050000000072001400011004700008002700030000000000000000077000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159111721815713886473524984910104149180124390158125194365459305143575188251270801121252123206712481349108175081847142153522700792722464480142535624863220304313233174410961055101117138153932180000000000000000000000000000480000
SP66Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;granulosa190140490904550141991523101711028026271637290006112000162533231334183408600300213252125233115329181158432363245895153143420055370041163221692677710376392779139235155850213816254071364809210000000000000000000000000000000000000000000000000000000000000000000000000000362330132238380777619700842550360281135454460594792697982550094009410407919512323716611980512232011496880153297267508688886113141205303008287509382124819018038817811631156849415700184348117121822012475665491797839373016201167639411085369202209132419045250654831249711223210605771702078301129707114981359976173851083814639986973611743147214824405512695369000943762051413521716712408243821153143178235763720881330148334620172423175150194324291106041786274100244017532139212540853648010452515514009593800144
SP670Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sp._oral_taxon_3800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000055000000000000000000000000000000000000000000000000000000000000000003200381465900272725511901842114120703253635815072130481710487045021012830680038520012600018002750150006501700027220854966011783015360590391400198180150000000000000000000000000000600000
SP675Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Aggregatibacter;sp._oral_taxon_89800000000104207300081107020000120108000230180375321570008100035000000191607400030002100700132414301421581328490000270000001600030470000000000000000000000000000000000000000000000000000000000000000000000000000038000043000000000260900400000000000000000000000000000000000000000000000002000000000000007000000025320000062340362725012317010000531600000717330000000220160762433800000001100030000078016031070000001700000000007000000000000000016000600000002100490
SP68Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Veillonella;parvula_group4451306342188928674594631810435945482646915567219824981735139464750326278837621130023675854247236071850810393213523606581782490280679727487707840112320742120061505867513130125289498656045073014223245609820771144409088821591931113100536293547946539371542232210563362218830818442455158452102253383247262417442743083627263612681065894108448942658007100000000000000000000000000000000000000000000000000000000000000000000000341910800571036276000276705510841135105155068410063123000183600026428046823703559410060000008000700087591569364138179139947277801551082703136611519286001773432946604938792120831872042325040931457489845529634720678163044713494110042659258028471278500126112373326657112713991043924320608144816512170638110466017072950542193880334934538148420741808823894941200345712876671871509553120414301580248444214616791576769206222441690839663260443625714874293861308723836454512687581900818105329617921333121117842227173626653735114294750962437610614866892303414626391727268312466826631293108189910872018571171415020122244394123104637323871
SP682Bacteria;Saccharibacteria_(TM7);TM7_[C-1];TM7_[O-1];TM7_[F-1];TM7_[G-1];sp._oral_taxon_347700000000300033500000000000000900000000000000000156210000000003028531300000545820000060000000000250144000019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122539013400055330030224114171606462001021510418915000000212503502401443406143193742348100012700002300031000000150000041021011210010015081500170019218721450209000000024099250326000000000250040000190000000000054708100350
SP684Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;bacilliformis000800000000003000002002000000000000000000000000130000000000000000000000000000008447005983222200000000000003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803000000260240001615775700115041117017130018020607578731115134571682010731181172917273101312041824247881071515227260271401981823203046544923540390002167003528710207136270792581294276492040165711815140150904224190252828000000000000000000000000000000000
SP69Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Aggregatibacter;sp._oral_taxon_45839109545162342528852152513353299591221361224723163899713825840463525132190157568132942202337341463099486835173088438240229152885692866620338034207711329961541461923491181456713330211425074076321059325032112136674178357110982180542735532015740135238531437000000000000000000000000000000000000000000000000000000000000000000000000004591024500214204364406272380761238210041526148618310903120115215343017440130736581092941183712911828464100060494930015332043832813795212200196390128000201212348111550536775074479928531310340005738452361028129196135600048132313096104750063753384050145257808046000573800002438029001311510000004900006000000011883101231256029110909702548000050487113269457680023227070189006363320159401454485191181456702158142501140
SP693Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Filifactor;alocis27181924000523177101441271120222930231281172602500174226432368441360688536393658509432817821821618011191616017741373125789215210120827669562558501142712914442712342755512554763905281953717910307019612106118109000000000000000000000000000000000000000000000000000000000000000000000000000140760022000026730371460000571011091140938110000280016585054800500000013503900036554014904401672511450118000000001487000131731807000002902111381341009623108631102118180429836315110686991382201033779286019353905300396818557677243337145314067123126617982107401391295266438808276114380149667021242917120241706135922325521547271290126240052890371892040901991210832801052162815929256576011887913
SP699Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;lecithinolyticum000000000123103030000060260000002635210400800000500054600043040020174150600000002460110360000004000641900150320110015000300000000000000000000000000000000000000000000000000000000000000000000000000008700002139000022000000000002285000050003263000749126000000071520020002700015152600000030470001042934001000000270013241402235001010123402819533904459047009941700077907600492601625704113325000002001983800380000052010425761095029031720000008600053069650038825000190016032011001500000000010248013731
SP7Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;baroniae218060080712610935009012039509500002710260620172013743132533231425156251004829177171702936345009066506171000070150131400191917111391200140000190012001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000002408500270001740002600000000026000000190000056622107100016106500161700000000000000000047000000095804629000128037014657450293336015400160000001733160576560142013980020001305507248003860015413254403549251058396430262806826000430567161764036100000000000000019001200250004711098008066
SP70Bacteria;Saccharibacteria_(TM7);TM7_[C-1];TM7_[O-1];TM7_[F-2];TM7_[G-5];sp._oral_taxon_3560000000000803010000000270400006000302540000000622814171724619913253713188205604422191650402150050050300200423242301810728600004468517000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000324241363004003301660413001021300403239814613921000230131471221794624013292548208252331858009411926378311527461633102727177091253823232322452612636664178752691804881060416029020040455683331080188100273148322033256148307193131701998095483322491891145005400023001072960000446847017500211015001410
SP708Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._oral_taxon_07400033100115100000000000000000000860000000000010000000001513000000000000000291030047933140001560000000000162800015505537104196744120291291551020000000000000000000000000000000000000000000000000000000000000000000000000002370159000309117804560000000571000000000000000510270000265033450900000000000000000216544048870710600371917454029624718910500423466046875350712961272012258800731000162714611287811651960188107281795386969593566853392237266622387493060106114773245530536151140182969019122878430900043507327101602670033638000383259567247622442350535002725463331662105737272514726216100174044128401581532603910919914812529131164469262281060476358043001210
SP71Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;salivarius00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002210015800000000000000000000000000000000000000000000000000000000260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374061260848039796440960615741274921375796518731356068895125020211232122034729894507554400001110148590880142530840519000250800203115027010400094522518035620232810296307232207402112610914301954300000000000000000000000000000000000
SP717Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;mutans00000000000000000000000000000100000000003000000000000000000070000000000000000000000000192290600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000010600000000027430000034360243311653003628140000000047237150029230025001607332401621111700281291300700924000170917133117178150201200000022000490065042212234941044234050000270120001160000000090000000000000000000000000
SP72Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_392210000001448261511613141716118511721270272001543002383021041012612284311929503723309875210212903003100118011923165050352629006508240531161530015930521310141270000004200140000000000000000000000000000000000000000000000000000000000000000000000000002365010010918170116702622852709922360001194192935590000188006500970016022403455073801460000000237012300370228169759200192836023048015200000000001052204100020320000667457520000791430069118086512190028014803912221023003700212537019129043230019394030000180001500034001268898991571350034002709600011026062150560000001440002700000000206030167035502900110
SP73Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;intermedius0600000001120011002300066152116519000072001600000000024009300000900000804242000014891614000004500287001906641833182800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006100037000000000000000000000000000010000009330000000000000000045000000019823200166351051210627702300098000179441623531632027147151033746830554022961619331136171119000131900123502202212543531050593016100353101461526614980005932119545801041000279000570131201301200490000000000000000000001489140000000
SP733Bacteria;Gracilibacteria_(GN02);GN02_[C-1];GN02_[O-1];GN02_[F-1];GN02_[G-1];sp._oral_taxon_87100000000000000000000000000000000000000000600000000000000000000000008000000000000000000000000000090070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000150061784896000000047380071300000000013000160457340150198295979540110160442133008985944827881341501205003101111014901600009000002401701800851310791933935750323000206316020400000000000000000090070000000000000
SP74Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;anginosus008150003002506103022000000000440000014270003200000000013234200127220002788027660005100000000290000000000000210003439230022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014800000000000000000115129146000002623353177334343247200030128988992150000031351561443501732211651122671931122655832144944153529274778063012010112410014606311122130109011413203116320490736995109743162610110374768819634717822126848860635022405127225483473020000000000371600220000017380000016029000
SP744Bacteria;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;delbrueckii00000001260738295133100030119000003000027200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP746Bacteria;Proteobacteria;Betaproteobacteria;Rhodocyclales;Rhodocyclaceae;Methyloversatilis;discipulorum2723107300004813124294135526267368078766267165155470810010000002300000000004202120157014182313752154322000000000000000030000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP75Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Alloprevotella;sp._oral_taxon_9120000150032901500605001580000000000000000002501822000801001513212000000000184387052000013000014000140190000000005001200000092000000000000000000000000000000000000000000000000000000000000000000000000000000000000000270000000004800300000016800039003300000003541700000000430000000000000000000000007000000000015000000156000021000000025000003900000001470000000040803200000000000001600120000001629000011000000000005500000070012000000005400050130000
SP751Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sp._oral_taxon_33500000000000000020340000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025013081250754025817104819037806781791875902437389029213115810064720551168016201900257600000013421011175180322340001306165304010401551085510914140000141310001510000000000000000000000000000000000
SP76Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Enterobacter;hormaechei0000000053611006441256140103390000001972923008016060202323727115600000692011680241003000370000000000011703014001315230800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004800000160202194051210831123245780710000000056000226701512512201800000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000010000000000000000000000000000000000000000000000000000000000000000000
SP768Bacteria;SR1;SR1_[C-1];SR1_[O-1];SR1_[F-1];SR1_[G-1];sp._oral_taxon_8752500018311110700011061301422085526002530039005000000017521114000003908003000560101111176232124400260100000014172195193415014172953340531730842013005100001767349000000000000000000000000000000000000000000000000000000000000000000000000000000043190171238272676037289112015550063015613669100179045000461176389452891912928210200000037110008423042204061861150000001215000031000000000000000001106103921487821002201846139364769268475213410247000177771857480227023012010000019007032009980188522601631402829708138051748655734258782500223650016336235848599723255330000010670053008490130051000080124400010000000
SP774Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;massiliensis000000000640000000000006600040010000000000130000000000019000000000130340001300000000003200000000210000000040606700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001720000000000000000000000000000000000000000160000000050032000000000000000000010065630313171662371320216494098934001242723172272822880200241602202803001319242536029017016132190580300670140010732153113110011957010220250002000901000000000240000000040700000000000000
SP776Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Kingella;oralis62013000005904071210040000020000023121902532800024524250167042402230122100121602012122000705204801741815114733416035346026304400080000541017025600000000000000000000000000000000000000000000000000000000000000000000000000000049388968390000016801132800214088048060042000000000000008402254280000400420000340085144940001712341415322225731831400262322521134461502201210212122944815529550768430032125511602044720410011445194251213993916378559357015143201837871880207306696873338405915300411017540143155814404274100450304671948276362125450422839510251140262032792527174100050430008000464101700000005200480200
SP777Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Peptostreptococcaceae_[XI][G-1];[Eubacterium]_infirmum0000000000000000000000000000000000000000000000000000000140100000000050000000612011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003600000000000000000004200000000000000000000000000231300000000702500000603406900000000183700031256128002215503100370015280000000392029034041671064311336240001600208005304127000006620561333302930078200001100195001051630190600000000000000000027000500000000
SP78Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_215930015250202280100240011370231400065003329100000210950023132600673956218931175010420551100140003500018578480179032395187006024002049221773735901315112716200230560281582002665644200000000000000000000000000000000000000000000000000000000000000000000000000007903412440163000118000580276062218314033538100043000470001701210443014000001022483827700620810157030162144404600087103001663800102147014416327345733104540181304937940923232325042270447427626712479819171223160616824661522349001183185152841940535248421195135440932907517972115283575286839363224511335169785111553601292856241376376638201482348023400166124209362202513675001411026621057615429584701958461124591705325134323900029324300005502916800026793200176039618800074940
SP79Bacteria;Saccharibacteria_(TM7);TM7_[C-1];TM7_[O-1];TM7_[F-1];TM7_[G-1];sp._oral_taxon_352109120215041175371014005413151333002956252018422915320411351731957034150551712694110018104182625512240121922016181792316743514836953044050801690177015332148681432601049713866272401293031649419535136358124171742220176000000000000000000000000000000000000000000000000000000000000000000000000005300015650182400000003530240140160000017000932271216002119452128650016000000450036004093324401432413606049640015331830151980002951640466569732306513263146612861885260664703938195512989627125466174144962062101938623610786346170420260861312358323731698134960325903054191002125626108100131836720253052053403304432069514441130131779271881212819741633011927881010100293135263102591672094018078749611101827017361840071448142024003061929421536139358124972242373423786400512131016901130
SP8Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Haemophilus;pittmaniae152512226123766446125243804101614254005004215410499618127340461529011492683687010252031444142409033085142290000750000034071100471700252343350134100310000003237710500000000000000000000000000000000000000000000000000000000000000000000000000192000001890002310000015700765601000004600000011110000000000000000070000000003370005063826022000137015000151643000000000362847019000100000000000000000000000000000000360000000000000000000000000000000000060000000000000000740014053001900049000000300000000000000
SP80Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Porphyromonas;sp._oral_taxon_278013178090513414112029751583958846840703491450130011084390013015335291816639118256254041378895242358273272200129174142020202021803603810200821016031026902441660986911217012969096106168000000000000000000000000000000000000000000000000000000000000000000000000000014200016200002870033279092350132000590000111415724430212790521302500000099078111791681105400111718000181480000005180000000000002700000003900005205100000050500002800170000000063000000000026600039000000000000003300000011900000000000302010300653170066007010817013070096403281002040228013360383260
SP802Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;sp._oral_taxon_01800000000100000000000000000000600010000001620070090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000025000000000000000000000000000000000000000000007096807110102310641034501061524700261432413004153901691401000003101233900093533808300008091000211261263260211606006050000113100000000000000000000000000000000000
SP809Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Oribacterium;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
SP82Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;scopos900000000000032500000000001160035155611000000000119048301813000000000000007001400033000900000004000001000050000312451800360000000000000000000000000000000000000000000000000000000000000000000000000000033000497138200007230006550001590319000000000000000000000000000540250110001090000000000003200592070121123000000000000000000161002003609490013000006802330000455000501860170000000900000012600000003660000350000002080000000043900050056000000260003222541231051000004417000320
SP83Bacteria;Firmicutes;Mollicutes;Mycoplasmatales;Mycoplasmataceae;Mycoplasma;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
SP833Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Burkholderiaceae_[G];sp._Oral_Taxon_D14000000000000000000000002100000000000000020000000000000000013000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002282761631031029134216111699301284110668394129524916262291825538171342887000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP836Bacteria;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;sp._Oral_Taxon_B99000000000000000000000009200000000000000000000000000000000008110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001500060000000000000000000000000000000000000000000000000000000000000000000000001297200000000000000000000000000
SP84Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;maculosa0000000063707022250076122930055000071014000101321622161113144210163020091432613025100462694525135410197600900501723130140280013183500591100006000038400000000000000000000000000000000000000000000000000000000000000000000000000000020000310000456045000910000541205600001800600410000350000010010101804000030410000044111073600000080046162700026000164438014001370780213033003226043020821901300410181915022200720351503253030000018100420320148901323407029055055690000001350169010000100080000000000000000000019500890007
SP849Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;sp._oral_taxon_49900000000000000000001400000000000000000000000000000000000000000000000000000000120000000000039000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000086080000000000000000000000000000000000000000000000000800000000000000000000262797222663176051020487161326601936006007904000015000000001702101202200000001300056600012121460150124136020264013000000146000025260000000039000000000000000000000000
SP85Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;maltophilum05000000000000000000000000000000000033000000000000031000000005400118001400029000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000028200000003900440340200270000000000011000340000040000000000503800039071400000000900000000001431552900000006421000074794306420320370000003001912000005500321702831110015000970001416024000151615025490480114700360013000460241820182619160000000000000000000048000140002900022
SP86Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;histicola1910211677168889000002821111723205221430315420039500110261601220045607434597424744639235453665690940216220816112120150004210074339032449430029000002800206425746135044243297000077156002589394104050346830000000000000000000000000000000000000000000000000000000000000000000000000000011951205950380294212704220058000065000032730002250013230007448829601940000315721217579301837000000150155002210023705142690000080911242411202361612393201957490004668115001561115558236412113239810321570942043210211581137414412503298093477481712667747573027641863132373275011601242190200242481071454418313321411381766202434010161367145510224935332765343736439904353873322718789240229739421522559500243611506434941475241311648193883018648304549000000000161002608991105090342340443000000002930
SP868Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Alcaligenaceae;Achromobacter;xylosoxidans00040030000200060000000000004180500020000027007000602014760883014782101711000000000000000000003370001119850000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009751242396013000091000000000000000000000000000000000000000800150044000000000000000000000000000000000000000000000000
SP87Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Bergeyella;sp._oral_taxon_90000000000000000000000000000000003000000000400004020000000000801821000000000000000020700000000000000000000130000000000000000000000000000000000000000000000000000000000000000000000000000000000000420000000000000000000083000000021000000000000280000008242320000715600324200000000000000000002217000002842002007605201070021330007300510130007800370710000000320033000000000036540301065410034001302600000000470000000000000000000000000000000000
SP872Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae;Romboutsia;sedimentorum180036244423000290590424105760554421231000000021241267210802041410071623017122262411784770914401437990010230006000000000000037800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP88Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Selenomonas;sp._oral_taxon_4780000003000000010002010010000000003000010000000013140000000000003409000300000000000000004156000900140110263000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000006000000000036535879000452902411051848195142800232003705707507126003101170015003200000340058000210030000018803470220580502300000026001220000000000000900140130293200000000000000
SP882Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._oral_taxon_056000000000000000000000000000000000000000000000000000000000002902150000015059000039458001840126230024000024000360000000000000000000000000000000000000000000000000000000000000000000000000000000000072790000000000000045000000000000310003400021000000066000000690000000000000000000000000000000001011142001700176211510606803615613053951120240690282376181070001162521001810136553742206065026251061171240004023260432202631051297942520684905617036000421490322556390000110116003020000520003409500000000930018
SP886Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;haemolytica0020000000000000000000000000000000000000000000000000000000012000036090000012000010004300001600000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000009600000000000000000000019270000000000004200014356000310160122000220672302326819128161516110105484401090000015495650151017310376000055012206001700951251480243800900000237831260001812000000160000000007000036000000005
SP90Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;denticola0000000000000000000000000000000000000000000000000000000000037925119654432813518070037052458260016127107024162137280300180023182133440000000000000000000000000000000000000000000000000000000000000000000000000051011510029418050360057262321621436513931258512037000248011071310425754431514601601334600033050247120380561253620960650415180000000073652300025220513913322713500802710391791004119561421822051573128611517170759818662186535157590352019106647140736743027678172027412908550718848632300011171334853720341127671861220122013874610320161403381369844213011510538051714211001621030030018002318223320442816607174003719254
SP905Bacteria;Proteobacteria;Epsilonproteobacteria;Campylobacterales;Helicobacteraceae;Helicobacter;equorum073961000000400740000000000612000000000900000000000027158122054014700254010031000000124000000050000031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002670000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP912Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_3760000000000000000004000002400000000000025000000050006900000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000003520000000000000000000125262820000000017005411002200090011110000130000219040210000040401360000000810012700385009581300141829351781118106600000032007601200120000000000000000000000000000000000
SP92Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._oral_taxon_06400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000062991966029800000000000131550002100000000000000000066000000700333625000018400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003437153433077782590040287365020630372102026046438431253715814600001264114264046840079013691480164154803410121040051302904503429300352466908168850230064112255559233740581002151018518370159145000000000000000000000000000000000
SP922Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Comamonadaceae;Comamonas;kerstersii0000142000008043016171100007000000000000000000000000000000000000000000000000000067560001398750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SP923Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus;lactis000000000000600001100600000000141404150410004000001384010400000000000000000910090070107000000600000102890677610325323030423354000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005200000000000000000000000000000000000000000000000001799933000500127000000000000000000380001900430000000000000000000000000000000000000000000000000000017000000000000000001070000010289067581032532303042335400091090007000
SP926Bacteria;Actinobacteria;Actinobacteria;Bifidobacteriales;Bifidobacteriaceae;Scardovia;wiggsiae000000000000000000000000500000000007000000000044000000000000058000000000000022200000040002800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100585225800030000000000000022360007611193501928180131400240120143601100041801021130452111546228772403811550414240617005080190550248755014011281006000302402160000000000000000000000000000000000017
SP93Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;medium000000000034000000000000036000089000061510390001328024213304108220019007034110131200000700000054316013190172007022000120000000357000000000000000000000000000000000000000000000000000000000000000000000000000000142000000013200285000440854700390000380064261542130000000000001640000000000000000000000000000000000332700000000000000040063000000000000000025360000000000000000000000000031800390000000000000000000000000008160000280001300001300800000019000053
SP94Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Klebsiella;pneumoniae00000002462078818786000880006005000000035048900041220000043291436000000068026214000000006200000000000000170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000380000000000000000000000000000000000000000000000000000000000007940301500003521854388121635083139592107823360114150225000000056170000006600000004500000000000325216643600310000410000414658026000000000000000000000000000000000031
SP944Bacteria;Firmicutes;Mollicutes;Mycoplasmatales;Mycoplasmataceae;Mycoplasma;salivarium0000000000000000000000000000000002000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000009002500000021026270000000000000000000000000000000000068000000000000000000008000000000353214000102228081613013013389640012156001000001704053055036340113160025113719124000325033161414653220159527159639961601638601600002400100000000000000000000000000000000000
SPN106Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_305_nov_93.671%000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003512467162206318168178311272111597113379109110145398552102971438099070465597486716669013762296162390432001493200710719361058329926124219901176013058542232165521276676861979095119138971199925313955694114210841655297734389000000000000000000000000000000000
SPN107Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;zoodegmatis_nov_94.197%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001230111215000215001330000000000000000000000001332341582872420013125600437001665029400000000001360402000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN117Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._str._2136FAA_nov_93.372%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013222500018882902381096568142000000000000000004420139000000000000000000000009480000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN121Bacteria;Proteobacteria;Betaproteobacteria;Methylophilales;Methylophilaceae;Methylotenera;mobilis_nov_91.803%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000683416146202454098173113175147423471371818074462566997312932702411555087848313923713135355216413912417154145324259128401558631233379424282951227157137243779184332329869175109298592124235812228284510395981027711057000000000000000000000000000000000
SPN129Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;troglodytidis_nov_93.750%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026412130101050000014446226700001870111017714900000000000000140271072500023000000000027500001230111002780000123012500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN141Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._oral_taxon_056_nov_94.304%000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008054564277341050000000001100008061869715198450000000000000000000000000000000000000000100000000000000116705866415955000000000000000000000000000000000
SPN152Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Bergeriella;denitrificans_nov_96.503%000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174341000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN16Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;granulosa_nov_97.674%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003120638910003211016405003942118031091279205015500014920000274420000267219625600000000005120300242402420369807314717405803957160000072000402920000000000000000000000000000000000
SPN163Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Caballeronia;humi_nov_92.456%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016000010900038200000000000192000000043613100000379131121117001490000000010109901270000000000115000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN17Bacteria;Actinobacteria;Actinobacteria;Micrococcales;Brevibacteriaceae;Brevibacterium;album_nov_89.231%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021495142712213878000690024930015600011425420215606647200393023400032300028300135111011470205108337133103368216488690157010417917000104035700120010900225015700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN175Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Alloprevotella;sp._oral_taxon_473_nov_97.468%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012191531000000902993101812100040418710103403907000012000550000006023828133000049419003430001083150352901712051302030070190008120000000000000000000000000000000000
SPN186Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Bergeyella;sp._oral_taxon_900_nov_97.579%00000000380500000000000000000000000000009503000000000000000006535132466261206001325700010168202300299000089020195001189000010000000000000000000000000000000000000000000000000000000000000000000000000000000029003391200843400370000001300270470320000000270000000003703843840381121040134003412200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002100091002000011890000002813001302590000
SPN198Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;gordonii_nov_93.385%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300732000000001523000977000000000000000000000000000000000000000000353000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN208Bacteria;Bacteroidetes;Bacteroidetes_[C-1];Bacteroidetes_[O-1];Bacteroidetes_[F-1];Bacteroidetes_[G-7];sp._oral_taxon_911_nov_87.414%000000000000000000000000000000000000000000000000424450523289279569630054800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN218Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;infantis_nov_97.792%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000296726662802316300108271647699314700528432107413936176514239155433067648173723800488284651766104310409201833300028006541030000144130112901151490655812652164621315014173523741133306400180002806349217680368000000000000000000000000000000000
SPN219Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Yersiniaceae;Serratia;liquefaciens_nov_86.973%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000033400017332200000000800000000000380000174000000269000000436000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN223Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;australis_nov_96.530%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016401690179027600067196217090674675198124372310332685535026002940493581313017051831461802241355200075001370006727500368468004055208359977157037001801600750110299210113280237000000000000000000000000000000000
SPN228Bacteria;Firmicutes;Bacilli;Bacillales;Planococcaceae;Ureibacillus;composti_nov_86.338%000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001460011200000003011360000000330278138000001440002800000000000000214209000036701030000478000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN238Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Bergeyella;zoohelcum_nov_91.720%000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025804523006118436531011392681091161305121832905065800390441400065310132210200380311500000030650002880254428019000850016528009001237209000000000000000000000000000000000
SPN245Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._oral_taxon_064_nov_97.468%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000270000858315415709460313006025000004500000000000000000000000000000008880000000350223000240000000059000078429000000000000000000000000000000000
SPN256Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;australis_nov_97.792%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019000001715803300000026003205615144490770164000000003600000000000137000244000691800000271719202350273098000206000028400192000000000000000000000000000000000
SPN26Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;meningitidis_nov_94.981%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001220701387000000224000000007020014400010300011400000000000189028400026800849176701940005250017100000002270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN266Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;zoodegmatis_nov_93.282%000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000493000042500001230000000000000000000000000000000000000000001341566000000000000387000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN278Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_215_nov_95.752%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223030000000000000002300000000000000000000000000042800000000000000000022015002000000000000212001350000000000000000000000000000000000
SPN298Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;sp._oral_taxon_927_nov_95.455%000300000022002300011100800900050070170400697046250244764400310033003011284004261364303400002800041124001600001000150000330000441240000000000000000000000000000000000000000000000000000000000000000000000000000170570000000000895601800009900350000000000000000000032008200015080000116010269900000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011700000000003300004468064300000028069
SPN309Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;gingivalis_nov_97.674%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214000000000012000000000162000000000000300000000040400000000000000000000000302622017000000000001800130000000000000000000000000000000000
SPN320Bacteria;Bacteroidetes;Flavobacteria;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sp._Oral_Taxon_F95_nov_97.690%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000588010630278603170109172313102538916984673139818729833066204993754234231195070621532115438875392003419500019841310002860111157400753416050530401154361841070098729388901146619230458225964432160007601232324536430000000000000000000000000000000000
SPN321Bacteria;Bacteroidetes;Flavobacteria;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;sp._Oral_Taxon_A48_nov_91.148%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000042007050191806132200151100720150021003406020035000000001179005900000000000000170144900000470001890110000260001000000000000000000000000000000000000
SPN331Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;wadei_nov_97.712%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125036000003033000216281240000002200150000000000308000000000033280000000260630001313804611123701890036000000290000170000000000000000000000000000000000
SPN333Bacteria;Saccharibacteria_(TM7);TM7_[C-1];TM7_[O-1];TM7_[F-1];TM7_[G-3];sp._oral_taxon_351_nov_97.701%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004514535210805856709046933326951119178118853237450015883185296023952760135165337000014600000230003740130000000362016558000194131032238002501238600000072030300322000000000000000000000000000000000
SPN341Bacteria;Proteobacteria;Epsilonproteobacteria;Campylobacterales;Campylobacteraceae;Campylobacter;concisus_nov_97.087%000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015302400000047240160270009256021900112000200063400100000000190270851970000000902100000000060000004880009780072062160000000000000000000000000000000000
SPN351Bacteria;Bacteroidetes;Bacteroidetes_[C-1];Bacteroidetes_[O-1];Bacteroidetes_[F-1];Bacteroidetes_[G-7];sp._oral_taxon_911_nov_85.261%34000000000700000014000000000000000000000000000000012000460000005910000004980000000020700144201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN371Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Veillonella;sp._oral_taxon_780_nov_90.366%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013500000148690016700000000000000000000000000015000018700002644240690000050502140011000000000000130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN381Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._str._2136FAA_nov_92.788%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN40Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;sp._oral_taxon_396_nov_97.579%000028037000000000000000008996001300110310009071800000000192300000000008500201701000000800103077900400000014000146079050004900000000000000000000000000000000000000000000000000000000000000000000000000097072351219881271592021830008200000708601390792919100004163241850065015892680777300211190001228612221700023178000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000802452120000000015107605100002017000000000
SPN402Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Alcaligenaceae;Pusillimonas;noertemannii_nov_86.973%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112000011600000000000000000000000000001430000010318630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN406Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Erwinia;sp._str._Ejp617_nov_94.615%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018300477001020005720000000000000000000282000107000000000000000000000000000005480000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN407Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Alloprevotella;sp._oral_taxon_473_nov_97.792%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102139122227840006249600391122180185211267000211180006835007780222641019179714630000002190164933707210000020391104010000002521000591968078155800733001280329058333145229300000000000000000000000000000000000
SPN408Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;viscosus_nov_96.756%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002880000000000000000000002490000000000128900000000000000000001270000275000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN409Bacteria;Proteobacteria;Gammaproteobacteria;Orbales;Orbaceae;Gilliamella;apicola_nov_94.796%00000000000000000000000000000094900700000000012460170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN410Bacteria;Firmicutes;Bacilli;Lactobacillales;Carnobacteriaceae;Granulicatella;elegans_nov_95.938%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013400000000028700126000108011700001290000000000000000000000171000042018001640203000001941140001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN411Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Alloprevotella;rava_nov_88.729%000940000000000000000000000000000000160000000000008700310220002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012100510000000000000000840011749000011760000000000530045000024000565000031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN418Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Yersiniaceae;Serratia;liquefaciens_nov_87.140%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006961536349389480129501224001102510014400185023171072100141001650018319300117162019530117399023270192152826175545124242264013319792330111226931213347664012430020202611400346016100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN437Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._str._2136FAA_nov_93.474%000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156800000000229332001620547105292145800000239246070117000011380698600000000025900017100000005280013302964670044001363440055310900103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN442Bacteria;Proteobacteria;Gammaproteobacteria;Alteromonadales;Pseudoalteromonadaceae;Pseudoalteromonas;xiamenensis_nov_85.549%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113304271519606013100086528716100031500268333000065300000159000104700000186019202370347559000020201240001588072072700212269289000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN457Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._str._2136FAA_nov_93.372%000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004472440366198000068600000000599049300020800007425631643027500140145000107460526312900013404221430001660012201040000001590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN477Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._Oral_Taxon_B59_nov_93.103%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001500128000019119930104000055400000012401270031111901066217115002963041701010136001091018017000000000000267170000001060000001120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN487Bacteria;Actinobacteria;Actinobacteria;Micrococcales;Micrococcaceae;Renibacterium;salmoninarum_nov_89.382%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017100222400007710300000001230000141501930013700036200000011308290122000000000010150160021600014980000088000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN52Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;troglodytidis_nov_93.580%000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007935940000000053204390053700530223627001110000000001740000018500000000000010900000820003390000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN62Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;sp._str._2136FAA_nov_93.881%000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026600000000000000760344300000000137600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPN7Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;sp._oral_taxon_215_nov_96.078%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000064016717981092115813765614010331821803143172115754267981207231460322048344926127228219242800032220247801663626121419129303708701503910002352149318606984711361021138812296242200986621049834571514480862180389171432902899431445491531000000000000000000000000000000000
SPN74Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;gingivalis_nov_96.053%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031036282291310020014810222460325785940961602264332400148240311575904901000000151581021206302000012000640171000105562011941800540002000000049300112135120000000000000000000000000000000000
SPN84Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;sp._oral_taxon_018_nov_97.852%0000000001500001000000002200000084000120000000152600000000000000000032034133013390371310060570664431000133319100037842000401600370013000000000000000000000000000000000000000000000000000000000000000000000000000000000172000147000000000001650000133055000630000000000000240128027027600011980000000000002853800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102442000400003700013401303701280000
SPN91Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Bergeyella;sp._oral_taxon_900_nov_93.563%1927205025043012131704797489008412384561445112712561211750305042427101100000110284503530846194510496200091290954133301010009300084144120573954421643411894211711303100121112400000003626114400000000000000000000000000000000000000000000000000000000000000000000000000014818150000062900114026001600001401240004008230160000360000000000000000930000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120060000001122400000003600101400003745064147130
SPN95Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Alcaligenaceae;Pusillimonas;noertemannii_nov_88.100%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001820110034600000117323000000082702380000000000000000001192000010401346401220104023119900002540374000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPP118Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;multispecies_spp118_200001000076419210002407280000000025000000006700000001900010000000000000000760474500000000000000000000056500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007100001490000000000000000000000000000000000000000000000000000000000000000067000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000058600000000000000300000000000
SPP124Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;multispecies_spp124_200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000220098640000031562706517202436000000000378036500003190000015000654071081035000000000005127360043032000002180340770172310670000000000000000000000000000000000
SPP128Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Haemophilus;multispecies_spp128_300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000565222878618041604991948047812070151023913211400020211469000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPP136Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;multispecies_spp136_2000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000262010853481023984999606769350197522156401709781146270186910781072522645755450070175017680280001080610003011090008701520187824656104571556400000014603900470401128000000000000000000000000000000000
SPP138Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;multispecies_spp138_257200159600620000014026350271400173400000770003200000000000000002572600000180033002832022000002800240968000000000260774001900000910029420000000000000000000000000000000000000000000000000000000000000000000000000000003013419210108866700002175962106045604244417339834100000000130319939742013904040009900588137530000071116328000000000003533000002700020614100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000630008300170000010600045290000000000
SPP150Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;multispecies_spp150_2000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009990024457000004629714378130001364130311057000054400000000000095000091333271540100101007430243720113000110212910083008020000000000000460000000000000000000000000000000000
SPP156Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;multispecies_spp156_200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130216002388000177091430144003305935100250000582746002503804611500025073270000004906100534036656483000000400200169044000000000000000000000000000000000
SPP161Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Veillonella;multispecies_spp161_20000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000056011320817797590131693319508573151012250517390562565916001460239250126021612640307048207204923001500081194018100034579011504050179022856136633229716673921648205155771610178000302548630072000000000000000000000000000000000
SPP168Bacteria;Actinobacteria;Actinobacteria;Actinomycetales;Actinomycetaceae;Actinomyces;multispecies_spp168_2250014700000000000000000000000000290065000000220000000360000000002700000000000000000000004700000000000000000005200000000000000000000000000000000000000000000000000000000000000000000000000103000000550000000000137000002560000116000000000000074713550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033000000000060
SPP177Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Neisseria;multispecies_spp177_3244284229892102020313073781822317178025220183318114934271163525922606189652078131314841743154634900801548982089617033067576602414656377393756108869373724623526528433910962877917228171829374726037863249841110181992334889351209420431419172566283702926404442508892933215907764747931223945236115576785183333480477513217765042969081969244600000000000000000000000000000000000000000000000000000000000000000000000000025403744500018482330004115480108033816117318330012323701533146325210190137928912550001231656148008340001256494041802911641630583111485821398054450357001870824200047493474470901406339304122928957514281072520018736874798514872098800000000000000000000000000000000000000000000000000000000000000000000000000000000000000084200298124750223361566051933835024805152179810418693814201964909504004221651435165568710770
SPP189Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Aggregatibacter;multispecies_spp189_2000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000820000000000000000000000000000000000000000000119178024043931091530061700109543628004710536730003826000002301600000306538013000200002900036008503318413500860043044000003240000000000000000000000000000000000000
SPP197Bacteria;Firmicutes;Clostridia;Clostridiales;Peptoniphilaceae;Parvimonas;multispecies_spp197_2070274946279000140180022000251310400064001524000012002500024260043372700000000000002966517216681727980002310033313926185927039341443413015101070753787000076112000000000000000000000000000000000000000000000000000000000000000000000000005314000002617210054350652430011314001920130732540821153145007105484324001111380000048014247000108296056000024026000002449003003060065480000000025000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060544401300010908138710000001672178103800245045
SPP199Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Oribacterium;multispecies_spp199_20000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000390132101005500004300009213400061000350000161510129000000053537401070000000000000074018503620002060770583400000255660980710000000000000000000000000000000000
SPP214Bacteria;Firmicutes;Clostridia;Clostridiales;Peptostreptococcaceae_[XI];Mogibacterium;multispecies_spp214_3210000040000003900000008060000000000500040000002200640000000000100131700008000497000890000121100505201070000183700000000000000000000000000000000000000000000000000000000000000000000000000004614934438204374801450117011145001051373452510103295400029000104524898563104621532511424473030001110001540161771581474556000000000400000770000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002100790000610118000000911700081300050
SPP225Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Aggregatibacter;multispecies_spp225_27834373020528293436674097409145298781353512222863336263264461271171149022307528553461253149862414610614486059031416583269676791657719240012519031854566294651713082971933340243011615312535015733821647862821854544240388131913601401581192417994201418477736502000000000000000000000000000000000000000000000000000000000000000000000000000152084960623758003735520518873915471933129527340873020914842973122084202701799742349895156221615800560223177954611124207144280426822450007014657553932500000192734070511041459836539015211013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001562871503200571232517994601419078640933340011872174128353010
SPP231Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Kingella;multispecies_spp231_201900000131383150000000000000000008000002150000022000000002309061000000100000023903500137210001213000001247200000000000004900000000000000000000000000000000000000000000000000000000000000000000000000000000000003177000000000016513300000000000000000380087000001162170001530066200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137000000040800000000000000004960035000
SPP239Bacteria;Proteobacteria;Epsilonproteobacteria;Campylobacterales;Campylobacteraceae;Campylobacter;multispecies_spp239_239313938643294032719098154004237810844312527277981095003573425213601618301381144640664642152543444822644273806824803117247203112424391542735379681822553181452287324626575031538129214487915523243183537025601432633229255000000000000000000000000000000000000000000000000000000000000000000000000001053741022061229728981551529755215632538135126266321491185109355144273677171231089523380128603372842832198112131481372100003027964832635028589492775093072670909112456906910178362216317182939304131550871195203183119191015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000028560861600552551835510256014326331050371138125539018245269221
SPP243Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Bacteroidaceae;Bacteroides;multispecies_spp243_251531020300012000300000000000001311053001463009244153103142462122317270791000080212030000000000000000000571466200013001800000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPP244Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Veillonella;multispecies_spp244_20000000000000000000000001100000000000000000000000009700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031690248136774245845144783244080444105729523351365912986830562843108294452180555009446971433110865029311303786501122352651007716210294168547136912750015824209458510206395193443144793145168032322426505331181050873006351620973000000000000000000000000000000000
SPP247Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;multispecies_spp247_200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000180038655135049638775412744087111571849280072000000503303300000025011468000000000000027035007405648049011157000000120003012306118000000000000000000000000000000000
SPP254Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;multispecies_spp254_2259913514363316128286810642121031269250280324629471610228259027160761272501453542464341820054162354301487842231593143797077992836135322901936668842437253702348385220100214113428610631526920011410414487205531059197532910919618439302143104506808939500000000007700000000000000000000000000000000000000000000000000000000000020308111477120991322081312817324468507076157354950177513343775603437426753386205002034191813832453031158910010016273897396412970621000358115778607101101174821648671458474510694977149223181358189636203364717173422088313317610237768428027216121750401378414111457130429481065981030159789571129702060162536316345473787138910606878171020240018393421257007421046114393619936797531995201044911353142421651036115928713511823971091381977242708145852143612602459481262383142602223516829317675395547373945234643629632464712138723993114018679829811757341153242001356342190660001391531002035629108196184422981441004793702738522820800160
SPP266Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Leptotrichiaceae;Leptotrichia;multispecies_spp266_234830065105000160170753017105226016510280053529426130401002941220104000110018000362534001202500673601406111201650623160003800461062996102934414127151035098183211660009600000960000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002381900011202514600091000000016303160610050290
SPP277Bacteria;Firmicutes;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus;multispecies_spp277_3761015250000049001304023000004000000014028016000000000000369224135215742546732807571161310190000002400000001810000046601100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SPP278Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Haemophilus;multispecies_spp278_226710037181517421320140728744966436038823523349891399301130531736725851304050861774313732432014540156632072560709111066643157189111215140624074769540361669744337281037416783690829148316739561397542737130141072910571420350151308613142494641464003889158247132393190671007594230148035517614211050000000000000000000000000000000000000000000000000000000000000000000000000008221000200000450381875003711501850132000007185600000190000263500217011034500108001446069006304513020023116586088872832472144503771801413151472232233383775762537535403400023313455392382000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015100366210404199110076369301480362192003962807291076100143036667769
SPP44Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium;multispecies_spp44_216220000270201443500114222405001080152204030001032139312103025851149152219181916318092175408151990512800748514440524990000000002024015236238586365182362928610002400054079240000000000000000000000000000000000000000000000000000000000000000000000000000132000000000149000000100227000000000000000000008181000000070000600000029280000000543441069000000164000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000250580630000000420004057523000000413
SPP46Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium;multispecies_spp46_200000000000000000000000000000000000000000000000000000000000000000000000000000000000005200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318428440000000026841321500000000260000006500041802940380000000064000027000001760013706426010801240013705200380793328006910283399901747302736000000000000000000000000000000000000000000000
SPP5Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Prevotellaceae;Prevotella;multispecies_spp5_240003000003000810820007040000000000917200060000001195599210100000082105115334250000000112300378109722256424280100000004011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000055000000320000000000080000000000000000680000000000000000000000010000000000000000012270000011950000040000001753000001000440000000000086000030644218000000000007308760201000001410000041000000001100113243201000000090005514600000000
SPP54Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Porphyromonas;multispecies_spp54_20080561402011200090415004015829445120130060180019320292600000044353714340000110000000000312501510600000100320900000000353240617222014100000631270970000000000000000000000000000000000000000000000000000000000000000000000000000470000011000012500032100000020098053000300160000531300002800017091046000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000330085001662730014300000193135002011400076010000
SPP55Bacteria;Bacteroidetes;Bacteroidia;Bacteroidales;Porphyromonadaceae;Porphyromonas;multispecies_spp55_3000086000000033036340569705938565501911000330000000025032172128032000000000003100447227038454075001400120610079006200001717028000000011100037000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000275139012000450000240000002700201162021126840024000631632500140000380030190000000000000000001900001211230000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000017000000000010201103846200002200270
SPP6Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;multispecies_spp6_1200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168008209623915203371011011716515301551561209018344401440016286131001080
SPP64Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;multispecies_spp64_2367874739100039000000000000004107190000000037401430000000000130027563142000000071044067011000571322050049002046200000001512288800185001742263022782400000000000000000000000000000000000000000000000000000000000000000000000000000267013344002071092160941040016609500610436142000000000000112152000000698320000000000010200090918936917638609720500121167321860455373106148607371030508290449614752155377255000000000000000000000000000000000000000000000000000000000000000000000000000000000000000420170000339870291850017500304279240332350005513901750000
SPP65Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;multispecies_spp65_200000000000000000000000000000000000000000000000000000000000000006930400314154001200000000000000084768093121524499209685500000000000000000000000000000000000000000000000000000000000000000000000000001680430243687122359027653201835212040266036965105317470216281012517811024800560373186001279443272725514647724793354071880022722029735000388015127871806312940012211000939102707469372073430161602000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200013201341430044878410111862551032087557471225673040316505900410
SPP7Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;multispecies_spp7_11456731972150195252149014243019949418073133312160269271351555877645464177562231189610527279656849180532972115711316171239964253085691238573231824250849815850410294739395840614296225442255416962198992616511339256071154538907455139753109734410469626675267187140647521181723686316487894814316553678794516368645573230711585665891616377187147051105415449303241888799193693490761641527070398611265967558185134111161320866284868371577675484396297110840000000000000000000000000000000000000000000000000000000000000000000000000015466331275927034623116240342646239314741834393016234702215516816452200933523468258310935420255624799316711045772179990449719131164133138254424133426013784280323553661204957873522121194718323484203029761293186232992648287025042616309838811213312594626993549543115147499524133270122301476832591158626053207302075217496652213227626668330781405819446508204270922311676125224835038542280000000000000000000000000000000000000000000000000000000000000000000000000000000000000008863647668575267429228835115399711292109005866509911154132786988526911158468018461413966233222540087996900555811835232711587677810151822
SPP8Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;multispecies_spp8_2000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001333124420398172015513302172860164124262941292251661758932607409290127130010202539450052437313000011829655176008257134235318000344402461377140311701681131012620241138286011710131306544016234015615265333000000000000000000000000000000000
SPP80Bacteria;Firmicutes;Clostridia;Clostridiales;Lachnospiraceae_[XIV];Catonella;multispecies_spp80_20100000010119200601180900838596000031021160231708634221101754151861632400913212293006103474471147633282035004128100191536780130310005026167340004800000006388000000000000000000000000000000000000000000000000000000000000000000000000000013700000000000099000000000500000330000450000000000009811132001280850237551630175232000130003577800000055372741321671692305200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200862700074000490000000250360210004101073617
SPPN2Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;multispecies_sppn2_2_nov_97.778%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000073311331064004591014600184351200151000001240821280000069605900001810073768400000178000000000000116413150012501201782052000046660000000000000000000000000000000000000000
SPPN49Bacteria;Bacteroidetes;Flavobacteriia;Flavobacteriales;Flavobacteriaceae;Capnocytophaga;multispecies_sppn49_2_nov_96.368%000000000600040000000400000000000000000170000000000000000000001921022002301280701200095437300322000030000000001801882000000000000000000000000000000000000000000000000000000000000000000000000000000000201000392011700000860021503400423203100520167120017280000000017290128790640001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000370000160002000462300012080700
SPPN55Bacteria;Firmicutes;Clostridia;Clostridiales;Peptoniphilaceae;Parvimonas;multispecies_sppn55_2_nov_96.273%0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010191423903376188000052034823839976497144055400004563028263129194112370000082013900037122117260239012410021300184200553000795774396932483558008248000696025681709173756939415000000000000000000000000000000000
SPPN60Bacteria;Firmicutes;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus;multispecies_sppn60_2_nov_91.013%00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017832464250018160026505420197044004280000000005900000002690005890009530000000049000000111900267002570122258026303270187000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
 
 
Download OTU Tables at Different Taxonomy Levels
PhylumCount*: Relative**: CLR***:
ClassCount*: Relative**: CLR***:
OrderCount*: Relative**: CLR***:
FamilyCount*: Relative**: CLR***:
GenusCount*: Relative**: CLR***:
SpeciesCount*: Relative**: CLR***:
* Read count
** Relative abundance (count/total sample count)
*** Centered log ratio transformed abundance
;
 
The species listed in the table has full taxonomy and a dynamically assigned species ID specific to this report. When some reads match with the reference sequences of more than one species equally (i.e., same percent identiy and alignmnet coverage), they can't be assigned to a particular species. Instead, they are assigned to multiple species with the species notaton "s__multispecies_spp2_2". In this notation, spp2 is the dynamic ID assigned to these reads that hit multiple sequences and the "_2" at the end of the notation means there are two species in the spp2.

You can look up which species are included in the multi-species assignment, in this table below:
 
 
 
 
Another type of notation is "s__multispecies_sppn2_2", in which the "n" in the sppn2 means it's a potential novel species because all the reads in this species have < 98% idenity to any of the reference sequences. They were grouped together based on de novo OTU clustering at 98% identity cutoff. And then a representative sequence was chosed to BLASTN search against the reference database to find the closest match (but will still be < 98%). This representative sequence also matched equally to more than one species, hence the "spp" was given in the label.
 
 

Taxonomy Bar Plots for All Samples

 
 

Taxonomy Bar Plots for Individual Comparison Groups

 
 
Comparison No.Comparison NameFamiliesGeneraSpecies
Comparison 1Control_Mucosa vs OLP_MucosaPDFSVGPDFSVGPDFSVG
Comparison 2Control_Saliva vs OLP_SalivaPDFSVGPDFSVGPDFSVG
Comparison 3Control_Mucosa vs OLP_Mucosa vs Unknown_Mucosa vs Unaffected_MucosaPDFSVGPDFSVGPDFSVG
Comparison 4Control_Saliva vs OLP_Saliva vs Unknown_SalivaPDFSVGPDFSVGPDFSVG
Comparison 5Control vs OLP vs Unaffected vs UnknownPDFSVGPDFSVGPDFSVG
Comparison 6Control vs OLPPDFSVGPDFSVGPDFSVG
Comparison 7China vs South Korea vs SwedenPDFSVGPDFSVGPDFSVG
Comparison 8PRJNA266382 vs PRJNA295501 vs PRJNA1043432 vs PRJNA756771 vs PRJNA598825 vs PRJNA556311 vs PRJEB73312 vs PRJNA1049117PDFSVGPDFSVGPDFSVG
 
 

VIII. Analysis - Alpha Diversity

 

In ecology, alpha diversity (α-diversity) is the mean species diversity in sites or habitats at a local scale. The term was introduced by R. H. Whittaker[5][6] together with the terms beta diversity (β-diversity) and gamma diversity (γ-diversity). Whittaker's idea was that the total species diversity in a landscape (gamma diversity) is determined by two different things, the mean species diversity in sites or habitats at a more local scale (alpha diversity) and the differentiation among those habitats (beta diversity).

 

References:

  1. Whittaker, R. H. (1960) Vegetation of the Siskiyou Mountains, Oregon and California. Ecological Monographs, 30, 279–338. doi:10.2307/1943563
  2. Whittaker, R. H. (1972). Evolution and Measurement of Species Diversity. Taxon, 21, 213-251. doi:10.2307/1218190

 

Alpha Diversity Analysis by Rarefaction

Diversity measures are affected by the sampling depth. Rarefaction is a technique to assess species richness from the results of sampling. Rarefaction allows the calculation of species richness for a given number of individual samples, based on the construction of so-called rarefaction curves. This curve is a plot of the number of species as a function of the number of samples. Rarefaction curves generally grow rapidly at first, as the most common species are found, but the curves plateau as only the rarest species remain to be sampled [7].


References:

  1. Willis AD. Rarefaction, Alpha Diversity, and Statistics. Front Microbiol. 2019 Oct 23;10:2407. doi: 10.3389/fmicb.2019.02407. PMID: 31708888; PMCID: PMC6819366.

 
 
 

Boxplot of Alpha-diversity Indices

The two main factors taken into account when measuring diversity are richness and evenness. Richness is a measure of the number of different kinds of organisms present in a particular area. Evenness compares the similarity of the population size of each of the species present. There are many different ways to measure the richness and evenness. These measurements are called "estimators" or "indices". Below is a diversity of 3 commonly used indices showing the values for all the samples (dots) and in groups (boxes) at the species level.

Printed on each graph is the statistical significance p values of the difference between the groups. The significance is calculated using either Kruskal-Wallis test or the Wilcoxon rank sum test, both are non-parametric methods (since microbiome read count data are considered non-normally distributed) for testing whether samples originate from the same distribution (i.e., no difference between groups). The Kruskal-Wallis test is used to compare three or more independent groups to determine if there are statistically significant differences between their medians. The Wilcoxon Rank Sum test, also known as the Mann-Whitney U test, is used to compare two independent groups to determine if there is a significant difference between their distributions.
The p-value is shown on the top of each graph. A p-value < 0.05 is considered statistically significant between/among the test groups.

 
Alpha Diversity Box Plots for All Groups - Species Level
 
 
 
 
 
 
 
 
 
Alpha Diversity Box Plots for Individual Comparisons at Species level
 
Comparison 1Control_Mucosa vs OLP_MucosaView in PDFView in SVG
Comparison 2Control_Saliva vs OLP_SalivaView in PDFView in SVG
Comparison 3Control_Mucosa vs OLP_Mucosa vs Unknown_Mucosa vs Unaffected_MucosaView in PDFView in SVG
Comparison 4Control_Saliva vs OLP_Saliva vs Unknown_SalivaView in PDFView in SVG
Comparison 5Control vs OLP vs Unaffected vs UnknownView in PDFView in SVG
Comparison 6Control vs OLPView in PDFView in SVG
Comparison 7China vs South Korea vs SwedenView in PDFView in SVG
Comparison 8PRJNA266382 vs PRJNA295501 vs PRJNA1043432 vs PRJNA756771 vs PRJNA598825 vs PRJNA556311 vs PRJEB73312 vs PRJNA1049117View in PDFView in SVG
 
The above comparisons are at the species-level. Comparisons of other taxonomy levels, from phylum to genus, are also available:
 
 
 

IX. Analysis - Beta Diversity

 

NMDS and PCoA Plots

Beta diversity compares the similarity (or dissimilarity) of microbial profiles between different groups of samples. There are many different similarity/dissimilarity metrics [8]. In general, they can be quantitative (using sequence abundance, e.g., Bray-Curtis or weighted UniFrac) or binary (considering only presence-absence of sequences, e.g., binary Jaccard or unweighted UniFrac). They can be even based on phylogeny (e.g., UniFrac metrics) or not (non-UniFrac metrics, such as Bray-Curtis, etc.).

For microbiome studies, species profiles of samples can be compared with the Bray-Curtis dissimilarity, which is based on the count data type. The pair-wise Bray-Curtis dissimilarity matrix of all samples can then be subject to either multi-dimensional scaling (MDS, also known as PCoA) or non-metric MDS (NMDS).

MDS/PCoA is a scaling or ordination method that starts with a matrix of similarities or dissimilarities between a set of samples and aims to produce a low-dimensional graphical plot of the data in such a way that distances between points in the plot are close to original dissimilarities.

NMDS is similar to MDS, however it does not use the dissimilarities data, instead it converts them into the ranks and use these ranks in the calculation.

References:

  1. Plantinga, AM, Wu, MC (2021). Beta Diversity and Distance-Based Analysis of Microbiome Data. In: Datta, S., Guha, S. (eds) Statistical Analysis of Microbiome Data. Frontiers in Probability and the Statistical Sciences. Springer, Cham. https://doi.org/10.1007/978-3-030-73351-3_5

In our beta diversity analysis, Bray-Curtis dissimilarity matrix was first calculated and then plotted by the PCoA and NMDS separately. Below are beta diveristy results for all groups together, at the Species level:

 
 
NMDS and PCoA Plots for All Groups - Species Level
 
 
 
 
 

The above PCoA and NMDS plots are based on count data. The count data can also be transformed into centered log ratio (CLR) for each species. The CLR data is no longer count data and cannot be used in Bray-Curtis dissimilarity calculation. Instead CLR can be compared with Euclidean distances. When CLR data are compared by Euclidean distance, the distance is also called Aitchison distance.

Below are the NMDS and PCoA plots of the Aitchison distances of the samples at the Species level:

 
 
 
 
 
 
 
NMDS and PCoA Plots for Individual Comparisons at Species level
 
 
Comparison No.Comparison NameNMDAPCoA
Bray-CurtisCLR EuclideanBray-CurtisCLR Euclidean
Comparison 1Control_Mucosa vs OLP_MucosaPDFSVGPDFSVGPDFSVGPDFSVG
Comparison 2Control_Saliva vs OLP_SalivaPDFSVGPDFSVGPDFSVGPDFSVG
Comparison 3Control_Mucosa vs OLP_Mucosa vs Unknown_Mucosa vs Unaffected_MucosaPDFSVGPDFSVGPDFSVGPDFSVG
Comparison 4Control_Saliva vs OLP_Saliva vs Unknown_SalivaPDFSVGPDFSVGPDFSVGPDFSVG
Comparison 5Control vs OLP vs Unaffected vs UnknownPDFSVGPDFSVGPDFSVGPDFSVG
Comparison 6Control vs OLPPDFSVGPDFSVGPDFSVGPDFSVG
Comparison 7China vs South Korea vs SwedenPDFSVGPDFSVGPDFSVGPDFSVG
Comparison 8PRJNA266382 vs PRJNA295501 vs PRJNA1043432 vs PRJNA756771 vs PRJNA598825 vs PRJNA556311 vs PRJEB73312 vs PRJNA1049117PDFSVGPDFSVGPDFSVGPDFSVG
 
 
 
 
 
 

Interactive 3D PCoA Plots - Bray-Curtis Dissimilarity

 
 
 

Interactive 3D PCoA Plots - Euclidean Distance

 
 
 

Interactive 3D PCoA Plots - Correlation Coefficients

 
 
 

X. Analysis - Differential Abundance

16S rRNA next generation sequencing (NGS) generates a fixed number of reads that reflect the proportion of different species in a sample, i.e., the relative abundance of species, instead of the absolute abundance. In Mathematics, measurements involving probabilities, proportions, percentages, and ppm can all be thought of as compositional data. This makes the microbiome read count data “compositional” (Gloor et al, 2017). In general, compositional data represent parts of a whole which only carry relative information [9].

The problem of microbiome data being compositional arises when comparing two groups of samples for identifying “differentially abundant” species. A species with the same absolute abundance between two conditions, its relative abundances in the two conditions (e.g., percent abundance) can become different if the relative abundance of other species change greatly. This problem can lead to incorrect conclusion in terms of differential abundance for microbial species in the samples.

When studying differential abundance (DA), the current better approach is to transform the read count data into log ratio data. The ratios are calculated between read counts of all species in a sample to a “reference” count (e.g., mean read count of the sample). The log ratio data allow the detection of DA species without being affected by percentage bias mentioned above

In this report, a compositional DA analysis tool “ANCOM” (analysis of composition of microbiomes) was used [10]. ANCOM transforms the count data into log-ratios and thus is more suitable for comparing the composition of microbiomes in two or more populations. "ANCOM" generates a table of features with W-statistics and whether the null hypothesis is rejected. The “W” is the W-statistic, or number of features that a single feature is tested to be significantly different against. Hence the higher the "W" the more statistical sifgnificant that a feature/species is differentially abundant.

References:

  1. Gloor GB, Macklaim JM, Pawlowsky-Glahn V, Egozcue JJ. Microbiome Datasets Are Compositional: And This Is Not Optional. Front Microbiol. 2017 Nov 15;8:2224. doi: 10.3389/fmicb.2017.02224. PMID: 29187837; PMCID: PMC5695134.
  2. Mandal S, Van Treuren W, White RA, Eggesbø M, Knight R, Peddada SD. Analysis of composition of microbiomes: a novel method for studying microbial composition. Microb Ecol Health Dis. 2015 May 29;26:27663. doi: 10.3402/mehd.v26.27663. PMID: 26028277; PMCID: PMC4450248.
 
 

ANCOM Differential Abundance Analysis

 
ANCOM Results for Individual Comparisons
Comparison No.Comparison Name
Comparison 1.Control_Mucosa vs OLP_Mucosa
Comparison 2.Control_Saliva vs OLP_Saliva
Comparison 3.Control_Mucosa vs OLP_Mucosa vs Unknown_Mucosa vs Unaffected_Mucosa
Comparison 4.Control_Saliva vs OLP_Saliva vs Unknown_Saliva
Comparison 5.Control vs OLP vs Unaffected vs Unknown
Comparison 6.Control vs OLP
Comparison 7.China vs South Korea vs Sweden
Comparison 8.PRJNA266382 vs PRJNA295501 vs PRJNA1043432 vs PRJNA756771 vs PRJNA598825 vs PRJNA556311 vs PRJEB73312 vs PRJNA1049117
 
 

ANCOM-BC2 Differential Abundance Analysis

 

Starting with version V1.2, we include the results of ANCOM-BC (Analysis of Compositions of Microbiomes with Bias Correction) (Lin and Peddada 2020) [11]. ANCOM-BC is an updated version of "ANCOM" that:
(a) provides statistically valid test with appropriate p-values,
(b) provides confidence intervals for differential abundance of each taxon,
(c) controls the False Discovery Rate (FDR),
(d) maintains adequate power, and
(e) is computationally simple to implement.

The bias correction (BC) addresses a challenging problem of the bias introduced by differences in the sampling fractions across samples. This bias has been a major hurdle in performing DA analysis of microbiome data. ANCOM-BC estimates the unknown sampling fractions and corrects the bias induced by their differences among samples. The absolute abundance data are modeled using a linear regression framework.

Starting with version V1.43, ANCOM-BC2 is used instead of ANCOM-BC, So that multiple pairwise directional test can be performed (if there are more than two gorups in a comparison). When performing pairwise directional test, the mixed directional false discover rate (mdFDR) is taken into account. The mdFDR is the combination of false discovery rate due to multiple testing, multiple pairwise comparisons, and directional tests within each pairwise comparison. The mdFDR is adopted from (Guo, Sarkar, and Peddada 2010 [12]; Grandhi, Guo, and Peddada 2016 [13]). For more detail explanation and additional features of ANCOM-BC2 please see author's documentation.

References:

  1. Lin H, Peddada SD. Analysis of compositions of microbiomes with bias correction. Nat Commun. 2020 Jul 14;11(1):3514. doi: 10.1038/s41467-020-17041-7. PMID: 32665548; PMCID: PMC7360769.
  2. Guo W, Sarkar SK, Peddada SD. Controlling false discoveries in multidimensional directional decisions, with applications to gene expression data on ordered categories. Biometrics. 2010 Jun;66(2):485-92. doi: 10.1111/j.1541-0420.2009.01292.x. Epub 2009 Jul 23. PMID: 19645703; PMCID: PMC2895927.
  3. Grandhi A, Guo W, Peddada SD. A multiple testing procedure for multi-dimensional pairwise comparisons with application to gene expression studies. BMC Bioinformatics. 2016 Feb 25;17:104. doi: 10.1186/s12859-016-0937-5. PMID: 26917217; PMCID: PMC4768411.
 
 
ANCOM-BC Results for Individual Comparisons
 
Comparison No.Comparison Name
Comparison 1.Control_Mucosa vs OLP_Mucosa
Comparison 2.Control_Saliva vs OLP_Saliva
Comparison 3.Control_Mucosa vs OLP_Mucosa vs Unknown_Mucosa vs Unaffected_Mucosa
Comparison 4.Control_Saliva vs OLP_Saliva vs Unknown_Saliva
Comparison 5.Control vs OLP vs Unaffected vs Unknown
Comparison 6.Control vs OLP
Comparison 7.China vs South Korea vs Sweden
Comparison 8.PRJNA266382 vs PRJNA295501 vs PRJNA1043432 vs PRJNA756771 vs PRJNA598825 vs PRJNA556311 vs PRJEB73312 vs PRJNA1049117
 
 
 
 
 

LEfSe - Linear Discriminant Analysis Effect Size

LEfSe (Linear Discriminant Analysis Effect Size) is an alternative method to find "organisms, genes, or pathways that consistently explain the differences between two or more microbial communities" (Segata et al., 2011) [14]. Specifically, LEfSe uses rank-based Kruskal-Wallis (KW) sum-rank test to detect features with significant differential (relative) abundance with respect to the class of interest. Since it is rank-based, instead of proportional based, the differential species identified among the comparison groups is less biased (than percent abundance based).

Reference:

  1. Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, Huttenhower C. Metagenomic biomarker discovery and explanation. Genome Biol. 2011 Jun 24;12(6):R60. doi: 10.1186/gb-2011-12-6-r60. PMID: 21702898; PMCID: PMC3218848.
 
Control_Mucosa vs OLP_Mucosa
 
 
 
 
 
 
 
LEfSe Results for All Comparisons
 
Comparison No.Comparison Name
Comparison 1.Control_Mucosa vs OLP_Mucosa
Comparison 2.Control_Saliva vs OLP_Saliva
Comparison 3.Control_Mucosa vs OLP_Mucosa vs Unknown_Mucosa vs Unaffected_Mucosa
Comparison 4.Control_Saliva vs OLP_Saliva vs Unknown_Saliva
Comparison 5.Control vs OLP vs Unaffected vs Unknown
Comparison 6.Control vs OLP
Comparison 7.China vs South Korea vs Sweden
Comparison 8.PRJNA266382 vs PRJNA295501 vs PRJNA1043432 vs PRJNA756771 vs PRJNA598825 vs PRJNA556311 vs PRJEB73312 vs PRJNA1049117
 
 

XI. Analysis - Heatmap Profile

 

Species vs Sample Abundance Heatmap for All Samples

 
 
 

Heatmaps for Individual Comparisons

 
A) Two-way clustering - clustered on both columns (Samples) and rows (organism)
Comparison No.Comparison NameFamily LevelGenus LevelSpecies Level
Comparison 1Control_Mucosa vs OLP_MucosaPDFSVGPDFSVGPDFSVG
Comparison 2Control_Saliva vs OLP_SalivaPDFSVGPDFSVGPDFSVG
Comparison 3Control_Mucosa vs OLP_Mucosa vs Unknown_Mucosa vs Unaffected_MucosaPDFSVGPDFSVGPDFSVG
Comparison 4Control_Saliva vs OLP_Saliva vs Unknown_SalivaPDFSVGPDFSVGPDFSVG
Comparison 5Control vs OLP vs Unaffected vs UnknownPDFSVGPDFSVGPDFSVG
Comparison 6Control vs OLPPDFSVGPDFSVGPDFSVG
Comparison 7China vs South Korea vs SwedenPDFSVGPDFSVGPDFSVG
Comparison 8PRJNA266382 vs PRJNA295501 vs PRJNA1043432 vs PRJNA756771 vs PRJNA598825 vs PRJNA556311 vs PRJEB73312 vs PRJNA1049117PDFSVGPDFSVGPDFSVG
 
 
B) One-way clustering - clustered on rows (organism) only
Comparison No.Comparison NameFamily LevelGenus LevelSpecies Level
Comparison 1Control_Mucosa vs OLP_MucosaPDFSVGPDFSVGPDFSVG
Comparison 2Control_Saliva vs OLP_SalivaPDFSVGPDFSVGPDFSVG
Comparison 3Control_Mucosa vs OLP_Mucosa vs Unknown_Mucosa vs Unaffected_MucosaPDFSVGPDFSVGPDFSVG
Comparison 4Control_Saliva vs OLP_Saliva vs Unknown_SalivaPDFSVGPDFSVGPDFSVG
Comparison 5Control vs OLP vs Unaffected vs UnknownPDFSVGPDFSVGPDFSVG
Comparison 6Control vs OLPPDFSVGPDFSVGPDFSVG
Comparison 7China vs South Korea vs SwedenPDFSVGPDFSVGPDFSVG
Comparison 8PRJNA266382 vs PRJNA295501 vs PRJNA1043432 vs PRJNA756771 vs PRJNA598825 vs PRJNA556311 vs PRJEB73312 vs PRJNA1049117PDFSVGPDFSVGPDFSVG
 
 
C) No clustering
Comparison No.Comparison NameFamily LevelGenus LevelSpecies Level
Comparison 1Control_Mucosa vs OLP_MucosaPDFSVGPDFSVGPDFSVG
Comparison 2Control_Saliva vs OLP_SalivaPDFSVGPDFSVGPDFSVG
Comparison 3Control_Mucosa vs OLP_Mucosa vs Unknown_Mucosa vs Unaffected_MucosaPDFSVGPDFSVGPDFSVG
Comparison 4Control_Saliva vs OLP_Saliva vs Unknown_SalivaPDFSVGPDFSVGPDFSVG
Comparison 5Control vs OLP vs Unaffected vs UnknownPDFSVGPDFSVGPDFSVG
Comparison 6Control vs OLPPDFSVGPDFSVGPDFSVG
Comparison 7China vs South Korea vs SwedenPDFSVGPDFSVGPDFSVG
Comparison 8PRJNA266382 vs PRJNA295501 vs PRJNA1043432 vs PRJNA756771 vs PRJNA598825 vs PRJNA556311 vs PRJEB73312 vs PRJNA1049117PDFSVGPDFSVGPDFSVG
 
 

XII. Analysis - Network Association

To analyze the co-occurrence or co-exclusion between microbial species among different samples, network correlation analysis tools are usually used for this purpose. However, microbiome count data are compositional. If count data are normalized to the total number of counts in the sample, the data become not independent and traditional statistical metrics (e.g., correlation) for the detection of specie-species relationships can lead to spurious results. In addition, sequencing-based studies typically measure hundreds of OTUs (species) on few samples; thus, inference of OTU-OTU association networks is severely under-powered. We provide the network association result with SparCC (Sparse Correlations for Compositional data)(Friedman & Alm 2012), which is a method for inferring correlations from compositional data. SparCC estimates the linear Pearson correlations between the log-transformed components.


References:

Friedman J, Alm EJ. Inferring correlation networks from genomic survey data. PLoS Comput Biol. 2012;8(9):e1002687. doi: 10.1371/journal.pcbi.1002687. Epub 2012 Sep 20. PMID: 23028285; PMCID: PMC3447976.

 

Association Network Inference by SparCC

 

 

 
 

XIII. Disclaimer

The results of this analysis are for research purpose only. They are not intended to diagnose, treat, cure, or prevent any disease. Forsyth and FOMC are not responsible for use of information provided in this report outside the research area.

 

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